mRNA_H-canaliculatus_F_contig15204.3881.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15204.3881.1
Unique NamemRNA_H-canaliculatus_F_contig15204.3881.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15204.3881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15204contigH-canaliculatus_F_contig15204:84..806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size723
Cds size720
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.4503317-CDS-H-canaliculatus_F_contig15204:83..8031622929260.4503317-CDS-H-canaliculatus_F_contig15204:83..803Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15204 84..803 -
1696845740.3426664-CDS-H-canaliculatus_F_contig15204:83..8031696845740.3426664-CDS-H-canaliculatus_F_contig15204:83..803Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15204 84..803 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.46909-UTR-H-canaliculatus_F_contig15204:803..8061622929260.46909-UTR-H-canaliculatus_F_contig15204:803..806Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15204 804..806 -
1696845740.355474-UTR-H-canaliculatus_F_contig15204:803..8061696845740.355474-UTR-H-canaliculatus_F_contig15204:803..806Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15204 804..806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15204.3881.1prot_H-canaliculatus_F_contig15204.3881.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15204 84..803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15204.3881.1

>prot_H-canaliculatus_F_contig15204.3881.1 ID=prot_H-canaliculatus_F_contig15204.3881.1|Name=mRNA_H-canaliculatus_F_contig15204.3881.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=240bp
MGEVRDTVQGDGDVGYVSLDPGGGVFSIEPGPINIRVNVNTVPDATGLKL
TYQAQAGFETTAFFGFLSGPKNIKSLDPEVEYTVRLYVDSGSGYEMAEEQ
VVSTLANSASNYKVDDFVEDGKIELGGLDAAAKARMSAVMNELFSTGDKV
NIEVGGKRSRNAKFVNRGSTSRIDEAEALFLPFDAGSGGSQTINIQLSDN
STTAVEYDEVDNTIAVESVVYNTGDSFLIDGHKCLVVEY*
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mRNA from alignment at H-canaliculatus_F_contig15204:84..806-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15204.3881.1 ID=mRNA_H-canaliculatus_F_contig15204.3881.1|Name=mRNA_H-canaliculatus_F_contig15204.3881.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=723bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15204:84..806- (Hapterophycus canaliculatus Oshoro5f female)
ACAATGGGCGAAGTTCGTGACACAGTTCAAGGAGACGGAGACGTTGGATA
TGTTTCTTTAGACCCGGGTGGTGGCGTGTTTTCCATCGAGCCCGGCCCAA
TCAACATCCGGGTCAATGTCAACACCGTCCCCGACGCCACCGGCCTCAAG
TTGACCTACCAGGCACAGGCGGGGTTCGAGACGACGGCTTTCTTCGGGTT
TCTCTCCGGACCCAAGAATATCAAGTCGCTCGACCCCGAAGTGGAGTACA
CTGTGAGATTGTACGTGGACTCGGGTTCCGGGTATGAGATGGCAGAAGAA
CAAGTTGTTTCAACCCTCGCAAACTCCGCATCAAACTACAAAGTGGATGA
CTTTGTGGAGGACGGCAAGATAGAGCTTGGTGGTCTCGATGCAGCGGCCA
AGGCGCGTATGTCGGCCGTCATGAACGAATTATTTAGTACCGGCGACAAG
GTCAACATCGAGGTCGGCGGCAAGAGATCCAGAAACGCCAAGTTCGTCAA
CCGGGGATCTACCTCACGCATCGACGAGGCAGAAGCCCTTTTCTTGCCCT
TCGACGCCGGATCGGGAGGTTCTCAGACGATCAACATCCAGCTTTCAGAC
AATTCAACGACGGCCGTGGAATACGACGAAGTGGATAACACTATTGCGGT
GGAGTCTGTCGTGTACAACACGGGAGATTCTTTTCTTATCGACGGACACA
AGTGTCTCGTCGTTGAGTATTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15204:84..806-

>mRNA_H-canaliculatus_F_contig15204.3881.1 ID=mRNA_H-canaliculatus_F_contig15204.3881.1|Name=mRNA_H-canaliculatus_F_contig15204.3881.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1440bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15204:84..806- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGAAGTTCGTGACACAGTTCAAGGAGACGGAGACGTTGGATATGT
TTCTTTAGACCCGGGTGGTGGCGTGTTTTCCATCGAGCCCGGCCCAATCA
ACATCCGGGTCAATGTCAACACCGTCCCCGACGCCACCGGCCTCAAGTTG
ACCTACCAGGCACAGGCGGGGTTCGAGACGACGGCTTTCTTCGGGTTTCT
CTCCGGACCCAAGAATATCAAGTCGCTCGACCCCGAAGTGGAGTACACTG
TGAGATTGTACGTGGACTCGGGTTCCGGGTATGAGATGGCAGAAGAACAA
GTTGTTTCAACCCTCGCAAACTCCGCATCAAACTACAAAGTGGATGACTT
TGTGGAGGACGGCAAGATAGAGCTTGGTGGTCTCGATGCAGCGGCCAAGG
CGCGTATGTCGGCCGTCATGAACGAATTATTTAGTACCGGCGACAAGGTC
AACATCGAGGTCGGCGGCAAGAGATCCAGAAACGCCAAGTTCGTCAACCG
GGGATCTACCTCACGCATCGACGAGGCAGAAGCCCTTTTCTTGCCCTTCG
ACGCCGGATCGGGAGGTTCTCAGACGATCAACATCCAGCTTTCAGACAAT
TCAACGACGGCCGTGGAATACGACGAAGTGGATAACACTATTGCGGTGGA
GTCTGTCGTGTACAACACGGGAGATTCTTTTCTTATCGACGGACACAAGT
GTCTCGTCGTTGAGTATTGAATGGGCGAAGTTCGTGACACAGTTCAAGGA
GACGGAGACGTTGGATATGTTTCTTTAGACCCGGGTGGTGGCGTGTTTTC
CATCGAGCCCGGCCCAATCAACATCCGGGTCAATGTCAACACCGTCCCCG
ACGCCACCGGCCTCAAGTTGACCTACCAGGCACAGGCGGGGTTCGAGACG
ACGGCTTTCTTCGGGTTTCTCTCCGGACCCAAGAATATCAAGTCGCTCGA
CCCCGAAGTGGAGTACACTGTGAGATTGTACGTGGACTCGGGTTCCGGGT
ATGAGATGGCAGAAGAACAAGTTGTTTCAACCCTCGCAAACTCCGCATCA
AACTACAAAGTGGATGACTTTGTGGAGGACGGCAAGATAGAGCTTGGTGG
TCTCGATGCAGCGGCCAAGGCGCGTATGTCGGCCGTCATGAACGAATTAT
TTAGTACCGGCGACAAGGTCAACATCGAGGTCGGCGGCAAGAGATCCAGA
AACGCCAAGTTCGTCAACCGGGGATCTACCTCACGCATCGACGAGGCAGA
AGCCCTTTTCTTGCCCTTCGACGCCGGATCGGGAGGTTCTCAGACGATCA
ACATCCAGCTTTCAGACAATTCAACGACGGCCGTGGAATACGACGAAGTG
GATAACACTATTGCGGTGGAGTCTGTCGTGTACAACACGGGAGATTCTTT
TCTTATCGACGGACACAAGTGTCTCGTCGTTGAGTATTGA
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