mRNA_H-canaliculatus_F_contig14952.3729.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14952.3729.1
Unique NamemRNA_H-canaliculatus_F_contig14952.3729.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14952.3729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14952contigH-canaliculatus_F_contig14952:1164..1673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14952.3729.1prot_H-canaliculatus_F_contig14952.3729.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14952 1326..1667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.349921-UTR-H-canaliculatus_F_contig14952:1163..13251622929237.349921-UTR-H-canaliculatus_F_contig14952:1163..1325Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14952 1164..1325 +
1696845730.0459776-UTR-H-canaliculatus_F_contig14952:1163..13251696845730.0459776-UTR-H-canaliculatus_F_contig14952:1163..1325Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14952 1164..1325 +
1622929237.3830056-UTR-H-canaliculatus_F_contig14952:1667..16731622929237.3830056-UTR-H-canaliculatus_F_contig14952:1667..1673Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14952 1668..1673 +
1696845730.0626779-UTR-H-canaliculatus_F_contig14952:1667..16731696845730.0626779-UTR-H-canaliculatus_F_contig14952:1667..1673Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14952 1668..1673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.3645804-CDS-H-canaliculatus_F_contig14952:1325..16671622929237.3645804-CDS-H-canaliculatus_F_contig14952:1325..1667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14952 1326..1667 +
1696845730.0543604-CDS-H-canaliculatus_F_contig14952:1325..16671696845730.0543604-CDS-H-canaliculatus_F_contig14952:1325..1667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14952 1326..1667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14952.3729.1

>prot_H-canaliculatus_F_contig14952.3729.1 ID=prot_H-canaliculatus_F_contig14952.3729.1|Name=mRNA_H-canaliculatus_F_contig14952.3729.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp
MRKRHPAPARRSRWRETLDNRSHVPCPWWLAICANVQQWQQRCTPRRKAL
GRRSSLVAPSARLSELTRRFESPPASRACNDIECFTSTRTTAEFFRPVQR
YPDDGNTLTPPSS*
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mRNA from alignment at H-canaliculatus_F_contig14952:1164..1673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14952.3729.1 ID=mRNA_H-canaliculatus_F_contig14952.3729.1|Name=mRNA_H-canaliculatus_F_contig14952.3729.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=510bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14952:1164..1673+ (Hapterophycus canaliculatus Oshoro5f female)
TTGGGCGTGCCTGCGAGACTTGGTGGTTCGCGTCCGAGCAAGCGCCTGTT
CCGGTGTGTGCCGCCCTTCCCCGGGAGGTGGCTTGACCTCAAGGCACTGC
TGTTGCCTGTTGGACCAGGCTCTGGTACGAGAACGAAGAGGTGCCGAGGT
TGCGGGTGAGGCATGCGTAAACGCCACCCTGCTCCTGCTAGGCGAAGCCG
GTGGCGTGAGACGTTGGACAACCGCTCTCATGTGCCCTGTCCGTGGTGGC
TCGCAATCTGCGCGAACGTGCAGCAGTGGCAGCAGCGCTGCACCCCTCGG
CGCAAGGCGTTGGGGAGGAGGTCGAGTCTCGTGGCCCCCTCAGCCAGGCT
GAGCGAATTGACCAGGAGATTCGAGTCTCCACCCGCCTCCAGGGCGTGCA
ACGATATCGAGTGCTTTACATCGACTCGAACAACAGCGGAGTTTTTTCGG
CCCGTACAACGATACCCTGATGATGGCAACACCCTGACACCCCCAAGTTC
CTGATTTCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14952:1164..1673+

>mRNA_H-canaliculatus_F_contig14952.3729.1 ID=mRNA_H-canaliculatus_F_contig14952.3729.1|Name=mRNA_H-canaliculatus_F_contig14952.3729.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14952:1164..1673+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGTAAACGCCACCCTGCTCCTGCTAGGCGAAGCCGGTGGCGTGAGAC
GTTGGACAACCGCTCTCATGTGCCCTGTCCGTGGTGGCTCGCAATCTGCG
CGAACGTGCAGCAGTGGCAGCAGCGCTGCACCCCTCGGCGCAAGGCGTTG
GGGAGGAGGTCGAGTCTCGTGGCCCCCTCAGCCAGGCTGAGCGAATTGAC
CAGGAGATTCGAGTCTCCACCCGCCTCCAGGGCGTGCAACGATATCGAGT
GCTTTACATCGACTCGAACAACAGCGGAGTTTTTTCGGCCCGTACAACGA
TACCCTGATGATGGCAACACCCTGACACCCCCAAGTTCCTGAATGCGTAA
ACGCCACCCTGCTCCTGCTAGGCGAAGCCGGTGGCGTGAGACGTTGGACA
ACCGCTCTCATGTGCCCTGTCCGTGGTGGCTCGCAATCTGCGCGAACGTG
CAGCAGTGGCAGCAGCGCTGCACCCCTCGGCGCAAGGCGTTGGGGAGGAG
GTCGAGTCTCGTGGCCCCCTCAGCCAGGCTGAGCGAATTGACCAGGAGAT
TCGAGTCTCCACCCGCCTCCAGGGCGTGCAACGATATCGAGTGCTTTACA
TCGACTCGAACAACAGCGGAGTTTTTTCGGCCCGTACAACGATACCCTGA
TGATGGCAACACCCTGACACCCCCAAGTTCCTGA
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