mRNA_H-canaliculatus_F_contig1517.3861.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1517.3861.1
Unique NamemRNA_H-canaliculatus_F_contig1517.3861.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1517.3861.1 vs. uniprot
Match: D7FJ60_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ60_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.410e-24
Identity = 55/112 (49.11%), Postives = 69/112 (61.61%), Query Frame = 3 
Query:    3 EETIQAEEELCSVTNAAPCIFHKVAPAPTPMPEV---VPPTGPRQIPHCAGGFPGVQSEDGAICCWEGCGECEGISTMATECVGVYDCCESKILADDVPCSDVGA--GPCVL 323
            E TIQ+ E+LC  TNAAPC+F+ VAP PTP+P     +P   P  +  C G  PG++S+DG +CC E C  C   S  A +CVGV  CC+ KIL   V CSD G   GPC+L
Sbjct:  350 EHTIQSREDLCEYTNAAPCVFNVVAPPPTPVPAPTTPMPTRPPGPVSTCTGDIPGLESDDGTVCCMEHCSSCRIES--ADQCVGVPACCQEKILLTGVKCSDEGVEEGPCIL 459
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BLAST of mRNA_H-canaliculatus_F_contig1517.3861.1 vs. uniprot
Match: A0A6H5L879_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L879_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.110e-22
Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = 3 
Query:    3 EETIQAEEELCSVTNAAPCIFHKVAPAPTPMPEV---VPPTGPRQIPHCAGGFPGVQSEDGAICCWEGCGECEGISTMATECVGVYDCCESKILADDVPCSDVGA--GPCVL 323
            E TIQ+ E LC  TNAAPC+F+ VAP PTP+P     +P   P  +  C G  PG++S+DG +CC E C  C   S  A EC GV  CC+ KIL   + CSD G   GPC+L
Sbjct:  350 EHTIQSREGLCEDTNAAPCVFNVVAPPPTPVPAPTTPMPTRPPGPVSTCTGDIPGLESDDGTVCCMEHCASCRIES--ADECAGVPACCQEKILLTGLMCSDEGVEEGPCIL 459
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BLAST of mRNA_H-canaliculatus_F_contig1517.3861.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 8.470e-7
Identity = 41/110 (37.27%), Postives = 51/110 (46.36%), Query Frame = 3 
Query:    6 ETIQAEEELCSVTNAAPCIFHKVAPAPTPMPEVVPPTGPRQIPHCAGGFPGVQSEDGAICCWEGC-GECEGI---STMATECVGVYDCCESKILADDVPCSDVGAGPCVL 323
            E I    +LCSVTN APC+           P+ V  T       C  G  GVQ  DG++CC E C G C G    S + T   G  DCC + ILA  V C +    PC++
Sbjct:  219 EEIAVVNDLCSVTNEAPCVMDP--------PDFVAST-------CPNGLAGVQ--DGSVCCAEECNGVCGGEGCGSIVGTN--GAEDCCSNTILATGVDCEEGVMAPCIM 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1517.3861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJ60_ECTSI2.410e-2449.11WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L879_9PHAE1.110e-2248.21WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K7R2_9PHAE8.470e-737.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1517contigH-canaliculatus_F_contig1517:3772..4544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size328
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929257.3290226-CDS-H-canaliculatus_F_contig1517:3773..40251622929257.3290226-CDS-H-canaliculatus_F_contig1517:3773..4025Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1517 3774..4025 -
1696845739.3171797-CDS-H-canaliculatus_F_contig1517:3773..40251696845739.3171797-CDS-H-canaliculatus_F_contig1517:3773..4025Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1517 3774..4025 -
1622929257.3441255-CDS-H-canaliculatus_F_contig1517:4472..45441622929257.3441255-CDS-H-canaliculatus_F_contig1517:4472..4544Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1517 4473..4544 -
1696845739.326545-CDS-H-canaliculatus_F_contig1517:4472..45441696845739.326545-CDS-H-canaliculatus_F_contig1517:4472..4544Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1517 4473..4544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1517.3861.1prot_H-canaliculatus_F_contig1517.3861.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1517 3774..4544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1517.3861.1

>prot_H-canaliculatus_F_contig1517.3861.1 ID=prot_H-canaliculatus_F_contig1517.3861.1|Name=mRNA_H-canaliculatus_F_contig1517.3861.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
ARRPSRPRRSCARLLTRPPVSSTRSHRPLHPCRRLSPRRDPARSPTAPAA
SPAYSPKTELFAAGRDAASAKGYRPWLLSVSASTTAASRRSWPTMCRART
WALDPACC
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mRNA from alignment at H-canaliculatus_F_contig1517:3772..4544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1517.3861.1 ID=mRNA_H-canaliculatus_F_contig1517.3861.1|Name=mRNA_H-canaliculatus_F_contig1517.3861.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=773bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1517:3772..4544- (Hapterophycus canaliculatus Oshoro5f female)
GCGAGGAGACCATCCAGGCCGAGGAGGAGCTGTGCTCGGTTACTAACGCG
GCCCCCTGTATCTTCCACAAGGGTAGGTTTCGTGGGCACGATGTTTCTGT
TTTCTTGTCACTCCGTTCGATTCGCTGTCGCGACCTGAAACACAGGGTCA
GTGCTACGTCCGGGCGGCCGCTGCCCGCAGTCTAATGGTTCTACAAAAAA
TAGGTACTGCGCATCTGGAAAACAGCGCACGTGATTGTAGATCAAGCTAC
TTGTAATAATAATAGCTTTGATGGTTTTCCCGATTCGGAGGCATCCGCCT
ACAAAGCTCTTGGAGCAGGCCCCGAACTGTCGGCGGGGCGTCGTCTCCAT
CTCTACAAACCTCCACCCGCTCCCGCACTCCCACCGTGCCTCCTCACATG
GCATGTGCTATCCATGAAGCAAGCAATCTGTGGTACCCTTTTTCCGCCCC
TCCGTCATCATCTCCCTTGTTGCTCCCCGCCCCGTGTCTGACTGAATTAC
TCGATCCCTCCCTCCCCAGTCGCACCGGCCCCTACACCCATGCCGGAGGT
TGTCCCCCCGACGGGACCCCGCCAGATCCCCCACTGCGCCGGCGGCTTCC
CCGGCGTACAGTCCGAAGACGGAGCTATTTGCTGCTGGGAGGGATGCGGC
GAGTGCGAAGGGATATCGACCATGGCTACTGAGTGTGTCGGCGTCTACGA
CTGCTGCGAGTCGAAGATCCTGGCCGACGATGTGCCGTGCTCGGACGTGG
GCGCTGGACCCTGCGTGCTGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1517:3772..4544-

>mRNA_H-canaliculatus_F_contig1517.3861.1 ID=mRNA_H-canaliculatus_F_contig1517.3861.1|Name=mRNA_H-canaliculatus_F_contig1517.3861.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1517:3772..4544- (Hapterophycus canaliculatus Oshoro5f female)
GCGAGGAGACCATCCAGGCCGAGGAGGAGCTGTGCTCGGTTACTAACGCG
GCCCCCTGTATCTTCCACAAGGGCGAGGAGACCATCCAGGCCGAGGAGGA
GCTGTGCTCGGTTACTAACGCGGCCCCCTGTATCTTCCACAAGGTCGCAC
CGGCCCCTACACCCATGCCGGAGGTTGTCCCCCCGACGGGACCCCGCCAG
ATCCCCCACTGCGCCGGCGGCTTCCCCGGCGTACAGTCCGAAGACGGAGC
TATTTGCTGCTGGGAGGGATGCGGCGAGTGCGAAGGGATATCGACCATGG
CTACTGAGTGTGTCGGCGTCTACGACTGCTGCGAGTCGAAGATCCTGGCC
GACGATGTGCCGTGCTCGGACGTGGGCGCTGGACCCTGCGTGCTGTTCGC
ACCGGCCCCTACACCCATGCCGGAGGTTGTCCCCCCGACGGGACCCCGCC
AGATCCCCCACTGCGCCGGCGGCTTCCCCGGCGTACAGTCCGAAGACGGA
GCTATTTGCTGCTGGGAGGGATGCGGCGAGTGCGAAGGGATATCGACCAT
GGCTACTGAGTGTGTCGGCGTCTACGACTGCTGCGAGTCGAAGATCCTGG
CCGACGATGTGCCGTGCTCGGACGTGGGCGCTGGACCCTGCGTGCTGT
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