mRNA_H-canaliculatus_F_contig151.3830.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig151.3830.1
Unique NamemRNA_H-canaliculatus_F_contig151.3830.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig151.3830.1 vs. uniprot
Match: D7FSA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA4_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 4.140e-51
Identity = 85/98 (86.73%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:    1 RAISMVPAVSLFLGNLVCMCLSLVQSATNKQKARMKAMLTVDAACEALLLLYNMVLLLGGTSGLMPKEEFVSRILTNVLFMSLCFTFAKARWVADGAF 294
            RA+SMVPAV LFLGNLVCMCLSLV+SATNKQKARMK MLTVDA CE LLL+YNM+LLLGG SGL+PKEEFV RILTNV+FMSLC TFAKARWVADGAF
Sbjct:   87 RAMSMVPAVGLFLGNLVCMCLSLVESATNKQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFMSLCVTFAKARWVADGAF 184
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BLAST of mRNA_H-canaliculatus_F_contig151.3830.1 vs. uniprot
Match: A0A6H5JEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE0_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 7.860e-47
Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:    1 RAISMVPAVSLFLGNLVCMCLSLVQSATNKQKARMKAMLTVDAACEALLLLYNMVLLLGGTSGLMPKEEFVSRILTNVLFMSLCFTFAKARWVADGAF 294
            RA+S+VPAV LFLGNLVCMCLSLV+SATN+QKARMK ML+VDA CE LLL+YNM+LLLGG SGL+PKEEFV RILTNV+F+SLC TFAKARWVADGAF
Sbjct:  286 RAMSLVPAVGLFLGNLVCMCLSLVESATNRQKARMKTMLSVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFLSLCVTFAKARWVADGAF 383
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BLAST of mRNA_H-canaliculatus_F_contig151.3830.1 vs. uniprot
Match: A0A835ZG70_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG70_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.920e-13
Identity = 40/93 (43.01%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    1 RAISMVPAVSLFLGNLVCMCLSLVQSATNKQKARMKAMLTVDAACEALLLLYNMVLLLGGTSGLMPKEEFVSRILTNVLFMSLCFTFAKARWV 279
            RA+++ P+++L + N  C+ L  +  AT K K RMK +LT+++  EA+LL  N  LL+ G + + PK E+VS +L NV F+S+C  FAK  WV
Sbjct:  215 RALAIAPSLALLVANAACLALCCLSGATLKHKLRMKLVLTLNSLAEAVLLGVNTWLLVMGPARV-PKGEYVSSMLVNVWFLSICHNFAKMHWV 306
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BLAST of mRNA_H-canaliculatus_F_contig151.3830.1 vs. uniprot
Match: A0A7S4DDY4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDY4_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 3.760e-13
Identity = 41/96 (42.71%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 RAISMVPAVSLFLGNLVCMCLSLVQSATNKQKARMKAMLTVDAACEALLLLYNMVLLLGGTSGLMPKEEFVSRILTNVLFMSLCFTFAKARWVADG 288
            R + +VP V LFL N V  C+     A+  QK++MKA+L ++   E +LL+YN+V ++ G++   P+E +V R+L N  F++L F+FAKARW+ DG
Sbjct:  179 RILCVVPTVLLFLFN-VAGCIMCFFRAS--QKSKMKAILNMNGLSEMVLLVYNIVNMMKGSNMWTPREVYVGRVLVNFWFLTLWFSFAKARWITDG 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig151.3830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSA4_ECTSI4.140e-5186.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEE0_9PHAE7.860e-4782.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZG70_9STRA2.920e-1343.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DDY4_HETAK3.760e-1342.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig151contigH-canaliculatus_F_contig151:145..890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue1.2e-37
Seed eggNOG ortholog2880.D7FSA4
EggNOG OGs2E9MT@1,2SFZ0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004780.1
Exons2
Model size297
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig151.3830.1prot_H-canaliculatus_F_contig151.3830.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig151 157..890 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929251.0295033-UTR-H-canaliculatus_F_contig151:144..1561622929251.0295033-UTR-H-canaliculatus_F_contig151:144..156Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig151 145..156 +
1696845736.4541664-UTR-H-canaliculatus_F_contig151:144..1561696845736.4541664-UTR-H-canaliculatus_F_contig151:144..156Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig151 145..156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929251.0425565-CDS-H-canaliculatus_F_contig151:156..2821622929251.0425565-CDS-H-canaliculatus_F_contig151:156..282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig151 157..282 +
1696845736.4642284-CDS-H-canaliculatus_F_contig151:156..2821696845736.4642284-CDS-H-canaliculatus_F_contig151:156..282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig151 157..282 +
1622929251.0541677-CDS-H-canaliculatus_F_contig151:731..8901622929251.0541677-CDS-H-canaliculatus_F_contig151:731..890Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig151 732..890 +
1696845736.476893-CDS-H-canaliculatus_F_contig151:731..8901696845736.476893-CDS-H-canaliculatus_F_contig151:731..890Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig151 732..890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig151.3830.1

>prot_H-canaliculatus_F_contig151.3830.1 ID=prot_H-canaliculatus_F_contig151.3830.1|Name=mRNA_H-canaliculatus_F_contig151.3830.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
MVPAVSLFLGNLVCMCLSLVQSATNKQKARMKAMLTVDAACEALLLLYNM
VLLLGGTSGLMPKEEFVSRILTNVLFMSLCFTFAKARWVADGAF*
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mRNA from alignment at H-canaliculatus_F_contig151:145..890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig151.3830.1 ID=mRNA_H-canaliculatus_F_contig151.3830.1|Name=mRNA_H-canaliculatus_F_contig151.3830.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=746bp|location=Sequence derived from alignment at H-canaliculatus_F_contig151:145..890+ (Hapterophycus canaliculatus Oshoro5f female)
AGGGCAATATCGATGGTACCGGCAGTGAGCCTCTTCTTGGGCAACCTGGT
GTGCATGTGCCTCTCGCTCGTGCAGTCCGCGACCAACAAGCAGAAGGCCA
GGATGAAGGCCATGCTCACCGTTGACGCCGCGTGCGAGGTATCTGCAAGC
ACGCCGTTTCCGTCTCGTTGCGACCAGGCCGCAAACGCAGCACCTTGTCA
TGTGGTGCAAAAAAACGAAGTACGCTAGTGCAAGCAGCAAACGAAGCATG
TTGAGCGTTGGCGGTGCGCGTTTCGCTCTCTCCCCTTTTCGCGGTTACAG
TCTGTGTGCCCCCCCGTAGTGTCAAAAACACGGCGATGGATCCTGCGCGA
GTTTGGGATTGGGGTCGCTCCTTCCCCCCCTCAGCAGAACGCAGGTGAGG
CAGTCAAGCTTTCGGTGCGGGAGAAAGCCGAGGCGCAGGTCCCCCACCCG
CCTGACGCAACACAGCACGACCGCTCGGGAAAAAGAAAATGTGACAGAAC
AGCTGTCGTTGATTTGTGTCTTTGATGACCTCACGCCCCTTCCTTTCCAC
CCGTGTCTGCCGCCCCGCCCCTGCGCCTTTTTTGCAGGCCTTGCTGCTGC
TGTACAATATGGTGCTGCTCCTGGGGGGCACGTCGGGGCTGATGCCGAAG
GAAGAGTTCGTAAGCCGTATCCTCACGAACGTCCTCTTCATGTCCCTCTG
CTTCACGTTCGCCAAGGCGCGATGGGTGGCGGACGGTGCTTTCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig151:145..890+

>mRNA_H-canaliculatus_F_contig151.3830.1 ID=mRNA_H-canaliculatus_F_contig151.3830.1|Name=mRNA_H-canaliculatus_F_contig151.3830.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig151:145..890+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTACCGGCAGTGAGCCTCTTCTTGGGCAACCTGGTGTGCATGTGCCT
CTCGCTCGTGCAGTCCGCGACCAACAAGCAGAAGGCCAGGATGAAGGCCA
TGCTCACCGTTGACGCCGCGTGCGAGATGGTACCGGCAGTGAGCCTCTTC
TTGGGCAACCTGGTGTGCATGTGCCTCTCGCTCGTGCAGTCCGCGACCAA
CAAGCAGAAGGCCAGGATGAAGGCCATGCTCACCGTTGACGCCGCGTGCG
AGGCCTTGCTGCTGCTGTACAATATGGTGCTGCTCCTGGGGGGCACGTCG
GGGCTGATGCCGAAGGAAGAGTTCGTAAGCCGTATCCTCACGAACGTCCT
CTTCATGTCCCTCTGCTTCACGTTCGCCAAGGCGCGATGGGTGGCGGACG
GTGCTTTCTGAGCCTTGCTGCTGCTGTACAATATGGTGCTGCTCCTGGGG
GGCACGTCGGGGCTGATGCCGAAGGAAGAGTTCGTAAGCCGTATCCTCAC
GAACGTCCTCTTCATGTCCCTCTGCTTCACGTTCGCCAAGGCGCGATGGG
TGGCGGACGGTGCTTTCTGA
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