mRNA_H-canaliculatus_F_contig152.3877.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig152.3877.1
Unique NamemRNA_H-canaliculatus_F_contig152.3877.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig152.3877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig152contigH-canaliculatus_F_contig152:23050..23617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size568
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.0428076-CDS-H-canaliculatus_F_contig152:23049..233521622929260.0428076-CDS-H-canaliculatus_F_contig152:23049..23352Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig152 23050..23352 +
1696845740.1536655-CDS-H-canaliculatus_F_contig152:23049..233521696845740.1536655-CDS-H-canaliculatus_F_contig152:23049..23352Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig152 23050..23352 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.0594797-UTR-H-canaliculatus_F_contig152:23352..236171622929260.0594797-UTR-H-canaliculatus_F_contig152:23352..23617Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig152 23353..23617 +
1696845740.1642466-UTR-H-canaliculatus_F_contig152:23352..236171696845740.1642466-UTR-H-canaliculatus_F_contig152:23352..23617Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig152 23353..23617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig152.3877.1prot_H-canaliculatus_F_contig152.3877.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig152 23050..23352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig152.3877.1

>prot_H-canaliculatus_F_contig152.3877.1 ID=prot_H-canaliculatus_F_contig152.3877.1|Name=mRNA_H-canaliculatus_F_contig152.3877.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
MQVRRQRGPRRSKRRVRPCLGRVAFCSCGNANRGFIFLRSVVVGTSIYNN
NIQPACRSNPFLLPTAVCAFLLHATASSCSLSCCGCREEAIWPNRPSFLT
*
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mRNA from alignment at H-canaliculatus_F_contig152:23050..23617+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig152.3877.1 ID=mRNA_H-canaliculatus_F_contig152.3877.1|Name=mRNA_H-canaliculatus_F_contig152.3877.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=568bp|location=Sequence derived from alignment at H-canaliculatus_F_contig152:23050..23617+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGGTCAGGCGGCAGAGAGGACCACGGCGTTCGAAGAGACGTGTTCG
ACCCTGCCTAGGACGAGTCGCCTTTTGCTCCTGTGGTAATGCAAACAGAG
GCTTCATTTTTTTGCGTTCTGTTGTTGTGGGTACATCTATCTACAACAAC
AACATACAACCTGCCTGTAGAAGCAACCCGTTTTTGTTGCCGACTGCTGT
TTGCGCGTTCCTGCTGCATGCAACAGCTTCTTCTTGCTCACTATCTTGCT
GTGGCTGTCGCGAGGAGGCTATTTGGCCCAATCGTCCATCTTTTCTAACT
TGAAGCAAGCACGGAAGCATCGAGAGTAGGAATCAAGGGATGTTGAACGG
CGACGTATGCCCGAGGTTTGTCGCACCGCTGTAGCCCGCGATATCGCATG
CGACAGATCCTCTTCGAAAGAACCAGCCTCAAGATAAATGTTGAGATCGA
CCCACTGAAGCTCGAAGTTGCATCCGTGTCTCGAAATCGTCCCAAAGCGG
CCATCGGGTGCCAGGCAGCATCGCGATTGCTTTTTCTTGCATCTCGCCCA
CATTTATATATGGCCGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig152:23050..23617+

>mRNA_H-canaliculatus_F_contig152.3877.1 ID=mRNA_H-canaliculatus_F_contig152.3877.1|Name=mRNA_H-canaliculatus_F_contig152.3877.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig152:23050..23617+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGGTCAGGCGGCAGAGAGGACCACGGCGTTCGAAGAGACGTGTTCG
ACCCTGCCTAGGACGAGTCGCCTTTTGCTCCTGTGGTAATGCAAACAGAG
GCTTCATTTTTTTGCGTTCTGTTGTTGTGGGTACATCTATCTACAACAAC
AACATACAACCTGCCTGTAGAAGCAACCCGTTTTTGTTGCCGACTGCTGT
TTGCGCGTTCCTGCTGCATGCAACAGCTTCTTCTTGCTCACTATCTTGCT
GTGGCTGTCGCGAGGAGGCTATTTGGCCCAATCGTCCATCTTTTCTAACT
TGAATGCAGGTCAGGCGGCAGAGAGGACCACGGCGTTCGAAGAGACGTGT
TCGACCCTGCCTAGGACGAGTCGCCTTTTGCTCCTGTGGTAATGCAAACA
GAGGCTTCATTTTTTTGCGTTCTGTTGTTGTGGGTACATCTATCTACAAC
AACAACATACAACCTGCCTGTAGAAGCAACCCGTTTTTGTTGCCGACTGC
TGTTTGCGCGTTCCTGCTGCATGCAACAGCTTCTTCTTGCTCACTATCTT
GCTGTGGCTGTCGCGAGGAGGCTATTTGGCCCAATCGTCCATCTTTTCTA
ACTTGA
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