mRNA_H-canaliculatus_F_contig1503.3784.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1503.3784.1
Unique NamemRNA_H-canaliculatus_F_contig1503.3784.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1503.3784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1503contigH-canaliculatus_F_contig1503:23242..24123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-26_004940.1
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929246.007315-CDS-H-canaliculatus_F_contig1503:23241..234781622929246.007315-CDS-H-canaliculatus_F_contig1503:23241..23478Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1503 23242..23478 -
1696845734.1364348-CDS-H-canaliculatus_F_contig1503:23241..234781696845734.1364348-CDS-H-canaliculatus_F_contig1503:23241..23478Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1503 23242..23478 -
1622929246.0304227-CDS-H-canaliculatus_F_contig1503:24081..241231622929246.0304227-CDS-H-canaliculatus_F_contig1503:24081..24123Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1503 24082..24123 -
1696845734.1456482-CDS-H-canaliculatus_F_contig1503:24081..241231696845734.1456482-CDS-H-canaliculatus_F_contig1503:24081..24123Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1503 24082..24123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1503.3784.1prot_H-canaliculatus_F_contig1503.3784.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1503 23242..24123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1503.3784.1

>prot_H-canaliculatus_F_contig1503.3784.1 ID=prot_H-canaliculatus_F_contig1503.3784.1|Name=mRNA_H-canaliculatus_F_contig1503.3784.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
ESQQLIRNFPGIMQDPSIWTSPSAEELKIVGDLEPIPSQPLDPYTAARYG
EGMGQAAWPLDGGGYRTAAPTRGMELTNELDASISSSAGITEA
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mRNA from alignment at H-canaliculatus_F_contig1503:23242..24123-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1503.3784.1 ID=mRNA_H-canaliculatus_F_contig1503.3784.1|Name=mRNA_H-canaliculatus_F_contig1503.3784.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=882bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1503:23242..24123- (Hapterophycus canaliculatus Oshoro5f female)
GAGAGCCAACAGCTTATAAGAAACTTTCCGGGTATAATGCAGGCAAGAGA
GTGAAGAAGAGAAGGAAACGTGGGGGACAGACAGACAGGCAGGCAGAAAG
ATAGATAGAAAAGAGAAAGATGGAGAAGAGGGCGCGTGAGGAAGGTGCAG
GGAGAGAGGGAAACAGAGCGGCGGTGGTGACACGTGTGAACGAAAGCGGG
GGACCGGCACGTGTAGATCATGGTGGTTGCCTTTCTGGGGACTGCGCAGG
ATCGAAAAGCGTCGATCTCCACACGTGATGCCCAAGTTGACGAAATGGGC
CTCACCCCTAACCCCCGCGACCATTTTCTGATACGCCTCCCATTGCTCTC
CAATTTTTTGGAAGAGGCATGGCCACGCTGCGAGATCCATGTTGACCACA
AACAATATATGGAACAAGAAGAAGAAAGCCGCGCAATCCTTGTGGGTAAA
GAGATGTAGCGCAAGGCGTCCGGAGCGCGTTGGAACGCTTGAACCTGCTT
TCGCGAGGACGCAGCCACGGGGGCACACAACCAGGTGGATGGCCGCCTCC
ACTTCTCTATTGCTGCGACTGCGAGGCAATTCACGAGGCTCGTTTTCACC
CCTCGCCCCCCCCCTCCTCCTGTTCCTCTTCCTCCTGCCCTGCAGGATCC
GTCGATTTGGACTAGCCCATCCGCGGAGGAGCTCAAAATCGTAGGTGACC
TGGAGCCCATTCCAAGTCAGCCGCTCGACCCCTACACGGCCGCTCGCTAC
GGCGAAGGGATGGGCCAGGCGGCGTGGCCCTTGGACGGAGGCGGCTACCG
CACGGCGGCCCCCACGCGTGGCATGGAGCTAACGAACGAATTGGATGCGT
CGATTTCGTCTTCCGCTGGAATAACGGAAGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1503:23242..24123-

>mRNA_H-canaliculatus_F_contig1503.3784.1 ID=mRNA_H-canaliculatus_F_contig1503.3784.1|Name=mRNA_H-canaliculatus_F_contig1503.3784.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1503:23242..24123- (Hapterophycus canaliculatus Oshoro5f female)
GAGAGCCAACAGCTTATAAGAAACTTTCCGGGTATAATGCAGGAGAGCCA
ACAGCTTATAAGAAACTTTCCGGGTATAATGCAGGATCCGTCGATTTGGA
CTAGCCCATCCGCGGAGGAGCTCAAAATCGTAGGTGACCTGGAGCCCATT
CCAAGTCAGCCGCTCGACCCCTACACGGCCGCTCGCTACGGCGAAGGGAT
GGGCCAGGCGGCGTGGCCCTTGGACGGAGGCGGCTACCGCACGGCGGCCC
CCACGCGTGGCATGGAGCTAACGAACGAATTGGATGCGTCGATTTCGTCT
TCCGCTGGAATAACGGAAGCCGATCCGTCGATTTGGACTAGCCCATCCGC
GGAGGAGCTCAAAATCGTAGGTGACCTGGAGCCCATTCCAAGTCAGCCGC
TCGACCCCTACACGGCCGCTCGCTACGGCGAAGGGATGGGCCAGGCGGCG
TGGCCCTTGGACGGAGGCGGCTACCGCACGGCGGCCCCCACGCGTGGCAT
GGAGCTAACGAACGAATTGGATGCGTCGATTTCGTCTTCCGCTGGAATAA
CGGAAGCC
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