mRNA_H-canaliculatus_F_contig15153.3856.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15153.3856.1
Unique NamemRNA_H-canaliculatus_F_contig15153.3856.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15153.3856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15153contigH-canaliculatus_F_contig15153:1191..1957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size751
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15153.3856.1prot_H-canaliculatus_F_contig15153.3856.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15153 1399..1801 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.9949512-UTR-H-canaliculatus_F_contig15153:1190..13981622929256.9949512-UTR-H-canaliculatus_F_contig15153:1190..1398Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15153 1191..1398 -
1696845739.1535366-UTR-H-canaliculatus_F_contig15153:1190..13981696845739.1535366-UTR-H-canaliculatus_F_contig15153:1190..1398Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15153 1191..1398 -
1622929257.037588-UTR-H-canaliculatus_F_contig15153:1801..19571622929257.037588-UTR-H-canaliculatus_F_contig15153:1801..1957Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15153 1802..1957 -
1696845739.1850443-UTR-H-canaliculatus_F_contig15153:1801..19571696845739.1850443-UTR-H-canaliculatus_F_contig15153:1801..1957Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15153 1802..1957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929257.0117812-CDS-H-canaliculatus_F_contig15153:1398..15211622929257.0117812-CDS-H-canaliculatus_F_contig15153:1398..1521Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15153 1399..1521 -
1696845739.164421-CDS-H-canaliculatus_F_contig15153:1398..15211696845739.164421-CDS-H-canaliculatus_F_contig15153:1398..1521Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15153 1399..1521 -
1622929257.0246289-CDS-H-canaliculatus_F_contig15153:1537..18011622929257.0246289-CDS-H-canaliculatus_F_contig15153:1537..1801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15153 1538..1801 -
1696845739.1759682-CDS-H-canaliculatus_F_contig15153:1537..18011696845739.1759682-CDS-H-canaliculatus_F_contig15153:1537..1801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15153 1538..1801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15153.3856.1

>prot_H-canaliculatus_F_contig15153.3856.1 ID=prot_H-canaliculatus_F_contig15153.3856.1|Name=mRNA_H-canaliculatus_F_contig15153.3856.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=129bp
MFPRRTSSASSVSMSSSVSVSSPEGRGEDREEERDEEEVEEEEEEGFGHR
RRRRRRRMVPSAERFSAASTATSPWNPSSGPGGTAAAARRQRQHQHQHQR
QCYRQQRRQHRQGRLRPMLSSARRRRRP*
back to top

mRNA from alignment at H-canaliculatus_F_contig15153:1191..1957-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15153.3856.1 ID=mRNA_H-canaliculatus_F_contig15153.3856.1|Name=mRNA_H-canaliculatus_F_contig15153.3856.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=767bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15153:1191..1957- (Hapterophycus canaliculatus Oshoro5f female)
CGCAGAACGACGCCCTGGACCACCAGAGCAGCGGCGGCGGACGCGGCCGC
CTCGTCCACGAGGGCCGTTGCCGTCGCAGCCGGCGCTTCCACTACCGCTA
CCACCGCTTCGGCTCCTGCGGCGGCCGCGGAGGCGTCGTCGCTACCACCG
TCGTCGATGTTTCCGAGGAGGACGTCATCGGCTTCATCGGTCTCGATGTC
GTCGTCGGTTTCGGTCTCTTCCCCAGAAGGGCGTGGGGAGGATAGAGAGG
AAGAGCGAGACGAGGAAGAGGTAGAGGAGGAGGAGGAGGAAGGCTTCGGG
CACCGGAGGCGGAGGCGGCGGCGACGGATGGTGCCCTCCGCGGAACGGTT
CTCGGCCGCGTCCACGGCCACGAGCCCCTGGAACCCTTCTTCTGGACCGG
GAGGGACGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGACAGCGGCA
GCACCAGCACCAGCACCAGCGCCAGTGCTACCGGCAGCAGCGCCGGCAGC
ACCGGCAGGGGCGACTTCGACCTATGTTGTCGTCGGCACGCCGTCGCCGC
CGACCATGATGACGACACCTCCGTCGGCGGCTGCGGGGAGGAGGGGAAGG
GGCAGGGGGGTGTTTTTCTCCAGGTCGGCGTCTCCTTCGACGGCGAGCTC
GACGACTAGGTTGGCCTCCTCCCGGCGCACGCGAATAAACCAGCAGTACC
GGCAACGACAGCAGCAGGATCTGCAAGAGCAGTTTCATCAGCAACAGCAC
CCCCACCTGTTGCTGCT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15153:1191..1957-

>mRNA_H-canaliculatus_F_contig15153.3856.1 ID=mRNA_H-canaliculatus_F_contig15153.3856.1|Name=mRNA_H-canaliculatus_F_contig15153.3856.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=774bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15153:1191..1957- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTTCCGAGGAGGACGTCATCGGCTTCATCGGTCTCGATGTCGTCGTC
GGTTTCGGTCTCTTCCCCAGAAGGGCGTGGGGAGGATAGAGAGGAAGAGC
GAGACGAGGAAGAGGTAGAGGAGGAGGAGGAGGAAGGCTTCGGGCACCGG
AGGCGGAGGCGGCGGCGACGGATGGTGCCCTCCGCGGAACGGTTCTCGGC
CGCGTCCACGGCCACGAGCCCCTGGAACCCTTCTTCTGGACCGGGAGGGA
CGGCGGCGGCGGCGATGTTTCCGAGGAGGACGTCATCGGCTTCATCGGTC
TCGATGTCGTCGTCGGTTTCGGTCTCTTCCCCAGAAGGGCGTGGGGAGGA
TAGAGAGGAAGAGCGAGACGAGGAAGAGGTAGAGGAGGAGGAGGAGGAAG
GCTTCGGGCACCGGAGGCGGAGGCGGCGGCGACGGATGGTGCCCTCCGCG
GAACGGTTCTCGGCCGCGTCCACGGCCACGAGCCCCTGGAACCCTTCTTC
TGGACCGGGAGGGACGGCGGCGGCGGCGCGGCGACAGCGGCAGCACCAGC
ACCAGCACCAGCGCCAGTGCTACCGGCAGCAGCGCCGGCAGCACCGGCAG
GGGCGACTTCGACCTATGTTGTCGTCGGCACGCCGTCGCCGCCGACCATG
ACGGCGACAGCGGCAGCACCAGCACCAGCACCAGCGCCAGTGCTACCGGC
AGCAGCGCCGGCAGCACCGGCAGGGGCGACTTCGACCTATGTTGTCGTCG
GCACGCCGTCGCCGCCGACCATGA
back to top