mRNA_H-canaliculatus_F_contig15073.3817.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15073.3817.1
Unique NamemRNA_H-canaliculatus_F_contig15073.3817.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15073.3817.1 vs. uniprot
Match: D8LLC1_ECTSI (MEKK and related serine/threonine protein kinases amardillo repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLC1_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.780e-35
Identity = 102/175 (58.29%), Postives = 120/175 (68.57%), Query Frame = 2 
Query:    2 IGMEATVLRRFMEAEEEDEEDAFADIDDVVLVAPADRPSLGTEAAKKGDPASLAKPASFAESLKARMLNHQGSSMT-TTGLSAAAGGRAGADEDGGGLDDFDDLFGAGFEDLSDGEDGGTGEEAERELHAKVGQEVFAELSRLEARGSAA-SPATLLRAKTAGDSGSGSGGRLSV 520
            IGMEATVLRRFME EEE EEDAF DID   +  P D P L T A  +G+    ++PASFA++LKA+ML+HQG S    +G+S AA   A      G  DDFDDLFG GFEDLSDGE+G  G+EAERE+HAKVGQEVFAELSRLE RGS A + +  LR+      G G GG  +V
Sbjct:  520 IGMEATVLRRFMEDEEE-EEDAFGDID---IDVPGDGPLLPT-AMGEGE---RSRPASFADNLKAKMLSHQGGSAAPASGVSQAATDEASGSA-AGAFDDFDDLFGTGFEDLSDGEEGSNGKEAEREMHAKVGQEVFAELSRLETRGSVAGNNSGNLRSGDGQQKGRGGGGTAAV 685
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BLAST of mRNA_H-canaliculatus_F_contig15073.3817.1 vs. uniprot
Match: A0A6H5JZS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZS1_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.700e-19
Identity = 81/175 (46.29%), Postives = 95/175 (54.29%), Query Frame = 2 
Query:    2 IGMEATVLRRFMEAEEEDEEDAFADIDDVVLVAPADRPSLGTEAAKKGDPASLAKPASFAESLKARMLNHQGSSMTT-TGLSAAAGGRAGADEDGGGLDDFDDLFGAGFEDLSDGEDGGTGEEAERELHAKVGQEVFAELSRLEARGSAASPATL-LRAKTAGDSGSGSGGRLSV 520
            IGMEATVLRRFME EEE EEDAF D+D   +  P D P L T+                   LKA+ML+HQG S    +G+   A   A A                     SDGE+GG G+EAERE+HAKVGQEVFAELSRLE RGSAA   ++ LR +     G G GG  +V
Sbjct:  196 IGMEATVLRRFMEDEEE-EEDAFGDVD---IDVPGDGPLLPTD------------------KLKAKMLSHQGGSAAPPSGVGQGATDEA-AXXXXXXXXXXXXXXXXXXXXXSDGEEGGNGKEAEREMHAKVGQEVFAELSRLETRGSAAGNNSVNLRCRDGQQKGRGGGGTAAV 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15073.3817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLC1_ECTSI1.780e-3558.29MEKK and related serine/threonine protein kinases ... [more]
A0A6H5JZS1_9PHAE3.700e-1946.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15073contigH-canaliculatus_F_contig15073:535..2292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size607
Cds size606
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15073.3817.1prot_H-canaliculatus_F_contig15073.3817.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15073 535..2292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.5250509-CDS-H-canaliculatus_F_contig15073:534..6621622929249.5250509-CDS-H-canaliculatus_F_contig15073:534..662Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15073 535..662 +
1696845735.6663723-CDS-H-canaliculatus_F_contig15073:534..6621696845735.6663723-CDS-H-canaliculatus_F_contig15073:534..662Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15073 535..662 +
1622929249.5381172-CDS-H-canaliculatus_F_contig15073:1064..11501622929249.5381172-CDS-H-canaliculatus_F_contig15073:1064..1150Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15073 1065..1150 +
1696845735.676281-CDS-H-canaliculatus_F_contig15073:1064..11501696845735.676281-CDS-H-canaliculatus_F_contig15073:1064..1150Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15073 1065..1150 +
1622929249.549352-CDS-H-canaliculatus_F_contig15073:1517..16941622929249.549352-CDS-H-canaliculatus_F_contig15073:1517..1694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15073 1518..1694 +
1696845735.689346-CDS-H-canaliculatus_F_contig15073:1517..16941696845735.689346-CDS-H-canaliculatus_F_contig15073:1517..1694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15073 1518..1694 +
1622929249.561107-CDS-H-canaliculatus_F_contig15073:2077..22921622929249.561107-CDS-H-canaliculatus_F_contig15073:2077..2292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15073 2078..2292 +
1696845735.6996195-CDS-H-canaliculatus_F_contig15073:2077..22921696845735.6996195-CDS-H-canaliculatus_F_contig15073:2077..2292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15073 2078..2292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15073.3817.1

>prot_H-canaliculatus_F_contig15073.3817.1 ID=prot_H-canaliculatus_F_contig15073.3817.1|Name=mRNA_H-canaliculatus_F_contig15073.3817.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
DRHGSHGPPALHGGGGGGRRGRVRRHRRRRPRRARGQAFAWDGSGEEGRS
RIPGEARLLRGEPEGQDAQPPGQLDDHDRAVGGGRGPGGSRRRRRRPGRL
RRPVRGGFRGSVRRGGWGHRRGGGARTARQGGTRGVRGALTARGQGLRGI
AGHPAASQDGGGQRQRQRGTVVRGQERGDARQRQRPWREREADGGVGSRR
GV
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mRNA from alignment at H-canaliculatus_F_contig15073:535..2292+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15073.3817.1 ID=mRNA_H-canaliculatus_F_contig15073.3817.1|Name=mRNA_H-canaliculatus_F_contig15073.3817.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1758bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15073:535..2292+ (Hapterophycus canaliculatus Oshoro5f female)
GATCGGCATGGAAGCCACGGTCCTCCGGCGCTTCATGGAGGCGGAGGAGG
AGGACGAAGAGGACGCGTTCGCCGACATCGACGACGTCGTCCTCGTCGCG
CCCGCGGACAGGCCTTCGCTTGGGACGGGTGAGCTTGGGTGATGGAAAGC
CGGCGGCTGGTGCGCATGATGTTGTTGCTGTTGTCGTCGTGCGTCGGTGA
AAGACGCCGAGACTCATCTCGAGCGCCTTACCACGTGGTCCACCCGTCGA
CCGCGACGGCTTTCCGTCTCGAACGGGCGCGGATGCTCGAACACCGCCCT
CTGGCCGCCTGCCACAGCTCACCCGCGATACCAGGCTCCGCTTGTGCATC
CTGCCCTCTAGGCGCAGCGCGGACGACTCGACTCCCCTTCACCTCCCAGA
CTTCTGCGCGAAAGTGGCCCGCCGAACTCCGCCACCGGGCGTCCCGTCCC
CCTTCCTCGTACGCATTTACTTCGTAGTAGATAAACACCCTTTTGTCTTC
GCTCGTTCACGACGTGACCGGTCCTAGCAGAAGCGGCGAAGAAGGGCGAT
CCCGCATCCCTGGCGAAGCCCGCCTCCTTCGCGGAGAGCCTGAAGGCCAG
GATGCTCAACCACCAGGTGTGTGGTGTGTTCGGCGAGCGGATCGTGCCCC
ATATCATACGTTTTTCTTCTTTGTTTCTCCTTTTTGTCTCCTTTTTTTCT
TCTTCTTTTTGGTGGCGGGTGCACCCAGAAAGGATTCCTAAGGTTGTGTC
TCCAACGCAGGCCGAAGACAGGGGGTGCCAATCGAAACGGGCTTTCGATT
TAAGTCTGTCGCTCTTGTGAGTGTTTCTCTTTCGAAGGAAAGGGAGAAGA
AAATGAAGAAAAAGAAGGAAGGGATGAAAAAGAAGGAAACAGAAGGGCGT
GAACGGTGCCGAGCTTACAAACGTCTTCCCGGTTGTTGTTCGTTTTTTTT
TGTGTGAAATCCAATCCGATCGAAACAAAGCAGGGCAGCTCGATGACCAC
GACAGGGCTGTCGGCGGCGGCAGGGGGCCGGGCGGGAGCAGACGAAGACG
GAGGCGGCCTGGACGACTTCGACGACCTGTTCGGGGCGGGTTTCGAGGAT
CTGTCCGACGGGGAGGATGGGGGCACCGGAGAGGAGGCGGAGCGAGAACT
GCACGCCAAGGTTCGTGTGTTTCCTTGGACACGTTTGTGTTGTGCACCCA
CACTTTTTTTCTCTATGCGCGTTCGTGTTGTGAGTACACTTACTGTGCCT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAACCTACGCCGTCGGGGC
CCACACGAAGCCACGCGCGCGTGTCAAGGCTGCGCGTGTTCACCGAAGCG
GGTCGTGTCGGGATGGAAAAATCGTGCGCAGGAGCGCCATCGCACCCCAC
CCCCCCACCCACCTCGGGCTCGCCCACTGCCCCGCGCGACACGTCCTCCT
CCGCGCCTTGCCCCACGCCGCACTCTCTGCTCGCCCTTACCGGCCGGCGC
CGCTCGCGCCGCTCGCGCCGCTCGCGCCGCTTCGTGGACCCAGGTGGGAC
AAGAGGTGTTCGCGGAGCTCTCACGGCTCGAGGCCAGGGGCTCCGCGGCA
TCGCCGGCCACCCTGCTGCGAGCCAAGACGGCGGGGGACAGCGGCAGCGG
CAGCGGGGGACGGTTGTCCGTGGGCAGGAGAGAGGCGACGCCCGTCAGCG
ACAGAGGCCCTGGCGGGAACGGGAAGCGGACGGCGGGGTCGGCTCTCGCC
GAGGTGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15073:535..2292+

>mRNA_H-canaliculatus_F_contig15073.3817.1 ID=mRNA_H-canaliculatus_F_contig15073.3817.1|Name=mRNA_H-canaliculatus_F_contig15073.3817.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15073:535..2292+ (Hapterophycus canaliculatus Oshoro5f female)
GATCGGCATGGAAGCCACGGTCCTCCGGCGCTTCATGGAGGCGGAGGAGG
AGGACGAAGAGGACGCGTTCGCCGACATCGACGACGTCGTCCTCGTCGCG
CCCGCGGACAGGCCTTCGCTTGGGACGGGATCGGCATGGAAGCCACGGTC
CTCCGGCGCTTCATGGAGGCGGAGGAGGAGGACGAAGAGGACGCGTTCGC
CGACATCGACGACGTCGTCCTCGTCGCGCCCGCGGACAGGCCTTCGCTTG
GGACGGAAGCGGCGAAGAAGGGCGATCCCGCATCCCTGGCGAAGCCCGCC
TCCTTCGCGGAGAGCCTGAAGGCCAGGATGCTCAACCACCAGAAGCGGCG
AAGAAGGGCGATCCCGCATCCCTGGCGAAGCCCGCCTCCTTCGCGGAGAG
CCTGAAGGCCAGGATGCTCAACCACCAGGGCAGCTCGATGACCACGACAG
GGCTGTCGGCGGCGGCAGGGGGCCGGGCGGGAGCAGACGAAGACGGAGGC
GGCCTGGACGACTTCGACGACCTGTTCGGGGCGGGTTTCGAGGATCTGTC
CGACGGGGAGGATGGGGGCACCGGAGAGGAGGCGGAGCGAGAACTGCACG
CCAAGGGCAGCTCGATGACCACGACAGGGCTGTCGGCGGCGGCAGGGGGC
CGGGCGGGAGCAGACGAAGACGGAGGCGGCCTGGACGACTTCGACGACCT
GTTCGGGGCGGGTTTCGAGGATCTGTCCGACGGGGAGGATGGGGGCACCG
GAGAGGAGGCGGAGCGAGAACTGCACGCCAAGGTGGGACAAGAGGTGTTC
GCGGAGCTCTCACGGCTCGAGGCCAGGGGCTCCGCGGCATCGCCGGCCAC
CCTGCTGCGAGCCAAGACGGCGGGGGACAGCGGCAGCGGCAGCGGGGGAC
GGTTGTCCGTGGGCAGGAGAGAGGCGACGCCCGTCAGCGACAGAGGCCCT
GGCGGGAACGGGAAGCGGACGGCGGGGTCGGCTCTCGCCGAGGTGTCGTG
GGACAAGAGGTGTTCGCGGAGCTCTCACGGCTCGAGGCCAGGGGCTCCGC
GGCATCGCCGGCCACCCTGCTGCGAGCCAAGACGGCGGGGGACAGCGGCA
GCGGCAGCGGGGGACGGTTGTCCGTGGGCAGGAGAGAGGCGACGCCCGTC
AGCGACAGAGGCCCTGGCGGGAACGGGAAGCGGACGGCGGGGTCGGCTCT
CGCCGAGGTGTC
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