mRNA_H-canaliculatus_F_contig15190.3875.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig15190.3875.1 vs. uniprot
Match: D8LSW8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSW8_ECTSI) HSP 1 Score: 322 bits (826), Expect = 6.600e-102 Identity = 165/193 (85.49%), Postives = 173/193 (89.64%), Query Frame = 1
Query: 1 ATVTVNNGQPSVGGGSDIFDEGDESPSDGRVSAGGG--AFMCTPQSFPPTPVSRAHVMARTCQFSDDILFLARDQLRLGENLKPGVDETTRATADFLRRQQRLAVLDGNNACEGIVLTCGHHRATKVGPSLYSSARAMVPVLRNRHVYFQVSCMREGPLAPSVGVGLSTPEMPLSTLVGAFSNSVGLCSTGQV 573
ATVT + GQ S G GSD E + DGRVS GG AFMCTPQSFPPTPVSRAHVMART QFSDD+LFLARD LRLGENLKPGVDETTRATADFLRRQQRLAVLDG++ACEGIVLTCGHHRATKVGPSLYSSARAMVPVLRNRHVYFQVSC+REGPLAPS+GVGLSTPEMPLSTLVGAFSNSVG CSTGQ+
Sbjct: 495 ATVTKD-GQHSAGAGSDAIGEDGDDDDDGRVSVEGGSSAFMCTPQSFPPTPVSRAHVMARTSQFSDDVLFLARDHLRLGENLKPGVDETTRATADFLRRQQRLAVLDGHDACEGIVLTCGHHRATKVGPSLYSSARAMVPVLRNRHVYFQVSCVREGPLAPSIGVGLSTPEMPLSTLVGAFSNSVGFCSTGQI 686
BLAST of mRNA_H-canaliculatus_F_contig15190.3875.1 vs. uniprot
Match: A0A836CEG7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG7_9STRA) HSP 1 Score: 199 bits (506), Expect = 7.130e-60 Identity = 105/166 (63.25%), Postives = 129/166 (77.71%), Query Frame = 1
Query: 85 GRVSAGGGA-FMCTPQSFPPTPVSRAHVMARTCQFSDDILFLARDQLRLGENLKPG-VDETTRATADFLRRQQRLAVLDGNNACEGIVLTCGHHRATKVGPS-LYSSARAMVPVLRNRHVYFQVSCMREGPLAPSVGVGLSTPEMPLSTLVGAFSNSVGLCSTGQV 573
G +S GG A +MCTPQSFPPTPVSRA VM+R+ QFSDD+LFLARD LRL E + DET+R TA+FLR Q RLAVL+G+ A +GI LTCGHH A K G + LYSS RAMVPVLRNR+V+ Q S + + PS+ +GLSTPEMPL+TLVG +S+S+GL S+GQ+
Sbjct: 34 GALSTGGMALYMCTPQSFPPTPVSRACVMSRSTQFSDDVLFLARDHLRLDEQCRSRHSDETSRLTAEFLRSQARLAVLNGHAAADGISLTCGHHCAAKTGTAQLYSSVRAMVPVLRNRYVFCQFSVAAQEAIVPSLSIGLSTPEMPLNTLVGTWSHSIGLSSSGQI 199
BLAST of mRNA_H-canaliculatus_F_contig15190.3875.1 vs. uniprot
Match: A0A7S0XKD6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XKD6_9STRA) HSP 1 Score: 171 bits (434), Expect = 2.620e-46 Identity = 90/161 (55.90%), Postives = 116/161 (72.05%), Query Frame = 1
Query: 106 GAFMCTPQSFPPTPVSRAHVMARTCQFSDDILFLARDQLRLGENLKPGVDETTRATADFLRRQQRLAVLDGNNACEGIVLTCGHHRATKVGPSLYSSARAMVPVLRNRHVYFQVSCM-REG----PLAPSVGVGLSTPEMPLSTLVGAFSNSVGLCSTGQV 573
G FMCTPQSFPPTP SRAHV+ R +F+DD++FLARDQLR+ + L+ +E TR A L +RLAV D ++AC GI L+CG H ATKVG LY S+R+MVP+LRN VYF+++ + R G P ++ GLST EMP +TLVGA+ SVGLC+TGQ+
Sbjct: 444 GPFMCTPQSFPPTPASRAHVLKRGSRFADDVVFLARDQLRVHDALESS-NERTREMAQALTHGKRLAVFDADDACAGIDLSCGQHVATKVGNLLYCSSRSMVPILRNCFVYFEMTVLGRSGGLIQPSMTTLSFGLSTKEMPSTTLVGAWKGSVGLCTTGQI 603
BLAST of mRNA_H-canaliculatus_F_contig15190.3875.1 vs. uniprot
Match: A0A7S4AGD9_9STRA (Hypothetical protein n=3 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AGD9_9STRA) HSP 1 Score: 169 bits (429), Expect = 2.160e-45 Identity = 89/161 (55.28%), Postives = 115/161 (71.43%), Query Frame = 1
Query: 106 GAFMCTPQSFPPTPVSRAHVMARTCQFSDDILFLARDQLRLGENLKPGVDETTRATADFLRRQQRLAVLDGNNACEGIVLTCGHHRATKVGPSLYSSARAMVPVLRNRHVYFQVSCM-REGPLAPS----VGVGLSTPEMPLSTLVGAFSNSVGLCSTGQV 573
G FMCTPQSFPPTP SRAHV+ R +F+DD++FLARDQLR+ + L+ +E TR A+ L +RLAV D ++A GI L+CG H ATKVGP LY S R+MVP+LRN VYF+++ + R G + + + GLST EMP TLVGA+ SVGLC+TGQ+
Sbjct: 550 GPFMCTPQSFPPTPASRAHVLKRGSRFADDVVFLARDQLRVHDGLESS-NERTREMAEALTHGKRLAVFDADDASAGIDLSCGQHVATKVGPLLYCSLRSMVPILRNCFVYFEMTVLGRSGGVLQTGMATLSFGLSTKEMPTDTLVGAWKGSVGLCTTGQI 709
BLAST of mRNA_H-canaliculatus_F_contig15190.3875.1 vs. uniprot
Match: A0A1E7F3C2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3C2_9STRA) HSP 1 Score: 165 bits (418), Expect = 3.800e-44 Identity = 97/195 (49.74%), Postives = 125/195 (64.10%), Query Frame = 1
Query: 10 TVNNGQPSVGGGSDIFDEGDESPSDGRVSAGGGAFMCTPQSFPPTPVSRAHVMARTCQFSDDILFLARDQLRLGENLKPGVDETTRATADFLRRQQRLAVLDGNNACEGIVLTCGHHRATKVGPSLYSSARAMVPVLRNRHVYFQVSCMRE--GPLAPSVGV-----GLSTPEMPLSTLVGAFSNSVGLCSTGQV 573
T N+G SVG D + S S + G FMCTPQSFPPTP SRAHV+ R +F+DD++FLARDQLR+ + L+ +E TR A L +RLAV D ++A GI L+CG H ATKVG LY S+R+MVP+LRN VYF+++ + G P + GLST EMP +TLVGA+ SVGLC+TGQ+
Sbjct: 393 TTNDGSDSVG------DYNETSSSSSPLD---GPFMCTPQSFPPTPASRAHVLKRGSRFADDVVFLARDQLRVHDGLESS-NERTREMAHALTEGKRLAVFDADDASAGIDLSCGQHVATKVGNLLYCSSRSMVPILRNCFVYFEMTVLGRSGGGFIPQTSMATLSFGLSTKEMPPNTLVGAWKGSVGLCTTGQI 577
BLAST of mRNA_H-canaliculatus_F_contig15190.3875.1 vs. uniprot
Match: A0A7S1GME5_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GME5_CYCTE) HSP 1 Score: 160 bits (405), Expect = 5.720e-44 Identity = 85/160 (53.12%), Postives = 111/160 (69.38%), Query Frame = 1
Query: 112 FMCTPQSFPPTPVSRAHVMARTCQFSDDILFLARDQLRLGENLKPGVDETTRATADFLRRQQRLAVLDGNNACEGIVLTCGHHRATKVGPSLYSSARAMVPVLRNRHVYFQVSCMREGPLAPS----VGVGLSTPEMPLSTLVGAFSNSVGLCSTGQVNA 579
FMCTP+SFPPTP SR+ VMAR +F++D++FLARD+LR+ + L DE TR A L++ RLAV + GI LTCG H ATKVG LY S ++MVPVLRN VYF+++ + + + + +GLST EMPL+TLVGA+ SVGLCSTGQ+ A
Sbjct: 117 FMCTPKSFPPTPGSRSIVMARGTRFAEDVVFLARDKLRIQDGLDSS-DERTREMASALKKASRLAVFHAADVGNGIALTCGQHVATKVGNVLYCSTKSMVPVLRNCFVYFEMTVLPSNMMLQTSMATLSIGLSTSEMPLNTLVGAWKGSVGLCSTGQLLA 275
BLAST of mRNA_H-canaliculatus_F_contig15190.3875.1 vs. uniprot
Match: A0A7S3PZ78_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZ78_9STRA) HSP 1 Score: 160 bits (404), Expect = 6.290e-42 Identity = 87/170 (51.18%), Postives = 118/170 (69.41%), Query Frame = 1
Query: 85 GRVSAGGGAFMCTPQSFPPTPVSRAHVMARTCQFSDDILFLARDQLRLGENLKPGVDETTRATADFLRRQQRLAVLDGNNACEGIVLTCGHHRATKVGPSLYSSARAMVPVLRNRHVYFQVSCMREGPLA-----PSVGVGLSTPEMPLSTLVGAFSNSVGLCSTGQVNA 579
GR S+ FM TP+SFPPTP SRAHV+AR +F++D++FLARDQLR+ + + + TRA A L + +RLAV + ++ GI L+CG H A+K+G LYS+AR+M+PVLRN VYF+++ L+ S+ VGLST EMPL+ LVGA+ SVGLCSTGQ+ A
Sbjct: 616 GRESSAESPFMSTPKSFPPTPSSRAHVLARGTRFAEDVVFLARDQLRVEKGMDSD-NAQTRAMAKALSKGKRLAVFNASDVGAGIQLSCGQHCASKIGNDLYSTARSMIPVLRNSFVYFEMTVSTPPLLSMMLHHASLSVGLSTLEMPLNALVGAWKGSVGLCSTGQMLA 784
BLAST of mRNA_H-canaliculatus_F_contig15190.3875.1 vs. uniprot
Match: A0A7S2S428_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S428_9STRA) HSP 1 Score: 153 bits (386), Expect = 3.290e-41 Identity = 79/156 (50.64%), Postives = 109/156 (69.87%), Query Frame = 1
Query: 112 FMCTPQSFPPTPVSRAHVMARTCQFSDDILFLARDQLRLGENLKPGVDETTRATADFLRRQQRLAVLDGNNACEGIVLTCGHHRATKVGPSLYSSARAMVPVLRNRHVYFQVSCMREGPLA--PSVGVGLSTPEMPLSTLVGAFSNSVGLCSTGQV 573
MCTP SFPP+P RA VMAR+ F+DD+L+LARD LR+ + + D + R A +L+++Q LA+ +++ +GIVL+ G H A KVG L SS RAMVPVL NR VYFQ+S + S+G+GL+T EMPL+TLVG++ NS G+CS+GQ+
Sbjct: 14 LMCTPHSFPPSPEFRADVMARSAHFTDDVLYLARDHLRVAQQSRCE-DSSVREVAKYLQQRQALAIFSVSDSAQGIVLSRGGHCAAKVGSGLCSSTRAMVPVLHNRFVYFQMSVLEASHQTGLASLGLGLATAEMPLNTLVGSWKNSFGICSSGQL 168
BLAST of mRNA_H-canaliculatus_F_contig15190.3875.1 vs. uniprot
Match: A0A7S1ZBD0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZBD0_9STRA) HSP 1 Score: 154 bits (389), Expect = 1.030e-40 Identity = 83/164 (50.61%), Postives = 112/164 (68.29%), Query Frame = 1
Query: 112 FMCTPQSFPPTPVSRAHVMARTCQFSDDILFLARDQLRLGENLKPGVDETTRATADFLRRQQRLAVLDGNNACEGIVLTCGHHRATKVGPSLYSSARAMVPVLRNRHVYFQVSCMREGPLAPSV----------GVGLSTPEMPLSTLVGAFSNSVGLCSTGQV 573
FMCTP+SFPPTP SR+ VM R +F+++++FLARD+LR+ E L + TRA A L++ RLAV + ++A GI LTCG H ATKVG LY S R+M+P+LRN +VYF++S + S+ +GLST EMPL+TLVGA+ SVGLC+TGQ+
Sbjct: 176 FMCTPKSFPPTPSSRSVVMERGSRFAENVVFLARDRLRVEEALYSS-NAQTRAMAMALKQGSRLAVFNASDAAGGIALTCGQHCATKVGNFLYCSTRSMIPILRNCYVYFEMSVFSTPMVGNSMMLPHASVATLSIGLSTLEMPLNTLVGAWKGSVGLCTTGQI 338
BLAST of mRNA_H-canaliculatus_F_contig15190.3875.1 vs. uniprot
Match: A0A7S4QJC6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QJC6_9STRA) HSP 1 Score: 154 bits (389), Expect = 6.870e-40 Identity = 83/164 (50.61%), Postives = 112/164 (68.29%), Query Frame = 1
Query: 112 FMCTPQSFPPTPVSRAHVMARTCQFSDDILFLARDQLRLGENLKPGVDETTRATADFLRRQQRLAVLDGNNACEGIVLTCGHHRATKVGPSLYSSARAMVPVLRNRHVYFQVSCMREGPLAPSV----------GVGLSTPEMPLSTLVGAFSNSVGLCSTGQV 573
FMCTP+SFPPTP SR+ VM R +F+++++FLARD+LR+ E L + TRA A L++ RLAV + ++A GI LTCG H ATKVG LY S R+M+P+LRN +VYF++S + S+ +GLST EMPL+TLVGA+ SVGLC+TGQ+
Sbjct: 727 FMCTPKSFPPTPSSRSVVMERGSRFAENVVFLARDRLRVEEALYSS-NAQTRAMAMALKQGSRLAVFNASDAAGGIALTCGQHCATKVGNFLYCSTRSMIPILRNCYVYFEMSVFSTPMVGNSMMLPHASVATLSIGLSTLEMPLNTLVGAWKGSVGLCTTGQI 889 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15190.3875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig15190.3875.1 >prot_H-canaliculatus_F_contig15190.3875.1 ID=prot_H-canaliculatus_F_contig15190.3875.1|Name=mRNA_H-canaliculatus_F_contig15190.3875.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=194bp ATVTVNNGQPSVGGGSDIFDEGDESPSDGRVSAGGGAFMCTPQSFPPTPVback to top mRNA from alignment at H-canaliculatus_F_contig15190:534..2250- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig15190.3875.1 ID=mRNA_H-canaliculatus_F_contig15190.3875.1|Name=mRNA_H-canaliculatus_F_contig15190.3875.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1717bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15190:534..2250- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15190:534..2250- >mRNA_H-canaliculatus_F_contig15190.3875.1 ID=mRNA_H-canaliculatus_F_contig15190.3875.1|Name=mRNA_H-canaliculatus_F_contig15190.3875.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1164bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15190:534..2250- (Hapterophycus canaliculatus Oshoro5f female)back to top |