mRNA_H-canaliculatus_F_contig15199.3876.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15199.3876.1
Unique NamemRNA_H-canaliculatus_F_contig15199.3876.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15199.3876.1 vs. uniprot
Match: A0A6H5JES6_9PHAE (PBPe domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES6_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 7.360e-30
Identity = 55/68 (80.88%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 KKLSEILGFTYSLRAPPTGSPTPATIEMVRNGSADMTGSWITITAERSEYVSFTYPYYDLGIAFVYKP 204
            +KL++++GFTYSLRAPP G+ TP TIEMVRNGSADMTGSWITIT+ER+EYVSFTYPY+DLGIAFVY P
Sbjct:  180 EKLADVVGFTYSLRAPPEGTTTPDTIEMVRNGSADMTGSWITITSERAEYVSFTYPYFDLGIAFVYLP 247
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BLAST of mRNA_H-canaliculatus_F_contig15199.3876.1 vs. uniprot
Match: D7G1B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B0_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.010e-29
Identity = 55/68 (80.88%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 KKLSEILGFTYSLRAPPTGSPTPATIEMVRNGSADMTGSWITITAERSEYVSFTYPYYDLGIAFVYKP 204
            K+L++++GFTYSLRAPP G+ TP TIEMVRNGSADMTGSWITIT+ER+EYVSFTYPY+DLGIAFVY P
Sbjct:  398 KQLADVVGFTYSLRAPPEGTTTPETIEMVRNGSADMTGSWITITSERAEYVSFTYPYFDLGIAFVYLP 465
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15199.3876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JES6_9PHAE7.360e-3080.88PBPe domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G1B0_ECTSI1.010e-2980.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15199contigH-canaliculatus_F_contig15199:399..605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue3.9e-25
Seed eggNOG ortholog2880.D7G1B0
KEGG koko:K05313
KEGG TC1.A.10.1.14,1.A.10.1.15,1.A.10.1.16,1.A.10.1.17
EggNOG free text desc.ionotropic glutamate receptor activity
EggNOG OGsKOG1052@1,KOG1052@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929259.8416672-CDS-H-canaliculatus_F_contig15199:398..6051622929259.8416672-CDS-H-canaliculatus_F_contig15199:398..605Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15199 399..605 +
1696845740.1421177-CDS-H-canaliculatus_F_contig15199:398..6051696845740.1421177-CDS-H-canaliculatus_F_contig15199:398..605Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15199 399..605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15199.3876.1prot_H-canaliculatus_F_contig15199.3876.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15199 399..605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15199.3876.1

>prot_H-canaliculatus_F_contig15199.3876.1 ID=prot_H-canaliculatus_F_contig15199.3876.1|Name=mRNA_H-canaliculatus_F_contig15199.3876.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=69bp
KKLSEILGFTYSLRAPPTGSPTPATIEMVRNGSADMTGSWITITAERSEY
VSFTYPYYDLGIAFVYKPE
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mRNA from alignment at H-canaliculatus_F_contig15199:399..605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15199.3876.1 ID=mRNA_H-canaliculatus_F_contig15199.3876.1|Name=mRNA_H-canaliculatus_F_contig15199.3876.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=207bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15199:399..605+ (Hapterophycus canaliculatus Oshoro5f female)
AAGAAATTGTCGGAGATCCTTGGATTTACGTACTCGCTGAGAGCGCCTCC
AACGGGGTCTCCGACCCCGGCGACGATCGAGATGGTGAGGAACGGGTCCG
CCGACATGACGGGCAGCTGGATCACCATCACCGCCGAGAGGTCGGAGTAT
GTCTCGTTCACCTACCCTTACTACGACCTGGGCATCGCCTTCGTCTACAA
GCCCGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15199:399..605+

>mRNA_H-canaliculatus_F_contig15199.3876.1 ID=mRNA_H-canaliculatus_F_contig15199.3876.1|Name=mRNA_H-canaliculatus_F_contig15199.3876.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=414bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15199:399..605+ (Hapterophycus canaliculatus Oshoro5f female)
AAGAAATTGTCGGAGATCCTTGGATTTACGTACTCGCTGAGAGCGCCTCC
AACGGGGTCTCCGACCCCGGCGACGATCGAGATGGTGAGGAACGGGTCCG
CCGACATGACGGGCAGCTGGATCACCATCACCGCCGAGAGGTCGGAGTAT
GTCTCGTTCACCTACCCTTACTACGACCTGGGCATCGCCTTCGTCTACAA
GCCCGAGAAGAAATTGTCGGAGATCCTTGGATTTACGTACTCGCTGAGAG
CGCCTCCAACGGGGTCTCCGACCCCGGCGACGATCGAGATGGTGAGGAAC
GGGTCCGCCGACATGACGGGCAGCTGGATCACCATCACCGCCGAGAGGTC
GGAGTATGTCTCGTTCACCTACCCTTACTACGACCTGGGCATCGCCTTCG
TCTACAAGCCCGAG
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