mRNA_H-canaliculatus_F_contig15160.3860.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15160.3860.1
Unique NamemRNA_H-canaliculatus_F_contig15160.3860.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15160.3860.1 vs. uniprot
Match: D7G0K6_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K6_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.780e-39
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:   13 TEVTARHILVKHKGSRRPVSWQDPSGASIKQRNVAQATNMLQNLRPSIKSQDDFSKAAVARSDCSSAKRGGDLGTFPRGKMQ 258
            TEVTARHILVKHKGSRRP SWQDP+GASIKQR  AQA ++LQ LR  IKSQ+DFSK A ARSDCSSAKRGGDLGTF RGKMQ
Sbjct:   15 TEVTARHILVKHKGSRRPASWQDPAGASIKQRTQAQAASILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 96
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BLAST of mRNA_H-canaliculatus_F_contig15160.3860.1 vs. uniprot
Match: A0A6H5K9M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M4_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 4.870e-35
Identity = 67/82 (81.71%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:   13 TEVTARHILVKHKGSRRPVSWQDPSGASIKQRNVAQATNMLQNLRPSIKSQDDFSKAAVARSDCSSAKRGGDLGTFPRGKMQ 258
            TEVTARHILVKHKGSRRP SWQDPSG SI+QR   QAT++LQ LR  IKSQ+DFSK A ARSDCSSAKRGGDLGTF RGKMQ
Sbjct:  393 TEVTARHILVKHKGSRRPASWQDPSGVSIRQRTQGQATSILQGLRSGIKSQEDFSKVATARSDCSSAKRGGDLGTFGRGKMQ 474
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BLAST of mRNA_H-canaliculatus_F_contig15160.3860.1 vs. uniprot
Match: A0A836CKW2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKW2_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.780e-22
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:   25 ARHILVKHKGSRRPVSWQDPSGASIKQRNVAQATNMLQNLRPSIKSQDDFSKAAVARSDCSSAKRGGDLGTFPRGKMQ 258
            ARHILVKH+GSRRP SW+DP G  I  R+  QA  ML ++R SI++ +DF++ A   SDCSSA+ GGDLG F  G+MQ
Sbjct:    3 ARHILVKHQGSRRPASWKDPEGIEISARSREQAIAMLNDIRASIRTPEDFARVAQTASDCSSARNGGDLGEFGPGQMQ 80
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BLAST of mRNA_H-canaliculatus_F_contig15160.3860.1 vs. uniprot
Match: A0A835Z2P5_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2P5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.480e-19
Identity = 48/83 (57.83%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:   19 VTARHILVKHKGSRRPVSWQDPSGASIKQRNVAQATNMLQNLRPSI---KSQDDFSKAAVARSDCSSAKRGGDLGTFPRGKMQ 258
            V ARHILVKH+ SR P S++D  GA I+ R  A A   LQ L   +    S+ DF+KAA   SDCSSAKRGGDLG F RGKMQ
Sbjct:    1 VRARHILVKHQRSRNPTSFRDRDGAGIRARTRAAAAATLQQLASQLGDAPSEADFAKAAADVSDCSSAKRGGDLGVFARGKMQ 83
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BLAST of mRNA_H-canaliculatus_F_contig15160.3860.1 vs. uniprot
Match: D8RQS5_SELML (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RQS5_SELML)

HSP 1 Score: 82.0 bits (201), Expect = 2.980e-18
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   16 EVTARHILVKHKGSRRPVSWQDPSGASIKQRNVAQATNMLQNLRPSIKS-QDDFSKAAVARSDCSSAKRGGDLGTFPRGKMQ 258
            +V A H+LVKH+GSRRP SW+DP G  I+     QA   L+++R  I S +  FS  A   SDCSSAKRGGDLG F RG+MQ
Sbjct:   10 KVRASHLLVKHQGSRRPASWRDPEGLVIQNTTHEQAVAKLEHIRDEILSGRAKFSDLATQLSDCSSAKRGGDLGWFGRGQMQ 91
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BLAST of mRNA_H-canaliculatus_F_contig15160.3860.1 vs. uniprot
Match: UPI0009014F9B (peptidyl-prolyl cis-trans isomerase Pin1 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009014F9B)

HSP 1 Score: 80.9 bits (198), Expect = 8.050e-18
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   16 EVTARHILVKHKGSRRPVSWQDPSGASIKQRNVAQATNMLQNLRPSIKS-QDDFSKAAVARSDCSSAKRGGDLGTFPRGKMQ 258
            +V A HIL+KH+GSRR  SW+DP GA I +    +A   L+ LR  I S + DF+  A   SDCSSAKRGGDLG F RG+MQ
Sbjct:    8 KVRASHILIKHQGSRRKSSWKDPEGAVISKTTRDEAVAQLKALRDDIVSGKADFNDVAARYSDCSSAKRGGDLGPFGRGQMQ 89
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BLAST of mRNA_H-canaliculatus_F_contig15160.3860.1 vs. uniprot
Match: A0A804M8S2_MAIZE (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Zea mays TaxID=4577 RepID=A0A804M8S2_MAIZE)

HSP 1 Score: 82.8 bits (203), Expect = 9.590e-18
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   16 EVTARHILVKHKGSRRPVSWQDPSGASIKQRNVAQATNMLQNLRPSIKSQD-DFSKAAVARSDCSSAKRGGDLGTFPRGKMQ 258
            +V A HIL+KH+GSRR  SW+DP G +I       A ++ + LR  I S D +F   A   SDCSSAKRGGDLG+F RGKMQ
Sbjct:   90 KVRASHILIKHEGSRRKASWRDPEGVAISATTRDDAADLARALRDQIVSGDREFEDVAAENSDCSSAKRGGDLGSFGRGKMQ 171
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BLAST of mRNA_H-canaliculatus_F_contig15160.3860.1 vs. uniprot
Match: S8C092_9LAMI (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C092_9LAMI)

HSP 1 Score: 80.5 bits (197), Expect = 1.030e-17
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   16 EVTARHILVKHKGSRRPVSWQDPSGASIKQRNVAQATNMLQNLRPSIKSQD-DFSKAAVARSDCSSAKRGGDLGTFPRGKMQ 258
            +V A HIL+KH+GSRR  SW+DP GA I    +  A + L++LR  I S D  F   A   S CSSAKRGGDLG+F RG+MQ
Sbjct:    4 KVRAYHILIKHQGSRRKSSWKDPDGALISSTTLEDAVSQLRDLRSQIVSGDASFQDLASKHSHCSSAKRGGDLGSFGRGQMQ 85
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BLAST of mRNA_H-canaliculatus_F_contig15160.3860.1 vs. uniprot
Match: A0A843V534_COLES (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843V534_COLES)

HSP 1 Score: 80.5 bits (197), Expect = 1.170e-17
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:   16 EVTARHILVKHKGSRRPVSWQDPSGASIKQRNVAQATNMLQNLRPSIKS-QDDFSKAAVARSDCSSAKRGGDLGTFPRGKMQ 258
            +V+A HIL+KH+GSRR  SWQDP G  I+      A   L+ LR  I S +  F   A   SDCS+AKRGGDLG F RG+MQ
Sbjct:    9 QVSASHILIKHEGSRRKASWQDPDGVRIRSTTRDSAVEQLRALREEIASGKASFEDVASRHSDCSTAKRGGDLGPFKRGQMQ 90
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BLAST of mRNA_H-canaliculatus_F_contig15160.3860.1 vs. uniprot
Match: UPI00098DA1FE (peptidyl-prolyl cis-trans isomerase Pin1 n=1 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098DA1FE)

HSP 1 Score: 80.1 bits (196), Expect = 1.840e-17
Identity = 45/82 (54.88%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:   16 EVTARHILVKHKGSRRPVSWQDPSGASIKQRNVAQATNMLQNLRPSIKS-QDDFSKAAVARSDCSSAKRGGDLGTFPRGKMQ 258
            EV A HIL+KH+GSRR  SW+DP G+ IK      A + L  LR  I S +  F   A   SDCSSAKRGGDLG F RG+MQ
Sbjct:   13 EVRASHILIKHQGSRRKASWKDPEGSIIKSTTKESAVSQLNALRDDIVSGKASFEDLASRFSDCSSAKRGGDLGPFGRGQMQ 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15160.3860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0K6_ECTSI3.780e-3982.93Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A6H5K9M4_9PHAE4.870e-3581.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CKW2_9STRA1.780e-2257.69Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A835Z2P5_9STRA8.480e-1957.83Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
D8RQS5_SELML2.980e-1854.88Peptidyl-prolyl cis-trans isomerase n=1 Tax=Selagi... [more]
UPI0009014F9B8.050e-1854.88peptidyl-prolyl cis-trans isomerase Pin1 n=2 Tax=I... [more]
A0A804M8S2_MAIZE9.590e-1853.66Peptidyl-prolyl cis-trans isomerase n=3 Tax=Zea ma... [more]
S8C092_9LAMI1.030e-1753.66Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A843V534_COLES1.170e-1752.44Peptidyl-prolyl cis-trans isomerase n=1 Tax=Coloca... [more]
UPI00098DA1FE1.840e-1754.88peptidyl-prolyl cis-trans isomerase Pin1 n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15160contigH-canaliculatus_F_contig15160:1730..2305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue8.5e-30
Seed eggNOG ortholog2880.D7G0K6
Preferred nameESS1
KEGG koko:K02887,ko:K09578
KEGG Pathwayko03010,ko04622,map03010,map04622
KEGG ModuleM00178
GOsGO:0000122,GO:0000413,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005886,GO:0005911,GO:0006139,GO:0006325,GO:0006351,GO:0006353,GO:0006355,GO:0006357,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006457,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0009058,GO:0009059,GO:0009506,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009909,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016569,GO:0016570,GO:0016571,GO:0016853,GO:0016859,GO:0018022,GO:0018023,GO:0018130,GO:0018193,GO:0018205,GO:0018208,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0030054,GO:0030162,GO:0031056,GO:0031057,GO:0031063,GO:0031064,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031334,GO:0031399,GO:0031400,GO:0031401,GO:0031935,GO:0031937,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032774,GO:0032784,GO:0032879,GO:0032880,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034968,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0036211,GO:0042176,GO:0042177,GO:0042325,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043412,GO:0043414,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045861,GO:0045892,GO:0045893,GO:0045898,GO:0045899,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051726,GO:0055044,GO:0060255,GO:0060260,GO:0060261,GO:0060968,GO:0061187,GO:0065007,GO:0070063,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080182,GO:0090304,GO:0090311,GO:0097659,GO:0140096,GO:1901360,GO:1901362,GO:1901407,GO:1901564,GO:1901576,GO:1902275,GO:1902679,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1905269,GO:2000026,GO:2000058,GO:2000059,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2000241,GO:2000749,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.positive regulation of chromatin silencing at rDNA
EggNOG OGsCOG0760@1,KOG3259@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03021,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929257.267402-CDS-H-canaliculatus_F_contig15160:1729..18361622929257.267402-CDS-H-canaliculatus_F_contig15160:1729..1836Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15160 1730..1836 +
1696845739.2744539-CDS-H-canaliculatus_F_contig15160:1729..18361696845739.2744539-CDS-H-canaliculatus_F_contig15160:1729..1836Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15160 1730..1836 +
1622929257.2802868-CDS-H-canaliculatus_F_contig15160:2154..23051622929257.2802868-CDS-H-canaliculatus_F_contig15160:2154..2305Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15160 2155..2305 +
1696845739.3063774-CDS-H-canaliculatus_F_contig15160:2154..23051696845739.3063774-CDS-H-canaliculatus_F_contig15160:2154..2305Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15160 2155..2305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15160.3860.1prot_H-canaliculatus_F_contig15160.3860.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15160 1730..2305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15160.3860.1

>prot_H-canaliculatus_F_contig15160.3860.1 ID=prot_H-canaliculatus_F_contig15160.3860.1|Name=mRNA_H-canaliculatus_F_contig15160.3860.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=86bp
MKMPTEVTARHILVKHKGSRRPVSWQDPSGASIKQRNVAQATNMLQNLRP
SIKSQDDFSKAAVARSDCSSAKRGGDLGTFPRGKMQ
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mRNA from alignment at H-canaliculatus_F_contig15160:1730..2305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15160.3860.1 ID=mRNA_H-canaliculatus_F_contig15160.3860.1|Name=mRNA_H-canaliculatus_F_contig15160.3860.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=576bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15160:1730..2305+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGATGCCCACCGAAGTCACAGCGAGGCACATCTTGGTGAAGCACAA
GGGGTCGAGGCGCCCGGTCTCCTGGCAGGACCCCTCCGGAGCTTCCATCA
AGCAGAGGTTTGTTGCGGTCGTCGATGGTCCGGTGGTGGTGGTGACAGCG
TTACGTCTGATGTCGGTGTAGTACCCGTAACGCGTGTCGGCGCCAACCAA
ACCCCTCTGGTAGATGGGCTACTGTTGCTTCTTTCTCTGGTGTTGCTGTT
GCATGCCTGCCTTGTGTTTTCCATCAAAAAAAGGGTTAAAAACCTGCCGG
TCGCTCGATCCTCGATCACAGATGAAGCCACAGTGCCTCCCCTGCGTCCC
TCGGATCAGCCCGGAAGCCAACACACGTGCGTTTTCAACCTCGAACACAC
GCGCGCGCGCTCCCGCCGTCGACAGGAACGTGGCCCAGGCGACGAACATG
CTGCAGAACCTCCGGCCCAGCATCAAGAGCCAGGACGACTTCTCCAAGGC
GGCCGTGGCCAGGTCCGACTGCTCCAGCGCCAAGCGGGGAGGGGACCTCG
GCACTTTCCCCCGCGGCAAGATGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15160:1730..2305+

>mRNA_H-canaliculatus_F_contig15160.3860.1 ID=mRNA_H-canaliculatus_F_contig15160.3860.1|Name=mRNA_H-canaliculatus_F_contig15160.3860.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=516bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15160:1730..2305+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGATGCCCACCGAAGTCACAGCGAGGCACATCTTGGTGAAGCACAA
GGGGTCGAGGCGCCCGGTCTCCTGGCAGGACCCCTCCGGAGCTTCCATCA
AGCAGAGATGAAGATGCCCACCGAAGTCACAGCGAGGCACATCTTGGTGA
AGCACAAGGGGTCGAGGCGCCCGGTCTCCTGGCAGGACCCCTCCGGAGCT
TCCATCAAGCAGAGGAACGTGGCCCAGGCGACGAACATGCTGCAGAACCT
CCGGCCCAGCATCAAGAGCCAGGACGACTTCTCCAAGGCGGCCGTGGCCA
GGTCCGACTGCTCCAGCGCCAAGCGGGGAGGGGACCTCGGCACTTTCCCC
CGCGGCAAGATGCAGGAACGTGGCCCAGGCGACGAACATGCTGCAGAACC
TCCGGCCCAGCATCAAGAGCCAGGACGACTTCTCCAAGGCGGCCGTGGCC
AGGTCCGACTGCTCCAGCGCCAAGCGGGGAGGGGACCTCGGCACTTTCCC
CCGCGGCAAGATGCAG
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