mRNA_H-canaliculatus_F_contig15047.3795.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15047.3795.1
Unique NamemRNA_H-canaliculatus_F_contig15047.3795.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15047.3795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15047contigH-canaliculatus_F_contig15047:1635..2358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size724
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15047.3795.1prot_H-canaliculatus_F_contig15047.3795.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15047 1694..2116 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929247.0248249-UTR-H-canaliculatus_F_contig15047:1634..16931622929247.0248249-UTR-H-canaliculatus_F_contig15047:1634..1693Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15047 1635..1693 +
1696845734.6961658-UTR-H-canaliculatus_F_contig15047:1634..16931696845734.6961658-UTR-H-canaliculatus_F_contig15047:1634..1693Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15047 1635..1693 +
1622929247.0542746-UTR-H-canaliculatus_F_contig15047:2116..23581622929247.0542746-UTR-H-canaliculatus_F_contig15047:2116..2358Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15047 2117..2358 +
1696845734.7148361-UTR-H-canaliculatus_F_contig15047:2116..23581696845734.7148361-UTR-H-canaliculatus_F_contig15047:2116..2358Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15047 2117..2358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929247.0401196-CDS-H-canaliculatus_F_contig15047:1693..21161622929247.0401196-CDS-H-canaliculatus_F_contig15047:1693..2116Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15047 1694..2116 +
1696845734.7054021-CDS-H-canaliculatus_F_contig15047:1693..21161696845734.7054021-CDS-H-canaliculatus_F_contig15047:1693..2116Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15047 1694..2116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15047.3795.1

>prot_H-canaliculatus_F_contig15047.3795.1 ID=prot_H-canaliculatus_F_contig15047.3795.1|Name=mRNA_H-canaliculatus_F_contig15047.3795.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=141bp
MCSRLLAPSLSTRGDGFRSSCNTWRNALHREGLCGCALLISGSRCVVSAT
KARVFGSGSARSMLNGGCTQTPSSCFLRRVSRFTVSSPWRRNPACRKRTL
TYPGNLFVPCHSRLSGCRWRSHKMGRSSPYDTRPIFETLT*
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mRNA from alignment at H-canaliculatus_F_contig15047:1635..2358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15047.3795.1 ID=mRNA_H-canaliculatus_F_contig15047.3795.1|Name=mRNA_H-canaliculatus_F_contig15047.3795.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=724bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15047:1635..2358+ (Hapterophycus canaliculatus Oshoro5f female)
CACAGACAAGAAATAGATCGCCCGGACGTGGTGTTCTGTGAGAGGCTTTT
CTGCGCACCATGTGTAGCCGTCTGCTCGCTCCGAGTCTGTCGACTCGAGG
CGATGGCTTCCGTTCTTCTTGCAACACCTGGAGGAATGCGCTTCATCGCG
AAGGGCTGTGCGGGTGCGCCCTCCTTATTTCTGGCTCACGTTGCGTAGTC
TCCGCGACAAAAGCGCGCGTGTTTGGGAGTGGCTCCGCTCGTTCAATGCT
GAACGGGGGTTGTACACAGACGCCATCTTCGTGTTTTTTGCGACGGGTCT
CTCGGTTTACAGTGAGTTCCCCGTGGCGGCGCAACCCGGCTTGTCGAAAA
CGCACGCTCACTTATCCTGGCAATCTTTTTGTGCCATGTCACTCTCGGTT
GTCGGGGTGTCGCTGGAGATCGCACAAGATGGGCCGCAGCAGCCCCTACG
ACACGAGACCCATCTTCGAAACTCTGACTTAGCGACACGAGAGATGCTAC
GTGCCAACGTTCCGTCGACGAGACGCCTCTCCCACCAAGACGTTGCCTGC
GGCTCTCTTTCCCGCACGCGTGACCCTCACGCTGCGGATGGGTCGAATTC
TATGGAAATGGCGTGGGTGCGCGGCAGGTCGGGCGATCCACGGTGTGCTT
TTACATCTTCAGCCCAAGCGTACGTTTTTTTCCAAGCAACCGCTGCGAGT
GTGTTACTTTTACCGAAGATGCGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15047:1635..2358+

>mRNA_H-canaliculatus_F_contig15047.3795.1 ID=mRNA_H-canaliculatus_F_contig15047.3795.1|Name=mRNA_H-canaliculatus_F_contig15047.3795.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=846bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15047:1635..2358+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGTAGCCGTCTGCTCGCTCCGAGTCTGTCGACTCGAGGCGATGGCTT
CCGTTCTTCTTGCAACACCTGGAGGAATGCGCTTCATCGCGAAGGGCTGT
GCGGGTGCGCCCTCCTTATTTCTGGCTCACGTTGCGTAGTCTCCGCGACA
AAAGCGCGCGTGTTTGGGAGTGGCTCCGCTCGTTCAATGCTGAACGGGGG
TTGTACACAGACGCCATCTTCGTGTTTTTTGCGACGGGTCTCTCGGTTTA
CAGTGAGTTCCCCGTGGCGGCGCAACCCGGCTTGTCGAAAACGCACGCTC
ACTTATCCTGGCAATCTTTTTGTGCCATGTCACTCTCGGTTGTCGGGGTG
TCGCTGGAGATCGCACAAGATGGGCCGCAGCAGCCCCTACGACACGAGAC
CCATCTTCGAAACTCTGACTTAGATGTGTAGCCGTCTGCTCGCTCCGAGT
CTGTCGACTCGAGGCGATGGCTTCCGTTCTTCTTGCAACACCTGGAGGAA
TGCGCTTCATCGCGAAGGGCTGTGCGGGTGCGCCCTCCTTATTTCTGGCT
CACGTTGCGTAGTCTCCGCGACAAAAGCGCGCGTGTTTGGGAGTGGCTCC
GCTCGTTCAATGCTGAACGGGGGTTGTACACAGACGCCATCTTCGTGTTT
TTTGCGACGGGTCTCTCGGTTTACAGTGAGTTCCCCGTGGCGGCGCAACC
CGGCTTGTCGAAAACGCACGCTCACTTATCCTGGCAATCTTTTTGTGCCA
TGTCACTCTCGGTTGTCGGGGTGTCGCTGGAGATCGCACAAGATGGGCCG
CAGCAGCCCCTACGACACGAGACCCATCTTCGAAACTCTGACTTAG
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