mRNA_H-canaliculatus_F_contig1518.3865.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1518.3865.1
Unique NamemRNA_H-canaliculatus_F_contig1518.3865.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1518.3865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1518contigH-canaliculatus_F_contig1518:317..691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size376
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929258.5460827-UTR-H-canaliculatus_F_contig1518:316..3191622929258.5460827-UTR-H-canaliculatus_F_contig1518:316..319Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1518 317..319 +
1696845739.462707-UTR-H-canaliculatus_F_contig1518:316..3191696845739.462707-UTR-H-canaliculatus_F_contig1518:316..319Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1518 317..319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929258.5596228-CDS-H-canaliculatus_F_contig1518:319..6911622929258.5596228-CDS-H-canaliculatus_F_contig1518:319..691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1518 320..691 +
1696845739.4740102-CDS-H-canaliculatus_F_contig1518:319..6911696845739.4740102-CDS-H-canaliculatus_F_contig1518:319..691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1518 320..691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1518.3865.1prot_H-canaliculatus_F_contig1518.3865.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1518 320..691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1518.3865.1

>prot_H-canaliculatus_F_contig1518.3865.1 ID=prot_H-canaliculatus_F_contig1518.3865.1|Name=mRNA_H-canaliculatus_F_contig1518.3865.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
MSHCVNHGLFSLLSLSHTGPAFETWVAPHQNRVLRFFPTRSERRICLFDE
AVLGGAMSQSRQTLLDWRSERPRFASSHGLLSCSSSSPSRMPNRGCAGVV
RVQHGFPHPMAFVPLFYLPGLFAA
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mRNA from alignment at H-canaliculatus_F_contig1518:317..691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1518.3865.1 ID=mRNA_H-canaliculatus_F_contig1518.3865.1|Name=mRNA_H-canaliculatus_F_contig1518.3865.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=375bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1518:317..691+ (Hapterophycus canaliculatus Oshoro5f female)
GAGATGTCGCACTGTGTGAACCATGGATTGTTTTCGCTTCTTTCCCTCTC
CCACACGGGCCCAGCGTTTGAAACCTGGGTTGCTCCCCACCAAAATAGAG
TGCTTCGATTCTTCCCAACGCGCAGCGAACGACGGATCTGTCTTTTTGAC
GAGGCGGTCCTCGGTGGTGCGATGTCCCAGAGCCGCCAAACCTTGCTCGA
CTGGCGTTCGGAACGCCCTCGTTTTGCCTCTTCGCATGGCCTGCTATCTT
GTTCATCTTCGTCACCGTCGCGAATGCCAAACAGGGGGTGTGCGGGCGTT
GTGCGGGTGCAGCATGGCTTCCCCCACCCGATGGCTTTTGTGCCCCTCTT
TTATCTCCCCGGGCTCTTTGCTGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1518:317..691+

>mRNA_H-canaliculatus_F_contig1518.3865.1 ID=mRNA_H-canaliculatus_F_contig1518.3865.1|Name=mRNA_H-canaliculatus_F_contig1518.3865.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1518:317..691+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGCACTGTGTGAACCATGGATTGTTTTCGCTTCTTTCCCTCTCCCA
CACGGGCCCAGCGTTTGAAACCTGGGTTGCTCCCCACCAAAATAGAGTGC
TTCGATTCTTCCCAACGCGCAGCGAACGACGGATCTGTCTTTTTGACGAG
GCGGTCCTCGGTGGTGCGATGTCCCAGAGCCGCCAAACCTTGCTCGACTG
GCGTTCGGAACGCCCTCGTTTTGCCTCTTCGCATGGCCTGCTATCTTGTT
CATCTTCGTCACCGTCGCGAATGCCAAACAGGGGGTGTGCGGGCGTTGTG
CGGGTGCAGCATGGCTTCCCCCACCCGATGGCTTTTGTGCCCCTCTTTTA
TCTCCCCGGGCTCTTTGCTGCCATGTCGCACTGTGTGAACCATGGATTGT
TTTCGCTTCTTTCCCTCTCCCACACGGGCCCAGCGTTTGAAACCTGGGTT
GCTCCCCACCAAAATAGAGTGCTTCGATTCTTCCCAACGCGCAGCGAACG
ACGGATCTGTCTTTTTGACGAGGCGGTCCTCGGTGGTGCGATGTCCCAGA
GCCGCCAAACCTTGCTCGACTGGCGTTCGGAACGCCCTCGTTTTGCCTCT
TCGCATGGCCTGCTATCTTGTTCATCTTCGTCACCGTCGCGAATGCCAAA
CAGGGGGTGTGCGGGCGTTGTGCGGGTGCAGCATGGCTTCCCCCACCCGA
TGGCTTTTGTGCCCCTCTTTTATCTCCCCGGGCTCTTTGCTGCC
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