mRNA_H-canaliculatus_F_contig15147.3851.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig15147.3851.1 vs. uniprot
Match: A0A6H5L7R8_9PHAE (ERCC4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7R8_9PHAE) HSP 1 Score: 456 bits (1172), Expect = 1.120e-154 Identity = 255/350 (72.86%), Postives = 274/350 (78.29%), Query Frame = 1
Query: 1 QSSLLQKGVRCETRQLPLGDMLWIARRTDDPTSEVLLGYIVERKTASDLASSIIDGRYDEQKRRLKLSGLRRRIYLVEGNLSHQSQLAPSALRSALASSQACGGLAVVQCDSLRDSVDFLARTHRHIASLLENTCKSHAATGVEGGGGGEVRGAGLWPETGSGARDGDTGGGAMLLPAMTYGEYAQGCAKRAGSTTARRVLGAMVRQAPGCSATRAEAIVRAFESPLGLMLALEHAAGKGGGGGEDGVDSDDVARMKKADDLLAGLVCRGGAGTNKLPQPLRRLLCRLFLAESVD---GGVSGGGAG--GRPKQATDDHSNSIMSCDLLGRDPYCADGWDAEPMSQDDPY 1035
QSSLLQKG+RCETRQLPLGDMLWIAR+ DDPTSEVLLGYIVERKTASDLASSIIDGRY+EQKRRLKLSGLRRRIYLVEGNL+HQ QLAP+ALR+AL SSQACGGLAVVQCD LRD+V+FLARTHRHIASLLE +C+ R AGL P GS R+ +GG AML PAMTYGEYAQGCAKRAGSTT R+VLGAMVRQAPGCSA RAEAIVRAF+SPLGLMLALE AA DG+ DD ARMK+AD LL GLVC GGAGTNKLPQPLRRLLCRLFL +SVD G S GG G G P A + DL PYC DGWD EPM+QDDPY
Sbjct: 265 QSSLLQKGIRCETRQLPLGDMLWIARKRDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDGLRDTVNFLARTHRHIASLLELSCR---------------REAGLSPVRGS--RE-CSGGRAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASG------DGIAGDDAARMKRADALLGGLVCSGGAGTNKLPQPLRRLLCRLFLGDSVDDEGAGASAGGVGAAGPPTAAGGYGRRGHSNADLSVGGPYCVDGWDVEPMNQDDPY 590
BLAST of mRNA_H-canaliculatus_F_contig15147.3851.1 vs. uniprot
Match: A0A836CKB8_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKB8_9STRA) HSP 1 Score: 162 bits (410), Expect = 4.170e-44 Identity = 102/240 (42.50%), Postives = 136/240 (56.67%), Query Frame = 1
Query: 1 QSSLLQKGVRCETRQLPLGDMLWIARRTDDPT----SEVLLGYIVERKTASDLASSIIDGRYDEQKRRLKLSGLRRRIYLVEGNLSHQSQLAPSALRSALASSQACGGLAVVQCDSLRDSVDFLARTHRHIASLLENTCKSHAATGVEGGGGGEVRGAGLWPETGSGARDGDTGGGAMLLPAMTYGEYAQGCAKRAGSTTARRVLGAMVRQAPGCSATRAEAIVRAFESPLGLMLALEHA 708
Q+++L + CE R LPLGDMLW+AR D + EVLLGYIVERKTASDL SS++DGR+ EQK R+ GL R IYLVEG ++H ++L P+ LR+A+A +QA G+ V+ ++ +SV L R HRHIA+ LE C+ A+ P TG + P M+ +Y C K R V G +RQ GCSA RA AI+ + +PL MLA+E A
Sbjct: 30 QAAVLNANMLCEVRSLPLGDMLWVARNMDRQSPSYLQEVLLGYIVERKTASDLGSSMVDGRFHEQKHRMARHGLGRVIYLVEGPITHTTRLTPAHLRTAMAHTQAQDGMTVLWTANVTESVAHLQRVHRHIAASLEAACRGITASA---------------PGTG-------------VRPIMSMDQYRAQCGKGKDGDV-RYVFGCQLRQVYGCSAARAAAILNEYPTPLDFMLAMEAA 240
BLAST of mRNA_H-canaliculatus_F_contig15147.3851.1 vs. uniprot
Match: A0A7S3XK47_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XK47_HETAK) HSP 1 Score: 120 bits (302), Expect = 2.830e-28 Identity = 94/263 (35.74%), Postives = 124/263 (47.15%), Query Frame = 1
Query: 1 QSSLLQKGVRCETRQLPLGDMLWIAR------RTDDPTSEVL--------------------------LGYIVERKTASDLASSIIDGRYDEQKRRLKLSGLRRRIYLVEGNLSHQSQLAPSALRSALASSQACGGLAVVQCDSLRDSVDFLARTHRHIASLLENTCKSHAATGVEGGGGGEVRGAGLWPETGSGARDGDT-GGGAMLLPAMTYGEYAQGCAKRAGSTTARRVLGAMVRQAPGCSATRAEAIVRAFESPLGLM 690
Q+ LL GV CE QL +GDM+W AR D P ++ L LG++VERKTA DLA SIIDGRY EQK RLK SGL + YLVEG+LS Q L +LR+A+AS+ G +V +C +L +SV +LARTH +A L + A+ GD +LP MTY Y C K + + G ++Q PG S + +AI+ F +P LM
Sbjct: 3 QAKLLAVGVACEVGQLAVGDMVWAARWRRPGWHADIPLTQTLNQPQKKKSKSTATILENLHKNEELFVLGFVVERKTAEDLAKSIIDGRYAEQKVRLKKSGLSKVTYLVEGSLSGQDVLPTKSLRTAMASTLIQHGFSVQRCANLDESVRWLARTHHQVARQLGYAVAA--------------------------AQSGDPLDSFKAVLPVMTYRHYHDQCGKLKAQKV-QDIFGMQLKQFPGMSVGKIQAILERFPTPQRLM 238
BLAST of mRNA_H-canaliculatus_F_contig15147.3851.1 vs. uniprot
Match: A0A7R9UCP7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCP7_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.590e-24 Identity = 67/133 (50.38%), Postives = 88/133 (66.17%), Query Frame = 1
Query: 1 QSSLLQKGVRCETRQLPLGDMLWIA--RRTDDPTSEVLLGYIVERKTASDLASSIIDGRYDEQKRRLKLSGLRRRIYLVEGNLSHQSQLAPSALRSALASSQACGGLAVVQCDSLRDSVDFLARTHRHIASLL 393
QS LLQ+GV CE R L LGDM+WIA RR+D E +L +I+ERK+A+DLA SIIDGRY EQK RL+ SG+ YLVEG S Q +L ALR+A+A ++ G V+ +++ S + L R H I SL+
Sbjct: 451 QSHLLQRGVSCENRALHLGDMIWIAQDRRSD---VEYVLDFIIERKSAADLAESIIDGRYAEQKSRLRASGIGHVTYLVEGAASSQERLPKQALRTAMAETRVLPGFRVLHTNNIAQSAEELRRMHEQIKSLM 580
BLAST of mRNA_H-canaliculatus_F_contig15147.3851.1 vs. uniprot
Match: A0A665VS24_ECHNA (MUS81 structure-specific endonuclease subunit n=3 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665VS24_ECHNA) HSP 1 Score: 107 bits (268), Expect = 4.000e-22 Identity = 84/253 (33.20%), Postives = 121/253 (47.83%), Query Frame = 1
Query: 10 LLQKGVRCETRQLPLGDMLWIARRTDDPTS---------EVLLGYIVERKTASDLASSIIDGRYDEQKRRLKLSGLRRRIYLVE--GNLSHQSQLAPSALRSALASSQACGGLAVVQCDSLRDSVDFLARTHRHIASLLEN---TCKSHAATGVEGGGGGEVRGAGLWPETGSGARDGDTGGGAMLLPA---MTYGEYAQGCAKRAGSTTARRVLGAMVRQAPGCSATRAEAIVRAFESPLGLMLALEHAAGK 717
L + GV + R+L +GD LW+AR P E+ L YI+ERK DL SIIDGR+ EQK RLK GLRR IYLVE G + L + L+ A+ ++Q G V + +R+S +L R++ L +N +C+S G E A D + GG +LP+ +++ E+ G K S T R V + Q G S +A AI+ + +P L+ A E AG+
Sbjct: 322 LQRNGVNFDVRKLNVGDFLWVAREKVAPIPGQLRAPTGRELALDYIIERKRIDDLCGSIIDGRFREQKFRLKRCGLRRPIYLVEECGTAASHLSLPEATLKQAIINTQVVDGFFVKRVQDVRESAAYLTVMTRYLTKLYQNRTLSCRSRELEGDE-------------------AADEEEGG---ILPSCSLLSFAEFNYGAVKNK-SQTVREVFARQLMQISGLSGDKAAAILEQYNTPHSLLSAYERCAGE 551
BLAST of mRNA_H-canaliculatus_F_contig15147.3851.1 vs. uniprot
Match: A0A3B3HWT0_ORYLA (MUS81 structure-specific endonuclease subunit n=7 Tax=Oryzias latipes TaxID=8090 RepID=A0A3B3HWT0_ORYLA) HSP 1 Score: 104 bits (260), Expect = 5.060e-21 Identity = 81/245 (33.06%), Postives = 117/245 (47.76%), Query Frame = 1
Query: 10 LLQKGVRCETRQLPLGDMLWIARRTDDPTS---------EVLLGYIVERKTASDLASSIIDGRYDEQKRRLKLSGLRRRIYLVEGNLSHQSQLA-PSA-LRSALASSQACGGLAVVQCDSLRDSVDFLARTHRHIASLLENTCKSHAATGVEGGGGGEVRGAGLWPETGSGARDGDTGGGAMLLPAMTYGEYAQGCAKRAGSTTARRVLGAMVRQAPGCSATRAEAIVRAFESPLGLMLALEHAA 711
L + GVR + R+L +GD LW+AR P E++L YI+ERK DL SIIDGR+ EQK RLK GLR+ IYLVEG + S L+ P A L+ A+ ++Q G V + +R+S +L RH+ L +N S + EG A D + L M++ E+ G K T R V + Q G S +A AI++ + +P L+ A + +
Sbjct: 388 LQRNGVRFDVRKLNVGDFLWVARENMAPVPGQLRAPAGRELVLDYIIERKRMDDLCGSIIDGRFREQKFRLKRCGLRKPIYLVEGGSTAASHLSLPEATLQQAIVNTQVVDGFFVKRVQDVRESAAYLTVMTRHLTKLYQNCTLSRRSREQEG----------------DAASDEEATASCSL---MSFAEFNHGAVKNK-CQTVREVFARQLMQISGLSGDKAAAILQHYSTPYSLLSAYDRCS 612
BLAST of mRNA_H-canaliculatus_F_contig15147.3851.1 vs. uniprot
Match: A0A067BND5_SAPPC (ERCC4 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BND5_SAPPC) HSP 1 Score: 102 bits (254), Expect = 6.110e-21 Identity = 89/243 (36.63%), Postives = 117/243 (48.15%), Query Frame = 1
Query: 10 LLQKGVRCETRQLPLGDMLWIARRTDDPT-------SEVLLGYIVERKTASDLASSIIDGRYDEQKRRLKLSGLRRRIYLVEGNLSHQSQLAPSALRSALASSQACGGLAVVQCDSLRDSVDFLARTHRHIASLLENTCKSHAATGVEGGGGGEVRGAGLWPETGSGARDGDTGGGAMLLPA--MTYGEYAQGCAKRAGSTTARRVLGAMVRQAPGCSATRAEAIVRAFESPLGLMLALEHAA 711
LL+ GV CE R L LGDM+WIARR PT E +L IVERK SDLA SIID RY EQK+RL +GLR +YL+EG+L+ ++ L +AL +AL +Q V S ++V FL+ H H K VR A G L+P ++GE+ + K+A TT + M+ Q PG SATRA + A + L L + AA
Sbjct: 109 LLEAGVTCEVRGLHLGDMMWIARR-HRPTFGGRAIEEEFVLDVIVERKAVSDLALSIIDKRYTEQKQRLADAGLRYVVYLLEGSLAVETILGATALATALTRTQVLNNYLVHHAASPDETVAFLSALHWHTVRAFSAVYK--------------VRNAAPPTAASIGRLPACLRDFTQLIPTTWQSFGEFNETFRKKAAPTTGE-LYQMMLMQVPGISATRARDLGAAHPTFLSLWQETQKAA 335
BLAST of mRNA_H-canaliculatus_F_contig15147.3851.1 vs. uniprot
Match: A0A3P9L8A6_ORYLA (MUS81 structure-specific endonuclease subunit n=5 Tax=Oryzias latipes TaxID=8090 RepID=A0A3P9L8A6_ORYLA) HSP 1 Score: 104 bits (260), Expect = 6.220e-21 Identity = 81/245 (33.06%), Postives = 117/245 (47.76%), Query Frame = 1
Query: 10 LLQKGVRCETRQLPLGDMLWIARRTDDPTS---------EVLLGYIVERKTASDLASSIIDGRYDEQKRRLKLSGLRRRIYLVEGNLSHQSQLA-PSA-LRSALASSQACGGLAVVQCDSLRDSVDFLARTHRHIASLLENTCKSHAATGVEGGGGGEVRGAGLWPETGSGARDGDTGGGAMLLPAMTYGEYAQGCAKRAGSTTARRVLGAMVRQAPGCSATRAEAIVRAFESPLGLMLALEHAA 711
L + GVR + R+L +GD LW+AR P E++L YI+ERK DL SIIDGR+ EQK RLK GLR+ IYLVEG + S L+ P A L+ A+ ++Q G V + +R+S +L RH+ L +N S + EG A D + L M++ E+ G K T R V + Q G S +A AI++ + +P L+ A + +
Sbjct: 365 LQRNGVRFDVRKLNVGDFLWVARENMAPVPGQLRAPAGRELVLDYIIERKRMDDLCGSIIDGRFREQKFRLKRCGLRKPIYLVEGGSAAASHLSLPEATLQQAIVNTQVVDGFFVKRVQDVRESAAYLTVMTRHLTKLYQNCTLSRRSREQEG----------------DAASDEEATASCSL---MSFAEFNHGAVKNK-CQTVREVFARQLMQISGLSGDKAAAILQHYSTPYSLLSAYDRCS 589
BLAST of mRNA_H-canaliculatus_F_contig15147.3851.1 vs. uniprot
Match: UPI001ED82114 (crossover junction endonuclease MUS81 n=1 Tax=Scatophagus argus TaxID=75038 RepID=UPI001ED82114) HSP 1 Score: 104 bits (259), Expect = 6.300e-21 Identity = 92/302 (30.46%), Postives = 133/302 (44.04%), Query Frame = 1
Query: 10 LLQKGVRCETRQLPLGDMLWIARRTDDPTS---------EVLLGYIVERKTASDLASSIIDGRYDEQKRRLKLSGLRRRIYLVE--GNLSHQSQLAPSALRSALASSQACGGLAVVQCDSLRDSVDFLARTHRHIASLLENTCKSHAATGVEGGGGGEVRGAGLWPETGSGARDGDTGGGAMLLPAMTYGEYAQGCAKRAGSTTARRVLGAMVRQAPGCSATRAEAIVRAFESPLGLMLALEHAAGKGGGGGEDGVDSDDVARMKKADDLLAGLVCRGGAGTNKLPQPLRRLLCRLFLAESV 882
L + GV + R+L +GD LW+AR +P E++L YIVERK DL SIIDGR+ EQK RLK GLRR IYLVE G + L S L+ A+ ++Q G V + +R+S +L RH+ L +N + +EG GG + G + L +++ E+ G K T R V + Q G S +A AI+ + SP L+ A E V+ K + LL+ + R G L L R +C+L+ +
Sbjct: 340 LQRNGVNFDVRKLNVGDFLWVAREKVEPVPGQLRAPAGRELVLDYIVERKRMDDLCGSIIDGRFREQKFRLKRCGLRRPIYLVEECGTAASHLSLPESTLQQAIVNTQVVDGFFVKRVQDVRESAAYLTVMTRHLTKLYQNCTLICRSRELEGDGGSDXX---------------XXXGPSCSL--ISFAEFNHGAVKNK-CQTVREVFARQLMQISGLSGDKAAAILEHYNSPHSLLTAYEQC----------------VSEADK-EKLLSSI--RYGKLKRNLGPALSRTVCQLYCTQGA 604
BLAST of mRNA_H-canaliculatus_F_contig15147.3851.1 vs. uniprot
Match: A0A1C7NCE9_9FUNG (Crossover junction endonuclease MUS81 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NCE9_9FUNG) HSP 1 Score: 103 bits (258), Expect = 1.130e-20 Identity = 83/243 (34.16%), Postives = 121/243 (49.79%), Query Frame = 1
Query: 1 QSSLLQKGVRCETRQLPLGDMLWIARRTDDPTSEVLLGYIVERKTASDLASSIIDGRYDEQKRRLKLSGLRRRIYLVEG-NLSHQSQLAPSALRSALASSQACGGLAVVQCDSLRDSVDFLARTHRHIASLLENT----CKSHAAT-----GVEGGGGGEVRGAGLWPETGSGARDGDTGGGAMLLPAMTYGEYAQGCAKRAGSTTARRVLGAMVRQAPGCSATRAEAIVRAFESPLGLMLAL 699
+ +L KGV C TR L LGD +WIAR +P E+ L YIVERK DL SSI DGR+ EQK RLK SG + IY+VE N + A+++A++S+Q G+ + + S+ D++D+L R I + NT SH T G++G P R G+ + +TY Y Q AK GS + V M+ G +A RA ++++ + +P L+ A
Sbjct: 719 EQTLTAKGVSCITRSLDLGDAIWIARSKSNPPQELFLDYIVERKRLDDLVSSIKDGRFTEQKLRLKRSGAEKLIYVVEEYNREEAERFGAQAIQTAMSSTQIIDGIFLKRTSSIDDTIDYLVSITRLIERIYRNTRLYIIPSHLITRQNYLGLKG----------ACPR-----RQGE------IAYVITYTLYNQLNAKN-GSASLHEVYLRMLMTIRGVNAERALSLMKIYPTPRSLLEAF 939 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15147.3851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig15147.3851.1 >prot_H-canaliculatus_F_contig15147.3851.1 ID=prot_H-canaliculatus_F_contig15147.3851.1|Name=mRNA_H-canaliculatus_F_contig15147.3851.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=346bp QSSLLQKGVRCETRQLPLGDMLWIARRTDDPTSEVLLGYIVERKTASDLAback to top mRNA from alignment at H-canaliculatus_F_contig15147:347..1891- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig15147.3851.1 ID=mRNA_H-canaliculatus_F_contig15147.3851.1|Name=mRNA_H-canaliculatus_F_contig15147.3851.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1545bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15147:347..1891- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15147:347..1891- >mRNA_H-canaliculatus_F_contig15147.3851.1 ID=mRNA_H-canaliculatus_F_contig15147.3851.1|Name=mRNA_H-canaliculatus_F_contig15147.3851.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2076bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15147:347..1891- (Hapterophycus canaliculatus Oshoro5f female)back to top |