mRNA_H-canaliculatus_F_contig15124.3845.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15124.3845.1
Unique NamemRNA_H-canaliculatus_F_contig15124.3845.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15124.3845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15124contigH-canaliculatus_F_contig15124:1797..2390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size568
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15124.3845.1prot_H-canaliculatus_F_contig15124.3845.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15124 2010..2390 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.0443876-UTR-H-canaliculatus_F_contig15124:1796..20091622929255.0443876-UTR-H-canaliculatus_F_contig15124:1796..2009Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15124 1797..2009 -
1696845738.1421432-UTR-H-canaliculatus_F_contig15124:1796..20091696845738.1421432-UTR-H-canaliculatus_F_contig15124:1796..2009Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15124 1797..2009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.0573993-CDS-H-canaliculatus_F_contig15124:2009..21001622929255.0573993-CDS-H-canaliculatus_F_contig15124:2009..2100Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15124 2010..2100 -
1696845738.1502817-CDS-H-canaliculatus_F_contig15124:2009..21001696845738.1502817-CDS-H-canaliculatus_F_contig15124:2009..2100Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15124 2010..2100 -
1622929255.071683-CDS-H-canaliculatus_F_contig15124:2127..23901622929255.071683-CDS-H-canaliculatus_F_contig15124:2127..2390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15124 2128..2390 -
1696845738.1584527-CDS-H-canaliculatus_F_contig15124:2127..23901696845738.1584527-CDS-H-canaliculatus_F_contig15124:2127..2390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15124 2128..2390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15124.3845.1

>prot_H-canaliculatus_F_contig15124.3845.1 ID=prot_H-canaliculatus_F_contig15124.3845.1|Name=mRNA_H-canaliculatus_F_contig15124.3845.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=118bp
RNTPPYRCLYRTRDGVSVGRGKGAIRTRLQAFLASTLRCVAVARRSRGAN
GSDTRPSESRTRLHVSGGCGMKRGMTCGPRVAGEKRRSSKLFVLKRPSEF
LYLAWPSQMSTDCGAPP*
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mRNA from alignment at H-canaliculatus_F_contig15124:1797..2390-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15124.3845.1 ID=mRNA_H-canaliculatus_F_contig15124.3845.1|Name=mRNA_H-canaliculatus_F_contig15124.3845.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15124:1797..2390- (Hapterophycus canaliculatus Oshoro5f female)
AGAAACACACCGCCGTACCGCTGCTTGTACCGTACGAGAGACGGGGTATC
GGTGGGTCGGGGGAAAGGCGCCATCCGAACACGGCTTCAAGCGTTTCTCG
CAAGCACACTGCGTTGCGTTGCTGTCGCTCGTCGGTCACGGGGAGCGAAC
GGCAGCGATACGCGCCCGAGCGAGAGTCGCACACGTCTGCACGTCTCAGG
AGGTTGTGGCATGAAACGTGGAATGACTTGCGGGCCTCGGGTGGCGGGTG
AGAAAAGACGATCGCGTCATGATGTTGGACGTTGTACGAGAAGTAAATTA
TTCGTCTTGAAGCGCCCGTCGGAGTTCTTGTATCTCGCTTGGCCCTCTCA
AATGTCCACGGATTGTGGGGCACCCCCTTGAATAAACAACACGACTGCGG
TAGTAGACGCTGCACGCGCGGCGGAATGTGGCGAAAAAAAAGTAGCAACC
GACGCACAAGCGGGCAGGGTCTCCAGTTTGTTCCACCTTGGTGCTGCGCT
TTGTACTCTACACCTCTGGAACGGAAAGTCGGATGCAGAGCAGAGACAGC
CTCGGGGAAGAAGCAACAAAAGTCTCACCTCCCGACGAGCAGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15124:1797..2390-

>mRNA_H-canaliculatus_F_contig15124.3845.1 ID=mRNA_H-canaliculatus_F_contig15124.3845.1|Name=mRNA_H-canaliculatus_F_contig15124.3845.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15124:1797..2390- (Hapterophycus canaliculatus Oshoro5f female)
AGAAACACACCGCCGTACCGCTGCTTGTACCGTACGAGAGACGGGGTATC
GGTGGGTCGGGGGAAAGGCGCCATCCGAACACGGCTTCAAGCGTTTCTCG
CAAGCACACTGCGTTGCGTTGCTGTCGCTCGTCGGTCACGGGGAGCGAAC
GGCAGCGATACGCGCCCGAGCGAGAGTCGCACACGTCTGCACGTCTCAGG
AGGTTGTGGCATGAAACGTGGAATGACTTGCGGGCCTCGGGTGGCGGGTG
AGAAAAGACGATCAGAAACACACCGCCGTACCGCTGCTTGTACCGTACGA
GAGACGGGGTATCGGTGGGTCGGGGGAAAGGCGCCATCCGAACACGGCTT
CAAGCGTTTCTCGCAAGCACACTGCGTTGCGTTGCTGTCGCTCGTCGGTC
ACGGGGAGCGAACGGCAGCGATACGCGCCCGAGCGAGAGTCGCACACGTC
TGCACGTCTCAGGAGGTTGTGGCATGAAACGTGGAATGACTTGCGGGCCT
CGGGTGGCGGGTGAGAAAAGACGATCAAGTAAATTATTCGTCTTGAAGCG
CCCGTCGGAGTTCTTGTATCTCGCTTGGCCCTCTCAAATGTCCACGGATT
GTGGGGCACCCCCTTGAAAGTAAATTATTCGTCTTGAAGCGCCCGTCGGA
GTTCTTGTATCTCGCTTGGCCCTCTCAAATGTCCACGGATTGTGGGGCAC
CCCCTTGA
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