mRNA_H-canaliculatus_F_contig150.3768.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig150.3768.1 vs. uniprot
Match: A0A6H5KCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG1_9PHAE) HSP 1 Score: 478 bits (1229), Expect = 7.060e-132 Identity = 928/2687 (34.54%), Postives = 1151/2687 (42.84%), Query Frame = 1
Query: 1486 SLVTEKGSEQAPRRGVEEEGEVACPTSAGAPSEDSHDGKXXXXXXXXXXXXXEPAAASSTREEVDGVAVAV----------ETAEATKNEGSXXXXXXXXADSEYGDPAGDGESDSAAHGRGNVGEEGGDAALCTSSGGSETDEGMRLQ---PSGLVASAANKEADRALATASALAGGTGLDTLSPERRGAAVVEMEEPRPEIPAVSGGFEEKDKAAVATCGLIGKQEPDSSSQGQDLRQGGSSVDELQEPRPPAIAAXXXXXXXXXXXXXXXXXXGFSDSSEIDSDDDPESTLDENSGVDSDDGSATSSESMKRGATGDKLPTSPQSPFSSALQFSSPPDADTVGLGXXXXXXXXXXXXXXESMCPTDTSNVEGFTHFLPSLEIEPAPSLGVVEASKGDGDKGLTQQEWRAGISPLTSPAVAGEASGGDAAGFRSREDTTAVVSPR---DVASASQGEGQPP----VPTSRTGEQEGYGVGRAGVTSAGFFVSLRGLEVTRRWHKSRRSFFSRMRTSRGITAFAWHVEVASTAAVAGVEA-----RVKDHGDDRPTKQKREMLCVAGGEGDSAFKLARPDLLSETDAGGVR--PNSSDGAGE--GQETPTSASAAET---APRGVGXXXXXXXXXXXXXXXRGGAVAVIEIVGDDVVKSRFVP--ARVR-----------------------------------------------------HSGSFVVSSSTPPLEDEEKRGEILVEGVGGSQTQSXXXXXXSSFAPSDYHQSHSDERPFPSVDEGSEKSRRTDGEAAGCSERFSVAPAGSPRPSSSSQDVFCAAGARAEESRRDDGGISMGIGGGGGGCVQSDSYHSLDETYSSAHGATPPDTPARVELEARTAPAKGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHETGGVLWG----------VRQGVDFDTFKVGGRIENDCPLLMDELELSNFYPDREVGQSGKGAKSQAKTLMVGQNGFKPSK-LVVEAGAVVSIKACCVGPNARLGQACVLSIVLEPVPQCMTGCFESCTAKPARVQRKARGGTLWAVFRKPGEYWIIDRLSEKRLKVTATARPEGLLETGDAAAAGLLPSAAPVKRAGGGSASEGPGLAWNMESKPSVHAKGAGGDDTAPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXPVADAVSSSAAEAL----RREGMADCGTRPSFIAKTESTTA---LRVLPAIRVKEGGDGLSLDELAEHNEFAKSCALGGVHVVSVSYRRGFEPSTLEVELTPGLGACVMCNLDSQQRVVQEVECRRLV----PTSDPAGSGGADEGWEEASEPPGVIEDGEGARGDAEEKNVDPDVKTARLGPRIFNKCHFILGRVGEFRLSYRNAGHRGLTVVVRSSLESSRPRGSFAKDDAAERSLSAGDGGPREEEAATLSSSGEGAISRRLERRDSATSTSSEECSSRGARSGSASSSSVESQP--GHRADFSSSRPSQAQPWSHVYENPAQDA-AAAGVGFSLGYVPTD--DGQSGFVHQRGQKKKHNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEASDWDQARVIVAPASSPAAAGPSPDSWTDMVGHGPT-TRRQHAAAAPGTRSERAVVAHDDGAAAVTSLCTTPVVQTPASACWVPDVPEEVACTQADGWKATAAATAAXXXXAAPQHSGCTAPEGPGFLPPPGAAPEDGESSTAKPSHRGARTTSIKSQGRNADYARSSASPVTRRAAAAAG------RKTTERKAEGGKQKNRTPAHAGKISESLGGAKIGRSAPCAPAASGVDSAELEERQEARDPSAKAGKAAGEVVMTNQAGRATQASWKSERSTAAP-SQQQQNAPETSNDPGGDRLRA---RERKPRGGGLSRQGHNPLANVFTPPYPPQGTTPGRVVDGNALFVHGTDLQGP--GRGSVGMPAASALPGMGDAETDGRNPARADREGPSILDRPEPPVTPAIPSPDRETVTAAAVAAAAAPGWLPSRAGPSRSHVSAAEVADYSHPSNKNAIAHRSRGVSASAGEQGLAAKSVWHRTDLLPGETSA-GEPRSGQGTGDSSRKGVICPGSAARSSSQRSATVNDHPRGAASSSA--PSDSTSLLPISSGANGSNVAGSSDSVRSTGRRSKKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCTRQQHPSVACQPVVTA-ARSSVQPQGVVRTDGNSASRGG--------TTAVSHGTDVPDQRDASAYVPWSSPTGRAPPVGSARRKAASAEGAPNGVRHVTQPPSVPGSAKDNQDRERPGRGRGRSAKNGVATSYEKSAYTAAGGSDAVGHGGGFRGGARRPPDPGLGWPSGGADGQWGGAAAGAAGAPAVGLTRAPPAPTPMQAQGHSSPPPPLPPGFSGGRVPATRTSPCNGAQPTSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------ASGAETLTLVA--SDPAG-IDETRGDPARGGGRAERFGNCSTKVSYGERARRNHVLRAEAAPFYPAA-AQAARGGWVGRQAAVARPAQFPAESRLPGGGYYVEERPQDVLPPPTAYEAQEAARMMRVYDDMMERLRTTGMDEPLPNGFTPRIYDFTDGGC 9042
SL TE G EQ PRR +EE + +AG E+ +G+ P AAS + E + A+ V E E ++NE S + GD +G G+ A G+V +E D AL SG +E E + L P+ S K D TAS A DT S +G V E+EEPRPE A AA AT +I K+ +S+G LR S D L P+ G D ++DSDDDP+ L +NS +DSDDG+A +S S++ GA+ + P SP AL P + G XXXXXXXXXX ES C SL+IEP ++ D LT+++W G+SPLTSPAV E S D F +D A V D A++GE Q V GE+E R+ V A V+ L + R+ MR S G + S ++A R D P++ E G G + L + + P+SSDG GE G E P ASA+ET RG GAV VI +VGDD K F+P A+VR H+G+FVVSS T P ED+ KRGEI+VE + TQS SF +D S + F V ++ + G R + + G R S A S+ D G + + G GGG +SD+Y SLD T AT + VE G+ XXXXXXXXXXXXXXXXXXXXXXX E GGV G V + FD KV G IE+D LL++ELE + YPDR G G G KSQ KTL+VG GF PSK +VV AGA V IKA V P GQ VLSI L V +KPG Y ++D S KRLKVT T RP+ L++ ++ A L P A P KR G + G N E S A GG + +S +A S+S E+L E + A TA L +LP IRVK+GGDGL+LDELAEH+ AL GVHVV+VS+RRGFEP+ LEV PGLGACVMC+LDSQQRV +EV CRRLV +S GS G + S G I EGA DA E DP+VK+ARLGP I NKC+F+LGR G++R+SYR RG++VVVR L SS GS A+ L RE +A LSS GA S R DS S SG A++++ +P G D SSS+P + H EN + A AAAG FSLG P D DGQ GFVHQR Q KK XXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+A P D+ T V T RR +A A T S + DD + S V+ P SA + A + DG +A AA+ +G + P P AP D ES++A+P+ GA T KS RN D S VT + +R E GKQK E+ G A P AA+G E + Q A P+ A G ++ +W+S+ AA SQQ + N P L + R + G +S + NP A VF P PPQ GR +G G P G GSVG P SA P +++ A E S PE TPA+ P T T A PG + SR RS +E S + A RG A++ K R + G+ +A G G G G + V G+ + S S V + R A+ SA PSD S+ SS S+ ST +K XXXXXXXXXXXXXXXXXXXXXXXXXXXX S T+Q+HP V VVTA + V G TTA S T ++ TG ++S EG GV V+ P + S + RE GRG G A + + + A D G GG G RP + A V T P A TP QAQ LPPGF G R+ C+ A P++A XXXXXXXXXXXXXXXXXXXXX A+ A TL A S+P G + + GGG FGNCSTK+S ER+RRN L A +PF+PA R G+ R A A+PAQFP ESRLPGGGY+VEE P D LPPP+A+E QEAA MM+VY+DMMERLRTTGMDE LPNGFTPRIYDFTDGGC
Sbjct: 158 SLDTESG-EQTPRRRKQEESFASA--NAGRSPEEPCEGRESPLQTFVHVGEGGPTAASDAKGEAENEAMEVIEEVGKEKEIEGGEHSENEDSKR---------DGGDVSGSGDYCCAG---GDVDQEVLDDALDIGSGSNEAGEILTLSTDIPATSGVSGGCKRGDELADTASHSADKIEPDTPS-RGKGTPVTEVEEPRPEATAAV--------AAAATV-VIAKE----TSKG--LRSALLSPDLLSPASEPSKCPELVLERFSGG--------GIGDYRDVDSDDDPDGDLSDNSRIDSDDGTALTSGSVRGGASEEAPPRSPV-----ALSSEPPTSSLAATDGFGSXXXXXXXXXXGESPCLAGVVLKAEAPQVSSSLQIEPV-TMRSRRMELSLVDNVLTRRDWPDGMSPLTSPAVEREPSRDDRVAFACSDDNAAAVVSSCTVDTGLATEGEQQVDMVAVVGGVDDGEKEEDLDPRSVVKGAPATVATASLGADDNDQSAERAG-DVMRASEGENDSVTAPQTVSPPGPTNMDAGDGEPRADASNDTLPSRFVHEATKGETGSGQESPPHEDSSCLRQVSSSDAATCPDSSDGGGERCGSEVPK-ASASETHGTCSRGKSCDDDDD-----------GAVTVIRMVGDDPTKKYFIPETAKVRVGARVQWVLGGGTGSVSETFHVRNGCPIIKNGWVTECSFSLSASQSRFTHTFQHAGTFVVSSITLPSEDDSKRGEIVVE---NTSTQSRSDS--DSFESADNATSTLPDDDFHDVAILADTAATHGGAGKPVMGRLAPSMVGVSRTS---------AALLGAHSKADSGDETHDLDGRGGG-RKSDNYRSLDNTDLDDTRATHSCGVSVVE--------SGRSDGSEWVGDAPEASSXXXXXXXXXXXXXXXXXXXXXXXSDSRGGVEKGGVDGGTGGTGSKGLSVHRDCGFDASKVEGGIEDDPALLINELEFLSRYPDRVAGMKGGGGKSQGKTLIVGGQGFTPSKPMVVPAGAAVFIKAASVWPYGGGGQERVLSIGLHIV----------------------------RTTKKPGVYTLVDNHSSKRLKVTVTERPDEPLQSDSSSVARLHPPA-PEKRDKDGRSRA--GSRQNAERSSSAEANSTGGGEVL--TSYPRSKKNKGKEKSGAVPASTTSTAATLAGNAASASTTESLIHAEEDESIPVADVARGAEASAGVPTAPSPLPLLPPIRVKQGGDGLTLDELAEHS------ALHGVHVVNVSHRRGFEPAALEVGFAPGLGACVMCDLDSQQRVTREVVCRRLVGREGKSSKEVGSRSVVGGLGDVSIGHGAIRGNEGAEDDAGEDEDDPNVKSARLGPGILNKCYFMLGRYGDYRISYRGDASRGVSVVVRLPLSSSEGGGSEDVMRASTSELEVS----REGDAWPLSSDVVGA-SEESRRCDSXXXXXXXXXXS-AVLSGPAATATESDEPQVGCATDASSSKPIEG---GHELENSSAAAGAAAGGRFSLGSAPVDWDDGQGGFVHQRAQMKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ASAIPR-DTGTSSVSRASTHLRRDQSACA--TASSQGATGDDDNVVLMGSSLNR--VRPPTSASRGVGISVNAADAETDGSEAAAAS------------AGSAITDKPTSFGNPEVAPGDVESTSARPAQIGACKTRKKSDSRNLDSIDRDTSSVTPAPXXXXXXXXXXQHQGPQRTVEVGKQKKGKLVRGDLSGETSGDAAPRALTPPVLAAAGAGEEEKHKPQAASGPAG-----AARAAAATGRGDSSMGAWRSDTKGAASYSQQYGGSTSAGNLPRASALDSGWSRTNQSHGTSVSGRWGNPPATVFAQPRPPQRILKGRGGEGERTASFGPRADDPATGGGSVGGP-VSARPSTIVVDSEEHELAGVGGESLSACGGPESIETPAVLPPAGATTT---TAGRVPPGRVSSRTDTCRSRPFVSEDDCPSFSPKGRSTADMCRGALATSEAPVAVDKEGLPRPHSVLGQAAATGVQSVGSGNGGGGKANV---GTHESACSSLSTDVVEGGRSWANVSASNPSDVASVGSTSS------TRASNFGAASTNTLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAEESMLKPSAKMQVSPPAEADR----SSTKQRHPVVVTSEVVTAGSHVDVHEAGAXXXXXXXXXXXXXXXXXXXXTTAASPSTSFRNRTTLETVT-----TGNVDSATGPTSLSSSDEG---GVARVSSMPGLASSGWTHAVRE--GRGGADEKGTGGAGAPNPAGHAAGDDGDGAGAGGVLSEGPNRPXXXXXXXXXXXEESS----------AAMVEATSLPAAATPTQAQAFQW----LPPGFGGDRL-------CDEAHPSAANVEEGTTKRASCTPTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTTPTDIPKAAAAAAGTLATAALTSNPTGGLGQNSARQGGGGG----FGNCSTKISLEERSRRNRALSAGTSPFFPARYGHRGRRGY--RTAQQAKPAQFPEESRLPGGGYFVEEGPNDTLPPPSAFEMQEAAHMMKVYNDMMERLRTTGMDETLPNGFTPRIYDFTDGGC 2638
BLAST of mRNA_H-canaliculatus_F_contig150.3768.1 vs. uniprot
Match: A0A6H5JW61_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW61_9PHAE) HSP 1 Score: 110 bits (276), Expect = 3.930e-20 Identity = 72/173 (41.62%), Postives = 95/173 (54.91%), Query Frame = 1
Query: 4048 VLWGVRQ--GVDFDTFKVGGRIENDCPLLMDELELSNFYPDREVGQSGKGAKSQAKTLMVGQNGFKPS-KLVVEAGAVVSIKACCVGPNARLGQACVLSIVLE-PVPQCMTGCFESCTAKPARVQRKARGGTLWAVFRKPGEYWIIDRLSEKRLKVTATARPEGLLETGDAAA 4554
V WGVR G D K GG I ND +L+D S+ +P R +G + A+ L+VG +GF+PS LV++A A VSI+ V + + LSI LE P + G FE + A G L AVFRKPG+YW++D LS+ RL+VTAT R EG+L D AA
Sbjct: 421 VKWGVRGVGGGGLDISKAGGGIANDAAVLVDVQTYSSLFPQRGMGVWRGHGSAVAQVLIVGDHGFEPSGPLVLQAEAAVSIETATVKRGSGVVPDRALSISLEIPTVHSLKGIFEV-------KKTNASGSPLMAVFRKPGDYWLVDHLSKARLRVTATKRSEGVLRAKDGAA 586
BLAST of mRNA_H-canaliculatus_F_contig150.3768.1 vs. uniprot
Match: D7G6R6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R6_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 2.740e-14 Identity = 57/137 (41.61%), Postives = 80/137 (58.39%), Query Frame = 1
Query: 4147 SNFYPDREVGQSGKGAKSQAKTLMVGQNGFKPS-KLVVEAGAVVSIKACCVGPNARLGQACVLSIVLE-PVPQCMTGCFESCTAKPARVQRKARGGTLWAVFRKPGEYWIIDRLSEKRLKVTATARPEGLLETGDAA 4551
S+ +P R +G + + A+ L+VG +GF+PS LV++A A VSI+ V + + LSI LE P + G FE + A G L AVFRKPG YW++D LS+ RL+VTAT RPEG+++ DAA
Sbjct: 227 SSLFPQRGLGVWPEHGSAVAQVLIVGDHGFEPSGPLVLQAEAAVSIETATVRRGSGMVPDRALSISLEIPTVHSLKGIFEV-------KKTNASGSPLMAVFRKPGAYWLVDHLSKARLRVTATKRPEGVVQAEDAA 356 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig150.3768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig150.3768.1 >prot_H-canaliculatus_F_contig150.3768.1 ID=prot_H-canaliculatus_F_contig150.3768.1|Name=mRNA_H-canaliculatus_F_contig150.3768.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=3015bp AAAAAAAAAAATPSLLPRQTQPSSERADQDYQEHSQQEQPRWRRLSPPLSback to top mRNA from alignment at H-canaliculatus_F_contig150:38330..50919- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig150.3768.1 ID=mRNA_H-canaliculatus_F_contig150.3768.1|Name=mRNA_H-canaliculatus_F_contig150.3768.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=12590bp|location=Sequence derived from alignment at H-canaliculatus_F_contig150:38330..50919- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig150:38330..50919- >mRNA_H-canaliculatus_F_contig150.3768.1 ID=mRNA_H-canaliculatus_F_contig150.3768.1|Name=mRNA_H-canaliculatus_F_contig150.3768.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=18090bp|location=Sequence derived from alignment at H-canaliculatus_F_contig150:38330..50919- (Hapterophycus canaliculatus Oshoro5f female)back to top |