mRNA_H-canaliculatus_F_contig1504.3788.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1504.3788.1
Unique NamemRNA_H-canaliculatus_F_contig1504.3788.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1504.3788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1504contigH-canaliculatus_F_contig1504:496..929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size419
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1504.3788.1prot_H-canaliculatus_F_contig1504.3788.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1504 693..929 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929246.3223422-UTR-H-canaliculatus_F_contig1504:495..6921622929246.3223422-UTR-H-canaliculatus_F_contig1504:495..692Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1504 496..692 -
1696845734.2929878-UTR-H-canaliculatus_F_contig1504:495..6921696845734.2929878-UTR-H-canaliculatus_F_contig1504:495..692Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1504 496..692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929246.3350427-CDS-H-canaliculatus_F_contig1504:692..7231622929246.3350427-CDS-H-canaliculatus_F_contig1504:692..723Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1504 693..723 -
1696845734.3034651-CDS-H-canaliculatus_F_contig1504:692..7231696845734.3034651-CDS-H-canaliculatus_F_contig1504:692..723Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1504 693..723 -
1622929246.3520377-CDS-H-canaliculatus_F_contig1504:738..9291622929246.3520377-CDS-H-canaliculatus_F_contig1504:738..929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1504 739..929 -
1696845734.3137584-CDS-H-canaliculatus_F_contig1504:738..9291696845734.3137584-CDS-H-canaliculatus_F_contig1504:738..929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1504 739..929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1504.3788.1

>prot_H-canaliculatus_F_contig1504.3788.1 ID=prot_H-canaliculatus_F_contig1504.3788.1|Name=mRNA_H-canaliculatus_F_contig1504.3788.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=74bp
VSLQPELSPVGPSSIELGLRRGERSCDAWCGGSTVMSDQTSCPSTVELPD
VHALFVASKRICLQRFSRFAPQP*
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mRNA from alignment at H-canaliculatus_F_contig1504:496..929-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1504.3788.1 ID=mRNA_H-canaliculatus_F_contig1504.3788.1|Name=mRNA_H-canaliculatus_F_contig1504.3788.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=434bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1504:496..929- (Hapterophycus canaliculatus Oshoro5f female)
GTCAGTTTGCAACCCGAGCTGTCCCCTGTAGGCCCTTCCTCAATCGAGCT
TGGTCTGCGAAGAGGTGAGAGAAGTTGCGACGCTTGGTGTGGTGGAAGTA
CGGTGATGTCTGACCAAACCAGCTGCCCCTCGACGGTCGAACTGCCGGAT
GTACATGCTCTTTTTGTCGCCTCAAAACGAATTTGTCTACAGCAGTAGCC
TACAAGGCGGTTTTCCCGTTTCGCGCCACAACCCTGAGGAGTCGTGCGCT
CTGACAGAAGCAGACCAAGAAGAGGGGCTGTGACCAGCAAGAGGGGGTAA
GTTCCAATTTGTGGCCATGATATTGAGGATTGAGGGTCAGGATCTCAGTC
ATATCGAAACCGCTTGAAGGTCCGCTGTCTGCAGCTCGGGGGCTTGGTTT
TCCATTCCTCCGCTCTATTGACCAAAAATGTCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1504:496..929-

>mRNA_H-canaliculatus_F_contig1504.3788.1 ID=mRNA_H-canaliculatus_F_contig1504.3788.1|Name=mRNA_H-canaliculatus_F_contig1504.3788.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1504:496..929- (Hapterophycus canaliculatus Oshoro5f female)
GTCAGTTTGCAACCCGAGCTGTCCCCTGTAGGCCCTTCCTCAATCGAGCT
TGGTCTGCGAAGAGGTGAGAGAAGTTGCGACGCTTGGTGTGGTGGAAGTA
CGGTGATGTCTGACCAAACCAGCTGCCCCTCGACGGTCGAACTGCCGGAT
GTACATGCTCTTTTTGTCGCCTCAAAACGAATTTGTCTACAGTCAGTTTG
CAACCCGAGCTGTCCCCTGTAGGCCCTTCCTCAATCGAGCTTGGTCTGCG
AAGAGGTGAGAGAAGTTGCGACGCTTGGTGTGGTGGAAGTACGGTGATGT
CTGACCAAACCAGCTGCCCCTCGACGGTCGAACTGCCGGATGTACATGCT
CTTTTTGTCGCCTCAAAACGAATTTGTCTACAGCGGTTTTCCCGTTTCGC
GCCACAACCCTGAGCGGTTTTCCCGTTTCGCGCCACAACCCTGA
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