mRNA_H-canaliculatus_F_contig14952.3728.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14952.3728.1
Unique NamemRNA_H-canaliculatus_F_contig14952.3728.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14952.3728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14952contigH-canaliculatus_F_contig14952:544..1051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size509
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.2873945-CDS-H-canaliculatus_F_contig14952:543..9181622929237.2873945-CDS-H-canaliculatus_F_contig14952:543..918Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14952 544..918 +
1696845730.0204194-CDS-H-canaliculatus_F_contig14952:543..9181696845730.0204194-CDS-H-canaliculatus_F_contig14952:543..918Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14952 544..918 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.3040853-UTR-H-canaliculatus_F_contig14952:918..10511622929237.3040853-UTR-H-canaliculatus_F_contig14952:918..1051Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14952 919..1051 +
1696845730.031088-UTR-H-canaliculatus_F_contig14952:918..10511696845730.031088-UTR-H-canaliculatus_F_contig14952:918..1051Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14952 919..1051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14952.3728.1prot_H-canaliculatus_F_contig14952.3728.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14952 544..918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14952.3728.1

>prot_H-canaliculatus_F_contig14952.3728.1 ID=prot_H-canaliculatus_F_contig14952.3728.1|Name=mRNA_H-canaliculatus_F_contig14952.3728.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
YQQRAHLPSLQITCLPRSGAIAHCCWHKSTRHVQNVCCSVHQHVVWDELQ
KTACTKRFFSCQKSAQQAKNTADVYSNAGTLWAKPLLIVLYRILAGVREV
HRRRAPQLHEQSLAGRWVESRKDG*
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mRNA from alignment at H-canaliculatus_F_contig14952:544..1051+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14952.3728.1 ID=mRNA_H-canaliculatus_F_contig14952.3728.1|Name=mRNA_H-canaliculatus_F_contig14952.3728.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=508bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14952:544..1051+ (Hapterophycus canaliculatus Oshoro5f female)
TACCAACAGCGAGCACATCTTCCATCCCTGCAGATCACATGCCTGCCACG
CAGCGGAGCGATCGCACACTGCTGTTGGCACAAGAGTACGCGACATGTAC
AAAATGTGTGCTGTAGTGTCCACCAGCACGTGGTTTGGGACGAACTACAG
AAAACGGCATGTACGAAACGGTTTTTTTCGTGCCAAAAATCGGCACAGCA
GGCTAAAAACACCGCTGATGTCTACTCCAATGCCGGTACTTTATGGGCCA
AGCCCCTCCTGATTGTCCTGTACCGAATTCTGGCGGGAGTTCGAGAGGTA
CACCGCCGCCGGGCTCCTCAGTTGCATGAGCAATCCCTCGCGGGTCGATG
GGTGGAAAGTAGAAAGGACGGATAGCTCTGACACACGTCGATTATTGACT
CTCTCCTGCACGCTTGCGTCTGGGAGTTAAGAAGAGGGACAAGCCAACCA
AGCGCGGAGGTCCGGGCGTGGATGTTCCCTTTTTGCGCAAGAAAACGGTG
AAGGAGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14952:544..1051+

>mRNA_H-canaliculatus_F_contig14952.3728.1 ID=mRNA_H-canaliculatus_F_contig14952.3728.1|Name=mRNA_H-canaliculatus_F_contig14952.3728.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14952:544..1051+ (Hapterophycus canaliculatus Oshoro5f female)
TACCAACAGCGAGCACATCTTCCATCCCTGCAGATCACATGCCTGCCACG
CAGCGGAGCGATCGCACACTGCTGTTGGCACAAGAGTACGCGACATGTAC
AAAATGTGTGCTGTAGTGTCCACCAGCACGTGGTTTGGGACGAACTACAG
AAAACGGCATGTACGAAACGGTTTTTTTCGTGCCAAAAATCGGCACAGCA
GGCTAAAAACACCGCTGATGTCTACTCCAATGCCGGTACTTTATGGGCCA
AGCCCCTCCTGATTGTCCTGTACCGAATTCTGGCGGGAGTTCGAGAGGTA
CACCGCCGCCGGGCTCCTCAGTTGCATGAGCAATCCCTCGCGGGTCGATG
GGTGGAAAGTAGAAAGGACGGATAGTACCAACAGCGAGCACATCTTCCAT
CCCTGCAGATCACATGCCTGCCACGCAGCGGAGCGATCGCACACTGCTGT
TGGCACAAGAGTACGCGACATGTACAAAATGTGTGCTGTAGTGTCCACCA
GCACGTGGTTTGGGACGAACTACAGAAAACGGCATGTACGAAACGGTTTT
TTTCGTGCCAAAAATCGGCACAGCAGGCTAAAAACACCGCTGATGTCTAC
TCCAATGCCGGTACTTTATGGGCCAAGCCCCTCCTGATTGTCCTGTACCG
AATTCTGGCGGGAGTTCGAGAGGTACACCGCCGCCGGGCTCCTCAGTTGC
ATGAGCAATCCCTCGCGGGTCGATGGGTGGAAAGTAGAAAGGACGGATAG
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