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Homology
BLAST of mRNA_H-canaliculatus_F_contig1518.3870.1 vs. uniprot
Match: A0A6H5JL38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL38_9PHAE) HSP 1 Score: 342 bits (878), Expect = 1.240e-107 Identity = 159/195 (81.54%), Postives = 177/195 (90.77%), Query Frame = 1
Query: 1 QATALGVIGDTVAQRLERRRNPGQRYEFKRTVHAGLLNMLIDGVFTPHWYNLLEYINDEMTLAMAVVKAMAASVLYSPFANGLFLAGAWVLSYGLKAGFGWREWKRQLAVCTVRDFEMWPPLHILNFWLVPKHWRPLAGHLAGVVLLAVISSTGLTDAELPLGQRAVPLLMRWARAIGERLTRKGRKASGAPPAQ 585
QATALGV+GDTVAQRLER RNPGQRYEF RTVHAG+LNM+IDG+FTPHWYNL++Y+NDEMTL +A KA+A+SV YSPFANGLFLAGA VL YG K FGW W+RQL VCT+RDFEMWPPLH+LNFWLVPKHWRPLAGHLAGVVLLAVIS TGLTDA LPLGQRAVPL+MRWARA+G RL+ KGR+ASGAPPA+
Sbjct: 237 QATALGVVGDTVAQRLERWRNPGQRYEFLRTVHAGILNMIIDGIFTPHWYNLVDYVNDEMTLGLAFAKAVASSVFYSPFANGLFLAGARVLRYGFKTRFGWAVWRRQLTVCTIRDFEMWPPLHVLNFWLVPKHWRPLAGHLAGVVLLAVISCTGLTDAGLPLGQRAVPLMMRWARAVGGRLSGKGRRASGAPPAK 431
BLAST of mRNA_H-canaliculatus_F_contig1518.3870.1 vs. uniprot
Match: D8LNF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF3_ECTSI) HSP 1 Score: 238 bits (606), Expect = 1.360e-71 Identity = 111/136 (81.62%), Postives = 122/136 (89.71%), Query Frame = 1
Query: 178 MTLAMAVVKAMAASVLYSPFANGLFLAGAWVLSYGLKAGFGWREWKRQLAVCTVRDFEMWPPLHILNFWLVPKHWRPLAGHLAGVVLLAVISSTGLTDAELPLGQRAVPLLMRWARAIGERLTRKGRKASGAPPAQ 585
MTL +A VKA+A+SV YSPFANGLFLAGA VL YG K FGW EW+RQL VCT+RDFEMWPPLH+LNFWLVPKHWRPLAGHLAGVVLLAVIS TGLTDA LPLGQRAVPL+MRWARA+G RL+ KGR+ASGAPPA+
Sbjct: 1 MTLGLAFVKAVASSVFYSPFANGLFLAGARVLRYGFKTRFGWAEWRRQLTVCTIRDFEMWPPLHVLNFWLVPKHWRPLAGHLAGVVLLAVISCTGLTDAGLPLGQRAVPLMMRWARAVGGRLSGKGRRASGAPPAK 136
BLAST of mRNA_H-canaliculatus_F_contig1518.3870.1 vs. uniprot
Match: A0A7S2UZM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZM4_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.130e-35 Identity = 74/164 (45.12%), Postives = 106/164 (64.63%), Query Frame = 1
Query: 1 QATALGVIGDTVAQRLERRRNPGQRYEFKRTVHAGLLNMLIDGVFTPHWYNLLEYINDEMTLAMAVVKAMAASVLYSPFANGLFLAGAWVLSYGLKAG--FGWREWKRQLAVCTVRDFEMWPPLHILNFWLVPKHWRPLAGHLAGVVLLAVIS-STGLTDAELP 483
QAT LGV+GD +AQ +E R + Y KRT+H G L MLIDG+ TPH+YN LE I+++ T+ + ++K + ++ P ANG+FLAG +L +GL F + WK QL V T+RD ++WP L +LNF L+PKHWRPLA LA + ++ + +TG + P
Sbjct: 159 QATVLGVLGDLLAQGIELRLFR-RSYNVKRTMHVGFLTMLIDGLATPHYYNALELISEKRTMPVVLLKTFIGTAIFGPVANGVFLAGVPLLQHGLDIVKMFNFASWKHQLLVATIRDLQIWPLLDMLNFKLLPKHWRPLASSLAALGVITFLGFATGFSQTTTP 321
BLAST of mRNA_H-canaliculatus_F_contig1518.3870.1 vs. uniprot
Match: A0A835YIQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIQ1_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.740e-25 Identity = 58/139 (41.73%), Postives = 80/139 (57.55%), Query Frame = 1
Query: 79 EFKRTVHAGLLNMLIDGVFTPHWYNLLEYINDEMTLAMAVVKAMAASVLYSPFANGLFLAGAWVLSYG---LKAGFGWREWKRQLAVCTVRDFEMWPPLHILNFWLVPKHWRPLAGHLAGVVLLAVISSTGLTDAELPL 486
+ +R V GLL M IDGV TP WY +LE + L + V K +A+S++Y PFANG+FLAG VL YG L GF W W+RQL + T+RD ++ P N LVP ++PL + + V+S + ELP+
Sbjct: 6 DVRRMVDVGLLTMAIDGVITPRWYAILERTSTSKALPVVVAKTVASSLIYGPFANGVFLAGVPVLRYGRAVLGRGFDWVAWRRQLLIATIRDLQLVTPCEFFNQLLVPFKYQPLGYQFSEIGFHIVLSLIAHNEMELPM 144
BLAST of mRNA_H-canaliculatus_F_contig1518.3870.1 vs. uniprot
Match: A0A7S2FW45_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FW45_9EUKA) HSP 1 Score: 61.6 bits (148), Expect = 1.690e-6 Identity = 49/173 (28.32%), Postives = 81/173 (46.82%), Query Frame = 1
Query: 1 QATALGVIGDTVAQRLERRRNPGQRYEFKRTVHAGLLNMLIDGVFTPHWYNLLEY-INDEMTLAMAVVKAMAASVLYSPFANGLFLAGAWVLSYGLKAGFGWREWKRQLAVCTVRDFEMWPPLHILNFWLVPKHWRPLAGHLAGVVLLAVIS------STGLTDAELPLGQRA 498
QA L +GDT+AQ +E R G Y+ KRT+ G+L +LI G+ T W LLE+ + T + KA+ + +++P AN +L LS G ++ + + + + P ++++F LVP RP + IS +G+ +A P+ Q A
Sbjct: 136 QAFILVAMGDTMAQTIEARAG-GIPYDAKRTLRMGMLGLLIGGLGTARWLQLLEHSVPGNGTPQLVAEKALLDACVWAPMANTAYLILT-PLSEGKSPASVRQQLRDKFVPVMQTELATFLPYNLVSFSLVPPLIRPFTTGFISMCFAVYISWVTHQPGSGVHEAASPIPQPA 306
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Mpv17/PMP22 |
| Ec32 ortholog | Ec-04_004070.1 |
| Exons | 4 |
| Model size | 2082 |
| Cds size | 486 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929259.2319849-UTR-H-canaliculatus_F_contig1518:22266..23748 | 1622929259.2319849-UTR-H-canaliculatus_F_contig1518:22266..23748 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1518 22267..23748 - |
| 1696845739.755421-UTR-H-canaliculatus_F_contig1518:22266..23748 | 1696845739.755421-UTR-H-canaliculatus_F_contig1518:22266..23748 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1518 22267..23748 - |
| 1622929259.2872722-UTR-H-canaliculatus_F_contig1518:25967..26081 | 1622929259.2872722-UTR-H-canaliculatus_F_contig1518:25967..26081 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1518 25968..26081 - |
| 1696845739.806478-UTR-H-canaliculatus_F_contig1518:25967..26081 | 1696845739.806478-UTR-H-canaliculatus_F_contig1518:25967..26081 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1518 25968..26081 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929259.2441232-CDS-H-canaliculatus_F_contig1518:23748..23997 | 1622929259.2441232-CDS-H-canaliculatus_F_contig1518:23748..23997 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1518 23749..23997 - |
| 1696845739.7656627-CDS-H-canaliculatus_F_contig1518:23748..23997 | 1696845739.7656627-CDS-H-canaliculatus_F_contig1518:23748..23997 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1518 23749..23997 - |
| 1622929259.2537801-CDS-H-canaliculatus_F_contig1518:25037..25100 | 1622929259.2537801-CDS-H-canaliculatus_F_contig1518:25037..25100 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1518 25038..25100 - |
| 1696845739.7745748-CDS-H-canaliculatus_F_contig1518:25037..25100 | 1696845739.7745748-CDS-H-canaliculatus_F_contig1518:25037..25100 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1518 25038..25100 - |
| 1622929259.2631512-CDS-H-canaliculatus_F_contig1518:25302..25466 | 1622929259.2631512-CDS-H-canaliculatus_F_contig1518:25302..25466 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1518 25303..25466 - |
| 1696845739.783297-CDS-H-canaliculatus_F_contig1518:25302..25466 | 1696845739.783297-CDS-H-canaliculatus_F_contig1518:25302..25466 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1518 25303..25466 - |
| 1622929259.2739263-CDS-H-canaliculatus_F_contig1518:25957..25967 | 1622929259.2739263-CDS-H-canaliculatus_F_contig1518:25957..25967 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1518 25958..25967 - |
| 1696845739.7939389-CDS-H-canaliculatus_F_contig1518:25957..25967 | 1696845739.7939389-CDS-H-canaliculatus_F_contig1518:25957..25967 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1518 25958..25967 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1518.3870.1 >prot_H-canaliculatus_F_contig1518.3870.1 ID=prot_H-canaliculatus_F_contig1518.3870.1|Name=mRNA_H-canaliculatus_F_contig1518.3870.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=162bp
MLIDGVFTPHWYNLLEYINDEMTLAMAVVKAMAASVLYSPFANGLFLAGA WVLSYGLKAGFGWREWKRQLAVCTVRDFEMWPPLHILNFWLVPKHWRPLA GHLAGVVLLAVISSTGLTDAELPLGQRAVPLLMRWARAIGERLTRKGRKA SGAPPAQRGRA* back to topmRNA from alignment at H-canaliculatus_F_contig1518:22267..26081- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1518.3870.1 ID=mRNA_H-canaliculatus_F_contig1518.3870.1|Name=mRNA_H-canaliculatus_F_contig1518.3870.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3815bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1518:22267..26081- (Hapterophycus canaliculatus Oshoro5f female) CAGGCGACTGCACTCGGCGTGATTGGGGACACGGTAGCCCAGAGGCTGGA
GAGGAGGCGCAACCCTGGTCAGCGATACGAATTCAAGCGCACGGTGCATG
CTGGCCTTCTCAACATGCTCATAGGTACCGCCGTGCCCACGCGCAGAGGT
TGAACAGGGCGCCGGAAGCCGTCAGTGGCCGTAGCATATGGACCCGGACG
CACGCATCGAATCTAATTTCCTGCTTCAGCCAAACAATGTGGAATAGTGA
GCCGGACATTTTAAAGTAGACTTTAAAAAAGATCTCCATGTTGGCTGAGG
CTTCCCTGACCGCATAAATGGCGCTGAGGCCGAAGTGGAGGTTTCGCACC
CGCTGCGTTCGTCACCACGTGAGCGGCGTGGTAGTGTCATGAAATGGCCA
GTTGAAGCAGCACCCGAGCAACCCCTCCGCTCTACCTGTCATGTCCGTAT
CGCAACATCGCAGACCATAATTCCTTGCAGTTTGGCTTCGGAGCGGCAAG
ACTTCGTCGAATATGACCCATACGTATTGTCGATCTACACATTGTACGGA
TCTAACATTCTGATGGGTTTCAATTCCTGCCGCGTTCTTCCCGTTTTTTA
TGCGACCCGCCGCAGATGGCGTTTTCACACCGCACTGGTACAACTTGTTG
GAGTACATCAATGATGAAATGACGTTGGCGATGGCGGTCGTCAAGGCCAT
GGCGGCTAGCGTTCTCTACAGCCCTTTCGCAAATGGGCTATTCCTCGCTG
GTGCCTGGGTGCTAAGCTACGGGTTGAAGGTACGAATGGGGTTTTTCGAA
AGAGGGGTAGAAAAGCCTCCGGTTGATGTTGGTGGGTGTTGTACCGCTGT
TTGTCGGCAGAGCAGTGAAATGAAGACACCTCGAGTGTGATTGTCCTCAA
CGAGCCGAACTAGGATCAATCGGTTTGCCTGTTGCGTGAACTTGAAAAAT
TTCCTGCTCCACTCCACGCTTCGACACACAGGCTGGATTTGGATGGAGGG
AGTGGAAGCGGCAGTTGGCCGTATGCACGGTCCGAGACTTCGAGGTGAGC
AGTCTATGCACTGGGTCCTCGGATGCGTCCAGATGAAGCTTGGTTTGATG
GCGATGCTTTGGCTATCATCGCGAGCGCGTTGTGCGAGTGCACCATAGCG
TGCTTTGATGTTGTTCGGGACTTGAACGCCTGCGTACGCGTCAACCATAC
CAAAACAAAGCACTACCAGCCACACTGTGTCGCTACATCCACGGAAGCTA
GACCGGGCGTCCCAACATAATCCTTGCCACACCACACTAATCAAGAATAT
CTATCTTAAACTCCCAATCGTTTGCGAGCGGGAGCAATTACGCTTGGGTT
GCTTACCGGACCAAGCGCTTTCGTTATAAAGACACTCACACCAAAATGGG
TCAGCCCGGAATGGAAACCAGCGCGTTCTCCGTCCAGATGCTGATAGGAC
GGCAATAACTATCCGTGATTTGGATACACTACGATGTGAAACATCGTCCA
GGAAAGGTATTGCCTGTCACGCGTTATGAGATCGTATTTTCGCAACGTTT
CCCCAATGATTATGTAGCTGCATGGGCATTTGCTCCCGACTGCCACGTAG
GTAGCCCGTTCCTTCCCCGCCGTGCGCGCTTGCGCCAGACTTGTATCACC
TGGATAGGAATATATATCGAAGAGGCATTCTGGAGTAATCTCGAAATTTT
CCCATAGGTAGCCTGGTAGATCGAACTCCAATCGTCCGAGTCATACCACA
GGGTCACTCCGAGCCACGCACCCACGTTTGATTTAACTTGCGCGGATCCT
GAGTGCCAACCGCATGCTTCATGTAGGCGTGCGAGCCTAAGATAGGAGGT
GGGAACAAACATGCCAAGCAAGAGTGAGAAGGTCGAGAGAATAAGGAGCT
CGGAAGACGCGACATACCACCACGTTGCTGGCGTTGTTGCTGCGGCTGTT
ATCTGGAACAACTGCGGCTGAGATCTGGATACCGATACCGCTGTCACTGG
GACATCTCCCTCGCGGATGCGTGGAATCCCAAAACCCAACTTACACATCC
GCGAACGCGCGCTGACTCGTATATCTTCGAGCAGATGTGGCCTCCGTTGC
ACATCCTCAACTTTTGGCTGGTGCCGAAGCACTGGCGCCCCCTAGCCGGC
CACCTCGCCGGAGTGGTACTTCTGGCTGTGATATCTTCCACCGGCCTTAC
CGATGCCGAGTTGCCCCTGGGACAACGCGCAGTGCCACTCCTGATGAGGT
GGGCGAGAGCGATAGGAGAGCGATTGACAAGAAAGGGGCGGAAAGCGTCG
GGCGCGCCTCCTGCACAGAGAGGCCGGGCCTGATTTAGTTGTCTTTCTCA
CGTGCGGAAAGGCTTTCTATCGATGGCACTGCTGCATCATGGGATAATGA
TGGCCATGCAGAGAGGGGGATGTGGCTCGGCATTGTGCTGTACCGCATGC
AGAGCCTGGGCTCATGCCACTAGGGCAGCAACAGGGGCCTGTACTCCCTC
CAGAGCGTCGCCAAGCATGCATGACATGATTTCATCAGTCGAGGCTGCAA
GCAGACAAGGGCAAGGGCGAAAATGGACGATTGATATCTGATGCAATACC
ATCCGGGGGTATGGTCGAACCTTGAGAACGTCGGCGTGAGGAAGGAAGCG
GTTGCTTTGTGATCCAGGCGAGAGGAATTTCAGCAGCTCTCTGTAGTGCG
GCGATCGGTCTGGAGCCGCCTGCTTTGCGCAACCTTGATGGACTAGCGAC
GAAACGTCATCGAATGGAGGGAGGCAGGCACCTGGTTCCCTCGGTGCCAT
GCTCGCTCATGCGCTCCGCCGGATCCAAAGACCGCATCGTGAAGAGATGT
TGCTATCTCCTTGATGCAAACAGTGAAAAATCACGTAGGATCGTCGTCGT
CGAGGAAGAAACCCCTCAAGATGAGGAGAGAGTCTGTTTTTCACTCACTC
GAGCGGCGTAATCTACGCTGTAGAAATTCGCTGCACATGACACACCTATG
GTCCACCCTTTGAATATGCCCGACTTCAGCAGGGAAGCAAGATGTGTTTT
GACAATTTGGGACGCAGCTAACTAAGAAGTGGTGCTGGTTTTACGTACGG
TTAGGCGGGGCAGGAAGCTCGTGGATGCTGCGCAATATAAAAAACGGGCG
AATTCCTGATGCTGCAAGTAAAAATAGATCTTGAGCTACATACCGTTTAC
TTTGGCTACGGAGGTGTTGTCGAGACAGTGAACAAAAGCTGTTTGTGCCA
GAAATATCCCGGCCCGTGAAAGGGAAGTCGCTGAATGGATGGCCGTACCA
CCCTCCTTCAAAGTGCCCGGGATTGGACAAGGGAGTTATTCGCCACTCAC
ACGGCCCGTGGTTTTTCGCATTTTTGAATCGTGTCCCAACTGCAGCATGG
CAAAAGAACGCCCTAGAAAGTTCCGTCATGCGCCTCCCGATGATGCTGTG
CTTTGCGAAACTTTCGATTGACAAGATGTTAAATCGAGCACACCGTTTCG
AATCTCAAGGATGCTGTGTCACAGGTCCTCCCACAATCGTGAACCAGCGT
ACAAGTTTGCCCCTCACGTGGCGAACATGCGCGGTGTAAGTCAGCATCTC
TGTGGGAATGCACTCAGCCATGCTGATCGGATCATGGGTAAATCACAGTA
TGCATTTTTCTTGTGGCAGGCTTTCACGCAAAATCTCTTTTTGAGAGGAG
TCTCCGCACCCTTTCCATGGATGCGATATTCTTGTTGTGACGCTCCTAGA
AGCTATCGGAAGAGCAGGATGGGTTAAGCATAAGTACGCCACCTTTTGGT
CAGGTAACAAAAACC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1518:22267..26081- >mRNA_H-canaliculatus_F_contig1518.3870.1 ID=mRNA_H-canaliculatus_F_contig1518.3870.1|Name=mRNA_H-canaliculatus_F_contig1518.3870.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=972bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1518:22267..26081- (Hapterophycus canaliculatus Oshoro5f female) ATGCTCATAGATGCTCATAGATGGCGTTTTCACACCGCACTGGTACAACT TGTTGGAGTACATCAATGATGAAATGACGTTGGCGATGGCGGTCGTCAAG GCCATGGCGGCTAGCGTTCTCTACAGCCCTTTCGCAAATGGGCTATTCCT CGCTGGTGCCTGGGTGCTAAGCTACGGGTTGAAGATGGCGTTTTCACACC GCACTGGTACAACTTGTTGGAGTACATCAATGATGAAATGACGTTGGCGA TGGCGGTCGTCAAGGCCATGGCGGCTAGCGTTCTCTACAGCCCTTTCGCA AATGGGCTATTCCTCGCTGGTGCCTGGGTGCTAAGCTACGGGTTGAAGGC TGGATTTGGATGGAGGGAGTGGAAGCGGCAGTTGGCCGTATGCACGGTCC GAGACTTCGAGGCTGGATTTGGATGGAGGGAGTGGAAGCGGCAGTTGGCC GTATGCACGGTCCGAGACTTCGAGATGTGGCCTCCGTTGCACATCCTCAA CTTTTGGCTGGTGCCGAAGCACTGGCGCCCCCTAGCCGGCCACCTCGCCG GAGTGGTACTTCTGGCTGTGATATCTTCCACCGGCCTTACCGATGCCGAG TTGCCCCTGGGACAACGCGCAGTGCCACTCCTGATGAGGTGGGCGAGAGC GATAGGAGAGCGATTGACAAGAAAGGGGCGGAAAGCGTCGGGCGCGCCTC CTGCACAGAGAGGCCGGGCCTGAATGTGGCCTCCGTTGCACATCCTCAAC TTTTGGCTGGTGCCGAAGCACTGGCGCCCCCTAGCCGGCCACCTCGCCGG AGTGGTACTTCTGGCTGTGATATCTTCCACCGGCCTTACCGATGCCGAGT TGCCCCTGGGACAACGCGCAGTGCCACTCCTGATGAGGTGGGCGAGAGCG ATAGGAGAGCGATTGACAAGAAAGGGGCGGAAAGCGTCGGGCGCGCCTCC TGCACAGAGAGGCCGGGCCTGA back to top
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