mRNA_H-canaliculatus_F_contig15171.3864.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15171.3864.1
Unique NamemRNA_H-canaliculatus_F_contig15171.3864.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15171.3864.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 8.420e-42
Identity = 74/80 (92.50%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:    1 MASTKPTYSVMVFDAIKTLKERNGSSIQAIKKSITSTYPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSPEAKKPAPK 240
            MASTKPTY+ MVFDAIKTLKERNGSSIQAIKKSIT+TYPTLNFTPHQMRSALKKGVESGKFIK+K+SYKLS EAKKPAPK
Sbjct:    1 MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80
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BLAST of mRNA_H-canaliculatus_F_contig15171.3864.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.500e-38
Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:    7 STKPTYSVMVFDAIKTLKERNGSSIQAIKKSITSTYPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSPEAKKPAP 237
            + KPTY+VMVFDAIKTLKERNGSSIQAIKKSIT+TYPTLNFTPHQMR ALKKGVESGKFIK+K+SYKLSPEAKKPAP
Sbjct:   96 TAKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPAP 172
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BLAST of mRNA_H-canaliculatus_F_contig15171.3864.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 5.190e-35
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 1 
Query:    1 MAST-KPTYSVMVFDAIKTLKERNGSSIQAIKKSITSTYPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSPEAKKPA 234
            MA+T KPTYSVMVFDAIK LKER GSS+ A+KK I +TYP+LNFTPHQMRSALKKG ESGKFIKVKSSYKLSPEAKKPA
Sbjct:    1 MATTAKPTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
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BLAST of mRNA_H-canaliculatus_F_contig15171.3864.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 6.540e-35
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:   31 MVFDAIKTLKERNGSSIQAIKKSITSTYPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSPEAKKPAPK 240
            MVFDAIKTLKERNGSSIQAIKKSIT+TYPTLNFTPHQMRSALKKGVESGKF+K+K+SYKLS EAKKPAPK
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15171.3864.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 2.670e-33
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:   31 MVFDAIKTLKERNGSSIQAIKKSITSTYPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSPEAKKPAPK 240
            MVFDAIK+LKERNGSSIQAIKKSIT+TYP LNFTPHQMRSALKKGVE+GKFIKVKSSYKLS EAKKP PK
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70
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BLAST of mRNA_H-canaliculatus_F_contig15171.3864.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.890e-30
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:   31 MVFDAIKTLKERNGSSIQAIKKSITSTYPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSPEAKKPA 234
            MVFDAIK LKER GSS+ A+KK I +TYP+LNFTPHQMRSALKKG ESGKFIKVKSSYKLSPEAKKPA
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
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BLAST of mRNA_H-canaliculatus_F_contig15171.3864.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 6.310e-26
Identity = 51/62 (82.26%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:   31 MVFDAIKTLKERNGSSIQAIKKSITSTYPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSP 216
            MVFDAIKTLKERNGSSIQA+KKSIT+TYP L+FTPHQMRSALKKGVE+GKFIKV+ +  L+P
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLAP 62
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BLAST of mRNA_H-canaliculatus_F_contig15171.3864.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.620e-25
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:   16 PTYSVMVFDAIKTLKERNGSSIQAIKKSITSTYPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSPEAKKP 231
            PTYS M   AI  LKERNGSS+ AIKK I +TYPTLNF PHQ+R ALKKG E+G FIKVK+SYK+SPEAKKP
Sbjct:    2 PTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15171.3864.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.010e-22
Identity = 52/75 (69.33%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:   16 PTYSVMVFDAIKTLKERNGSSIQAIKKSITSTYPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLSPEAKKPAPK 240
            PTY  M  +A+K LKERNGSS+ AIKK IT++YP+L FT H MRSALKKGVESGKFIKVK+SYKLS   ++PA K
Sbjct:    2 PTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAK 76
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15171.3864.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.440e-21
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:   16 PTYSVMVFDAIKTLKERNGSSIQAIKKSITSTYPTLNFTPHQMRSALKKGVESGKFIKVKSSYKLS 213
            PTY  M  +A+K LKERNGSS+ AIKK IT++YP+L FT H +RSALKKGVESGKFIKVK+SYKLS
Sbjct:    2 PTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLS 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15171.3864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI8.420e-4292.50Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE2.500e-3890.91H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI5.190e-3584.81H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5KST0_9PHAE6.540e-3592.86H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI2.670e-3391.43H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHR9_9PHAE3.890e-3085.29H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE6.310e-2682.26H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI1.620e-2573.61H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI1.010e-2269.33H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE5.440e-2172.73H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15171contigH-canaliculatus_F_contig15171:536..1909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue9.9e-32
Seed eggNOG ortholog2880.D7G189
Preferred nameH1
KEGG koko:K11275
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size477
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15171.3864.1prot_H-canaliculatus_F_contig15171.3864.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15171 536..1909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929258.492823-CDS-H-canaliculatus_F_contig15171:535..5651622929258.492823-CDS-H-canaliculatus_F_contig15171:535..565Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15171 536..565 +
1696845739.4298043-CDS-H-canaliculatus_F_contig15171:535..5651696845739.4298043-CDS-H-canaliculatus_F_contig15171:535..565Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15171 536..565 +
1622929258.505615-CDS-H-canaliculatus_F_contig15171:1274..14331622929258.505615-CDS-H-canaliculatus_F_contig15171:1274..1433Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15171 1275..1433 +
1696845739.4431114-CDS-H-canaliculatus_F_contig15171:1274..14331696845739.4431114-CDS-H-canaliculatus_F_contig15171:1274..1433Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15171 1275..1433 +
1622929258.5164247-CDS-H-canaliculatus_F_contig15171:1621..19091622929258.5164247-CDS-H-canaliculatus_F_contig15171:1621..1909Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15171 1622..1909 +
1696845739.4534295-CDS-H-canaliculatus_F_contig15171:1621..19091696845739.4534295-CDS-H-canaliculatus_F_contig15171:1621..1909Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15171 1622..1909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15171.3864.1

>prot_H-canaliculatus_F_contig15171.3864.1 ID=prot_H-canaliculatus_F_contig15171.3864.1|Name=mRNA_H-canaliculatus_F_contig15171.3864.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=159bp
MASTKPTYSVMVFDAIKTLKERNGSSIQAIKKSITSTYPTLNFTPHQMRS
ALKKGVESGKFIKVKSSYKLSPEAKKPAPKPKKKVTKKVVKKVVKKKVVK
KKVVKKPAVKKTVAKKKPAAKKATTPKKATTSKKTVTKKAAPKKKPSTPK
KKAAPKKA*
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mRNA from alignment at H-canaliculatus_F_contig15171:536..1909+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15171.3864.1 ID=mRNA_H-canaliculatus_F_contig15171.3864.1|Name=mRNA_H-canaliculatus_F_contig15171.3864.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1374bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15171:536..1909+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGTCAACCAAACCCACCTACAGTGTGGTAAGTCTCGCCGAAAGTAC
TGCAGTAAACAAGGAGTAAAGCCAACTGCTATCCCAACACTTTGAGCTCA
GGAGAAAGGGGTGGCTGGTGGCTCATTTTGCAACGGACGCAAGGGATATT
TTTGGCCGCGTCCACCACATCAAGAAACATCGAACCGCTTTGAGATTCCG
CGAGATTCGTGGAGGTTGTTGTGATTCTTCGTGTCGAAGTGCGAACGTGC
CTGTGAACGGCTTACACGAGTACTCCGTATTACATCAAACGTTTGGATCT
GACGGCAGGTCCAAGAGACATCCCACACTCGCCGGTTTCCTTCAGCATTT
TTCAACACGGACTGTTCTGCGAACTGTACTGTAGCCTCGGGATGAATGAT
GGCATGGGCAGACAATCGACGTGTATTTGTAAGGTTTCAACTTGCCTGTC
GCGAAGCACGCACGAATACGTTACAGTGTACAGTACAAGGTGCAACAAGA
GGAGAGTTGTGCGGTGGTCGTCTAACAGGACAAGGAGCCGACAACGCCGG
AACCGGTCACTGCTATTTTCTTCTTGTAGTTTCTGTCAATCATCCTCTGG
AGTATTTCGGAGTTCAACACGGACGATACACTTGAGCTGTGAACTCTCGA
CGGTAACAGCCGATCCGACTCGTGACCAACGAAACACAAACCCTCCCTCT
CCCGCATATCGTGCACGCGCGACACTAACCCCCCCACAGATGGTATTTGA
TGCCATCAAGACCCTCAAGGAGAGGAACGGATCGTCCATCCAAGCGATCA
AGAAGAGCATCACTTCCACCTACCCCACCCTCAACTTCACGCCGCACCAA
ATGCGCAGCGCCCTCAAGAAGGGAGTCGAGTCCGGCAAGTTCATCAAGGT
GAGAACAGCGCGATAGCCATCGACCCCCCACCGGCCTTGGGTTAAAAACA
ACTTCGTGCATCGTAAGTTGCTCAGATCTGTGACCTTGTCACATTTTGAA
ATGATTGTGAGGCGTGCTGTAACGATTTCTCTTTTAGTTTCGTTGGCTGT
CCGCCTGCTCGACTGATCACCGGATCAAACCAACAGGTGAAGAGCTCGTA
CAAGCTTAGCCCAGAGGCGAAGAAGCCTGCCCCCAAGCCCAAGAAGAAGG
TGACTAAGAAGGTCGTGAAGAAGGTGGTCAAGAAGAAGGTCGTGAAGAAG
AAGGTGGTCAAGAAGCCTGCCGTCAAGAAGACCGTCGCCAAGAAGAAGCC
GGCCGCCAAGAAAGCCACTACCCCCAAGAAGGCCACAACCAGCAAGAAGA
CCGTCACCAAGAAAGCCGCGCCCAAGAAGAAGCCCTCCACTCCCAAGAAG
AAGGCCGCTCCCAAGAAGGCCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15171:536..1909+

>mRNA_H-canaliculatus_F_contig15171.3864.1 ID=mRNA_H-canaliculatus_F_contig15171.3864.1|Name=mRNA_H-canaliculatus_F_contig15171.3864.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=954bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15171:536..1909+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGTCAACCAAACCCACCTACAGTGTGATGGCGTCAACCAAACCCAC
CTACAGTGTGATGGTATTTGATGCCATCAAGACCCTCAAGGAGAGGAACG
GATCGTCCATCCAAGCGATCAAGAAGAGCATCACTTCCACCTACCCCACC
CTCAACTTCACGCCGCACCAAATGCGCAGCGCCCTCAAGAAGGGAGTCGA
GTCCGGCAAGTTCATCAAGATGGTATTTGATGCCATCAAGACCCTCAAGG
AGAGGAACGGATCGTCCATCCAAGCGATCAAGAAGAGCATCACTTCCACC
TACCCCACCCTCAACTTCACGCCGCACCAAATGCGCAGCGCCCTCAAGAA
GGGAGTCGAGTCCGGCAAGTTCATCAAGGTGAAGAGCTCGTACAAGCTTA
GCCCAGAGGCGAAGAAGCCTGCCCCCAAGCCCAAGAAGAAGGTGACTAAG
AAGGTCGTGAAGAAGGTGGTCAAGAAGAAGGTCGTGAAGAAGAAGGTGGT
CAAGAAGCCTGCCGTCAAGAAGACCGTCGCCAAGAAGAAGCCGGCCGCCA
AGAAAGCCACTACCCCCAAGAAGGCCACAACCAGCAAGAAGACCGTCACC
AAGAAAGCCGCGCCCAAGAAGAAGCCCTCCACTCCCAAGAAGAAGGCCGC
TCCCAAGAAGGCCTGAGTGAAGAGCTCGTACAAGCTTAGCCCAGAGGCGA
AGAAGCCTGCCCCCAAGCCCAAGAAGAAGGTGACTAAGAAGGTCGTGAAG
AAGGTGGTCAAGAAGAAGGTCGTGAAGAAGAAGGTGGTCAAGAAGCCTGC
CGTCAAGAAGACCGTCGCCAAGAAGAAGCCGGCCGCCAAGAAAGCCACTA
CCCCCAAGAAGGCCACAACCAGCAAGAAGACCGTCACCAAGAAAGCCGCG
CCCAAGAAGAAGCCCTCCACTCCCAAGAAGAAGGCCGCTCCCAAGAAGGC
CTGA
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