mRNA_H-canaliculatus_F_contig15068.3812.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15068.3812.1
Unique NamemRNA_H-canaliculatus_F_contig15068.3812.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15068.3812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15068contigH-canaliculatus_F_contig15068:2069..2434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size296
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.004573-CDS-H-canaliculatus_F_contig15068:2068..22521622929249.004573-CDS-H-canaliculatus_F_contig15068:2068..2252Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15068 2069..2252 +
1696845735.3793054-CDS-H-canaliculatus_F_contig15068:2068..22521696845735.3793054-CDS-H-canaliculatus_F_contig15068:2068..2252Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15068 2069..2252 +
1622929249.023322-CDS-H-canaliculatus_F_contig15068:2322..24321622929249.023322-CDS-H-canaliculatus_F_contig15068:2322..2432Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15068 2323..2432 +
1696845735.3886185-CDS-H-canaliculatus_F_contig15068:2322..24321696845735.3886185-CDS-H-canaliculatus_F_contig15068:2322..2432Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15068 2323..2432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15068.3812.1prot_H-canaliculatus_F_contig15068.3812.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15068 2069..2432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15068.3812.1

>prot_H-canaliculatus_F_contig15068.3812.1 ID=prot_H-canaliculatus_F_contig15068.3812.1|Name=mRNA_H-canaliculatus_F_contig15068.3812.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
SRDLSAERWSRRRCRCRSPGLRAQGTGRAAPQSPRRTPRVRQATRRHLGR
FSRLPPPAAEMGAFRYCCSACVTEGLPGGHQRQRWRDPGRRGVSRSSA
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mRNA from alignment at H-canaliculatus_F_contig15068:2069..2434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15068.3812.1 ID=mRNA_H-canaliculatus_F_contig15068.3812.1|Name=mRNA_H-canaliculatus_F_contig15068.3812.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15068:2069..2434+ (Hapterophycus canaliculatus Oshoro5f female)
AGTCGAGACCTGTCGGCGGAGCGGTGGAGCCGAAGAAGGTGTCGGTGTCG
ATCGCCGGGGTTGCGCGCACAGGGAACGGGTCGGGCGGCGCCGCAGTCGC
CGAGGCGGACGCCACGGGTGAGGCAGGCAACTCGGCGACACCTTGGCCGC
TTCTCTCGGCTGCCGCCCCCGGCAGCGGAGATGGGTTGCTGTGCAAGGCG
ACGCCGCTGGTGTCGTTGCTCACGTTCCCGGCCGTCATTGCCGGCTGTGC
GGAGGCGCCTTCCGGTACTGCTGCTCCGCTTGCGTCACCGAGGGTCTCCC
AGGCGGCCACCAACGGCAGCGGTGGAGGGACCCCGGGCGACGCGGTGTGT
CCCGCTCCTCCGCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15068:2069..2434+

>mRNA_H-canaliculatus_F_contig15068.3812.1 ID=mRNA_H-canaliculatus_F_contig15068.3812.1|Name=mRNA_H-canaliculatus_F_contig15068.3812.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15068:2069..2434+ (Hapterophycus canaliculatus Oshoro5f female)
AGTCGAGACCTGTCGGCGGAGCGGTGGAGCCGAAGAAGGTGTCGGTGTCG
ATCGCCGGGGTTGCGCGCACAGGGAACGGGTCGGGCGGCGCCGCAGTCGC
CGAGGCGGACGCCACGGGTGAGGCAGGCAACTCGGCGACACCTTGGCCGC
TTCTCTCGGCTGCCGCCCCCGGCAGCGGAGATGGAGTCGAGACCTGTCGG
CGGAGCGGTGGAGCCGAAGAAGGTGTCGGTGTCGATCGCCGGGGTTGCGC
GCACAGGGAACGGGTCGGGCGGCGCCGCAGTCGCCGAGGCGGACGCCACG
GGTGAGGCAGGCAACTCGGCGACACCTTGGCCGCTTCTCTCGGCTGCCGC
CCCCGGCAGCGGAGATGGGCGCCTTCCGGTACTGCTGCTCCGCTTGCGTC
ACCGAGGGTCTCCCAGGCGGCCACCAACGGCAGCGGTGGAGGGACCCCGG
GCGACGCGGTGTGTCCCGCTCCTCCGCGGCGCCTTCCGGTACTGCTGCTC
CGCTTGCGTCACCGAGGGTCTCCCAGGCGGCCACCAACGGCAGCGGTGGA
GGGACCCCGGGCGACGCGGTGTGTCCCGCTCCTCCGCG
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