mRNA_H-canaliculatus_F_contig15078.3819.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15078.3819.1
Unique NamemRNA_H-canaliculatus_F_contig15078.3819.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15078.3819.1 vs. uniprot
Match: D8LAZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ1_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.550e-10
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:   28 WDFGKFFVVKESLALMYKELQLPSEALLKYQ 120
            WDFG+FFVVKESLALMYKELQLPSEALLKYQ
Sbjct:  397 WDFGQFFVVKESLALMYKELQLPSEALLKYQ 427
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15078.3819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAZ1_ECTSI1.550e-1096.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15078contigH-canaliculatus_F_contig15078:908..1027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog2880.D8LAZ1
KEGG koko:K20307,ko:K20476
EggNOG free text desc.early endosome to Golgi transport
EggNOG OGsKOG1931@1,KOG1931@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.674922-CDS-H-canaliculatus_F_contig15078:907..10271622929249.674922-CDS-H-canaliculatus_F_contig15078:907..1027Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15078 908..1027 -
1696845735.7409189-CDS-H-canaliculatus_F_contig15078:907..10271696845735.7409189-CDS-H-canaliculatus_F_contig15078:907..1027Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15078 908..1027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15078.3819.1prot_H-canaliculatus_F_contig15078.3819.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15078 908..1027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15078.3819.1

>prot_H-canaliculatus_F_contig15078.3819.1 ID=prot_H-canaliculatus_F_contig15078.3819.1|Name=mRNA_H-canaliculatus_F_contig15078.3819.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=40bp
PSDLAPSRRWDFGKFFVVKESLALMYKELQLPSEALLKYQ
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mRNA from alignment at H-canaliculatus_F_contig15078:908..1027-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15078.3819.1 ID=mRNA_H-canaliculatus_F_contig15078.3819.1|Name=mRNA_H-canaliculatus_F_contig15078.3819.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=120bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15078:908..1027- (Hapterophycus canaliculatus Oshoro5f female)
CCGTCCGACCTCGCCCCTTCGCGCAGATGGGACTTCGGAAAGTTCTTCGT
GGTGAAGGAGTCGTTGGCGCTCATGTACAAGGAGCTGCAGCTGCCCTCGG
AGGCGCTCCTCAAGTACCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15078:908..1027-

>mRNA_H-canaliculatus_F_contig15078.3819.1 ID=mRNA_H-canaliculatus_F_contig15078.3819.1|Name=mRNA_H-canaliculatus_F_contig15078.3819.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=240bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15078:908..1027- (Hapterophycus canaliculatus Oshoro5f female)
CCGTCCGACCTCGCCCCTTCGCGCAGATGGGACTTCGGAAAGTTCTTCGT
GGTGAAGGAGTCGTTGGCGCTCATGTACAAGGAGCTGCAGCTGCCCTCGG
AGGCGCTCCTCAAGTACCAGCCGTCCGACCTCGCCCCTTCGCGCAGATGG
GACTTCGGAAAGTTCTTCGTGGTGAAGGAGTCGTTGGCGCTCATGTACAA
GGAGCTGCAGCTGCCCTCGGAGGCGCTCCTCAAGTACCAG
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