mRNA_H-canaliculatus_F_contig14948.3725.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14948.3725.1
Unique NamemRNA_H-canaliculatus_F_contig14948.3725.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14948.3725.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 7.060e-77
Identity = 139/200 (69.50%), Postives = 154/200 (77.00%), Query Frame = -1 
Query:   31 AGGNRPNGAAGGVKGENGVSFN-PRGSWGSGXXXXXXXXAPAERPVSQLINSMLEHQGDILSGYGKLDMILRLARERWQEPPPPVEANLAAVAEHLLGFLGAIDEEGWFAEPVSESAAPGYIAAILRPMDLGTMRSRAESRAYRSVAELQDDLLLVVANCLSYNSPDTMFAEAATSLAQQASGAYGQALAMASTTRGWGL 627
            A G+ PNGA  G  GENGV    P G+ G G           ERP+S LIN MLEHQ D+L+ +GKL +ILRLARERWQ PPPPV+ANL+A+ EHLLG LGAIDEEGWFAEPVSESAAPGYI+AILRPMDLGT+R R E R YR VAELQDDLLLVVANC +YNSP T+F  AATSLA+QASGAY QALA AS   GWGL
Sbjct: 1791 AAGDPPNGAVRGA-GENGVGLGVPNGAGGEGANGVAAVAPAPERPISDLINGMLEHQKDVLARHGKLGVILRLARERWQSPPPPVDANLSALTEHLLGILGAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGTLFEAAATSLAEQASGAYAQALAAASAINGWGL 1989
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BLAST of mRNA_H-canaliculatus_F_contig14948.3725.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.250e-40
Identity = 79/96 (82.29%), Postives = 85/96 (88.54%), Query Frame = -1 
Query:   61 HLLGFLGAIDEEGWFAEPVSESAAPGYIAAILRPMDLGTMRSRAESRAYRSVAELQDDLLLVVANCLSYNSPDTMFAEAATSLAQQASGAYGQALA 348
            HLLG LGAIDEEGWFAEPVSE+AAPGYI+AILRPMDLGT+R R E R YR V+ELQDDLLLVVANC +YNSP TMF  AATSLA+QASGAY QALA
Sbjct: 1856 HLLGILGAIDEEGWFAEPVSEAAAPGYISAILRPMDLGTVRGRLEGRRYRDVSELQDDLLLVVANCFTYNSPGTMFEAAATSLAEQASGAYAQALA 1951
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BLAST of mRNA_H-canaliculatus_F_contig14948.3725.1 vs. uniprot
Match: A0A7S2FKR1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKR1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.060e-13
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = -1 
Query:   61 WQEPPPPVEANLAAVAEHLLGFLGAIDEEGWFAEPVSESAAP--GYIAAI-LRPMDLGTMRSRAESRAYRSVAELQDDLLLVVANCLSYNSPDTMFAEAATSLAQQASGAYGQALA 399
            W EP P   A L  V   ++  L  +DE G FAEPV +      G++A I    +DLGTM+   +SR Y+SVA L+DDL +++ NC++YN PD++F   A  +A QA      A+A
Sbjct:   39 WDEPKP---AQLGGVCREVVTKLMDLDESGIFAEPVPDDVPDYDGHLALIGTERIDLGTMKK--QSRRYKSVAALRDDLTMMLRNCMTYNEPDSIFFAVAEMIAVQAPAIAASAIA 149
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BLAST of mRNA_H-canaliculatus_F_contig14948.3725.1 vs. uniprot
Match: A0A8B7NCE2_HYAAZ (bromodomain-containing protein 7-like n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NCE2_HYAAZ)

HSP 1 Score: 78.6 bits (192), Expect = 2.280e-13
Identity = 43/102 (42.16%), Postives = 56/102 (54.90%), Query Frame = -1 
Query:  121 RERWQEPPPPVEANLAAVAE------HLLGFLGAIDEEGWFAEPVSESAAPGYIAAILRPMDLGTMRSRAESRAYRSVAELQDDLLLVVANCLSYNSPDTMF 408
            RE  Q P  P  ++ A  A       HLL  L   D   +F EPV++  APGY + I  PM   TMR +    AY S+ E +DD+ L+VANCL YN PDT++
Sbjct:   96 REASQIPAAPAASSTAVAAAFKELLTHLLKQLEKKDINQFFLEPVTDLIAPGYSSIITEPMCFYTMREKIAQGAYSSLTEYEDDVKLIVANCLKYNGPDTVY 197
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BLAST of mRNA_H-canaliculatus_F_contig14948.3725.1 vs. uniprot
Match: UPI001C411C08 (bromodomain and PHD finger-containing protein 3-like n=2 Tax=Solea senegalensis TaxID=28829 RepID=UPI001C411C08)

HSP 1 Score: 77.8 bits (190), Expect = 5.160e-13
Identity = 46/106 (43.40%), Postives = 61/106 (57.55%), Query Frame = -1 
Query:  109 RLARERWQEPPPPVEANLAAVAEHLLGFLGAIDEEGW---FAEPVSESAAPGYIAAILRPMDLGTMRSRAESRAYRSVAELQDDLLLVVANCLSYNSPDTMFAEAA 417
            +L RE+ +     +E  L  +   L   L  + E+     FAEPV     P Y+  I +PMD  TMRS+ ES AYRSVA+L+ D  L+V+NCL YNS DT+F  AA
Sbjct:  603 KLKREQVKVHQAFLEMQLTPMLMLLSSTLDQLQEKDTAKIFAEPVDIKEVPDYLEFINQPMDFSTMRSKLESHAYRSVADLEADFNLMVSNCLLYNSKDTLFHRAA 708
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BLAST of mRNA_H-canaliculatus_F_contig14948.3725.1 vs. uniprot
Match: UPI0015B0851C (bromodomain and PHD finger-containing protein 3 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015B0851C)

HSP 1 Score: 77.8 bits (190), Expect = 5.190e-13
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = -1 
Query:  100 RLARERWQEPPPPVEANLAAVAEHLLGFLGAIDEEG---WFAEPVSESAAPGYIAAILRPMDLGTMRSRAESRAYRSVAELQDDLLLVVANCLSYNSPDTMFAEAATSL 417
            +L RE+ +     +E  L      L   L  + E+     FA+PV+    P Y+  I +PMD  TMRSR E+  YRS+AEL+ D  L+VANCL YNS DT+F  AA  L
Sbjct:  638 KLKREQVKVHQATLEMQLTPALVLLRSTLDQLQEKDPAQIFAQPVNLKEVPDYLEFISQPMDFSTMRSRLEAHGYRSLAELEGDFNLMVANCLRYNSRDTVFHRAAVRL 746
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BLAST of mRNA_H-canaliculatus_F_contig14948.3725.1 vs. uniprot
Match: A0A3B3ZPQ3_9GOBI (Bromodomain and PHD finger containing, 3a n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B3ZPQ3_9GOBI)

HSP 1 Score: 77.4 bits (189), Expect = 6.440e-13
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = -1 
Query:  121 RLARERWQEPPPPVEANLAAVAEHLLGFLGAIDEEGW---FAEPVSESAAPGYIAAILRPMDLGTMRSRAESRAYRSVAELQDDLLLVVANCLSYNSPDTMF 417
            RL RE+ +     +E  L      L   L  + E+     F++PV+ S  P Y+  + +PMDL TMRS+ E+  Y +++ELQ D  L++ANCL YNS DTMF
Sbjct:  548 RLKREQMKIQQAALELKLTPALVLLRTTLDQLQEKDTSKIFSQPVNLSEVPDYLEFVSQPMDLATMRSKLEAHGYTTISELQKDFELMIANCLKYNSKDTMF 649
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BLAST of mRNA_H-canaliculatus_F_contig14948.3725.1 vs. uniprot
Match: A0A3B3ZPB9_9GOBI (Bromodomain and PHD finger containing, 3a n=3 Tax=Oxudercinae TaxID=497678 RepID=A0A3B3ZPB9_9GOBI)

HSP 1 Score: 77.4 bits (189), Expect = 6.930e-13
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = -1 
Query:  121 RLARERWQEPPPPVEANLAAVAEHLLGFLGAIDEEGW---FAEPVSESAAPGYIAAILRPMDLGTMRSRAESRAYRSVAELQDDLLLVVANCLSYNSPDTMF 417
            RL RE+ +     +E  L      L   L  + E+     F++PV+ S  P Y+  + +PMDL TMRS+ E+  Y +++ELQ D  L++ANCL YNS DTMF
Sbjct:  566 RLKREQMKIQQAALELKLTPALVLLRTTLDQLQEKDTSKIFSQPVNLSEVPDYLEFVSQPMDLATMRSKLEAHGYTTISELQKDFELMIANCLKYNSKDTMF 667
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BLAST of mRNA_H-canaliculatus_F_contig14948.3725.1 vs. uniprot
Match: UPI00145A73F1 (bromodomain and PHD finger-containing protein 3 isoform X1 n=2 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=UPI00145A73F1)

HSP 1 Score: 77.4 bits (189), Expect = 6.940e-13
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = -1 
Query:  121 RLARERWQEPPPPVEANLAAVAEHLLGFLGAIDEEGW---FAEPVSESAAPGYIAAILRPMDLGTMRSRAESRAYRSVAELQDDLLLVVANCLSYNSPDTMF 417
            RL RE+ +     +E  L      L   L  + E+     F++PV+ S  P Y+  + +PMDL TMRS+ E+  Y +++ELQ D  L++ANCL YNS DTMF
Sbjct:  566 RLKREQMKIQQAALELKLTPALVLLRTTLDQLQEKDTSKIFSQPVNLSEVPDYLEFVSQPMDLATMRSKLEAHGYTTISELQKDFELMIANCLKYNSKDTMF 667
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BLAST of mRNA_H-canaliculatus_F_contig14948.3725.1 vs. uniprot
Match: UPI000E4552CD (bromodomain and PHD finger-containing protein 3-like isoform X2 n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=UPI000E4552CD)

HSP 1 Score: 77.0 bits (188), Expect = 9.480e-13
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = -1 
Query:  109 RLARERWQEPPPPVEANLAAVAEHLLGFLGAIDEEGW---FAEPVSESAAPGYIAAILRPMDLGTMRSRAESRAYRSVAELQDDLLLVVANCLSYNSPDTMFAEAA 417
            +L RE+ +     +E  L  V   L   L  + E+     FAEPV+    P Y+  I +PMD  TMR++ ES AYRSVA+L+ D  L+V+NCL YN+ DT+F  AA
Sbjct:  603 KLKREQVKVHQAALEMQLTPVLVLLRSTLDQLQEKDTAQIFAEPVNIKEVPDYLDFISQPMDFTTMRTKLESHAYRSVADLEADFNLMVSNCLLYNAKDTVFHRAA 708
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14948.3725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTA2_9PHAE7.060e-7769.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP1_ECTSI1.250e-4082.29WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
A0A7S2FKR1_9STRA1.060e-1340.52Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8B7NCE2_HYAAZ2.280e-1342.16bromodomain-containing protein 7-like n=1 Tax=Hyal... [more]
UPI001C411C085.160e-1343.40bromodomain and PHD finger-containing protein 3-li... [more]
UPI0015B0851C5.190e-1342.20bromodomain and PHD finger-containing protein 3 n=... [more]
A0A3B3ZPQ3_9GOBI6.440e-1340.20Bromodomain and PHD finger containing, 3a n=1 Tax=... [more]
A0A3B3ZPB9_9GOBI6.930e-1340.20Bromodomain and PHD finger containing, 3a n=3 Tax=... [more]
UPI00145A73F16.940e-1340.20bromodomain and PHD finger-containing protein 3 is... [more]
UPI000E4552CD9.480e-1342.45bromodomain and PHD finger-containing protein 3-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14948contigH-canaliculatus_F_contig14948:111..752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size644
Cds size642
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929236.5896778-CDS-H-canaliculatus_F_contig14948:110..7521622929236.5896778-CDS-H-canaliculatus_F_contig14948:110..752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14948 111..752 +
1696845729.587373-CDS-H-canaliculatus_F_contig14948:110..7521696845729.587373-CDS-H-canaliculatus_F_contig14948:110..752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14948 111..752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14948.3725.1prot_H-canaliculatus_F_contig14948.3725.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14948 111..752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14948.3725.1

>prot_H-canaliculatus_F_contig14948.3725.1 ID=prot_H-canaliculatus_F_contig14948.3725.1|Name=mRNA_H-canaliculatus_F_contig14948.3725.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=214bp
RRRRGTPCYLQPPTSRRRRHGQRLPVRPARLLGQARRRLREHGVGRVVRQ
AVGHHQQQVVLELGHRPVGTALGARPHRAQVHRPQDRGDVPRRGRLGHGL
REPALLVDGAEESQEVLGDGGEVSLHRRRRLLPPLPRQAQDHVQLAVARQ
DVSLVLQHAVDELADGALRGGGGAATTAAAAPPRPAWVKRHPVLAFHAPG
GTIRSVSSRWHRC*
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mRNA from alignment at H-canaliculatus_F_contig14948:111..752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14948.3725.1 ID=mRNA_H-canaliculatus_F_contig14948.3725.1|Name=mRNA_H-canaliculatus_F_contig14948.3725.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14948:111..752+ (Hapterophycus canaliculatus Oshoro5f female)
CGCCGCCGCCGCGGAACCCCCTGCTACCTCCAACCCCCAACCTCGCGTCG
TAGACGCCATGGCCAGCGCCTGCCCGTACGCCCCGCTCGCCTGCTGGGCC
AGGCTCGTCGCCGCCTCCGCGAACATGGTGTCGGGCGAGTTGTACGACAG
GCAGTTGGCCACCACCAGCAGCAGGTCGTCCTGGAGCTCGGCCACCGACC
GGTAGGCACGGCTCTCGGCGCGCGACCTCATCGTGCCCAGGTCCATCGGC
CGCAAGATCGCGGCGATGTACCCCGGCGCGGCCGACTCGGACACGGGCTC
CGCGAACCAGCCCTCCTCGTCGATGGCGCCGAGGAATCCCAGGAGGTGCT
CGGCGACGGCGGCGAGGTTAGCCTCCACCGGCGGCGGCGGCTCCTGCCAC
CTCTCCCGCGCCAGGCGCAGGATCATGTCCAGCTTGCCGTAGCCCGACAG
GATGTCTCCCTGGTGCTCCAGCATGCTGTTGATGAGCTGGCTGACGGGGC
GCTCCGCGGGGGCGGCGGCGCCGCCACCACCGCCGCCGCCGCTCCCCCAC
GACCCGCGTGGGTTAAAAGACACCCCGTTCTCGCCTTTCACGCCCCCGGC
GGCACCATTCGGTCGGTTTCCTCCCGCTGGCATCGATGCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14948:111..752+

>mRNA_H-canaliculatus_F_contig14948.3725.1 ID=mRNA_H-canaliculatus_F_contig14948.3725.1|Name=mRNA_H-canaliculatus_F_contig14948.3725.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1284bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14948:111..752+ (Hapterophycus canaliculatus Oshoro5f female)
CGCCGCCGCCGCGGAACCCCCTGCTACCTCCAACCCCCAACCTCGCGTCG
TAGACGCCATGGCCAGCGCCTGCCCGTACGCCCCGCTCGCCTGCTGGGCC
AGGCTCGTCGCCGCCTCCGCGAACATGGTGTCGGGCGAGTTGTACGACAG
GCAGTTGGCCACCACCAGCAGCAGGTCGTCCTGGAGCTCGGCCACCGACC
GGTAGGCACGGCTCTCGGCGCGCGACCTCATCGTGCCCAGGTCCATCGGC
CGCAAGATCGCGGCGATGTACCCCGGCGCGGCCGACTCGGACACGGGCTC
CGCGAACCAGCCCTCCTCGTCGATGGCGCCGAGGAATCCCAGGAGGTGCT
CGGCGACGGCGGCGAGGTTAGCCTCCACCGGCGGCGGCGGCTCCTGCCAC
CTCTCCCGCGCCAGGCGCAGGATCATGTCCAGCTTGCCGTAGCCCGACAG
GATGTCTCCCTGGTGCTCCAGCATGCTGTTGATGAGCTGGCTGACGGGGC
GCTCCGCGGGGGCGGCGGCGCCGCCACCACCGCCGCCGCCGCTCCCCCAC
GACCCGCGTGGGTTAAAAGACACCCCGTTCTCGCCTTTCACGCCCCCGGC
GGCACCATTCGGTCGGTTTCCTCCCGCTGGCATCGATGCTGACGCCGCCG
CCGCGGAACCCCCTGCTACCTCCAACCCCCAACCTCGCGTCGTAGACGCC
ATGGCCAGCGCCTGCCCGTACGCCCCGCTCGCCTGCTGGGCCAGGCTCGT
CGCCGCCTCCGCGAACATGGTGTCGGGCGAGTTGTACGACAGGCAGTTGG
CCACCACCAGCAGCAGGTCGTCCTGGAGCTCGGCCACCGACCGGTAGGCA
CGGCTCTCGGCGCGCGACCTCATCGTGCCCAGGTCCATCGGCCGCAAGAT
CGCGGCGATGTACCCCGGCGCGGCCGACTCGGACACGGGCTCCGCGAACC
AGCCCTCCTCGTCGATGGCGCCGAGGAATCCCAGGAGGTGCTCGGCGACG
GCGGCGAGGTTAGCCTCCACCGGCGGCGGCGGCTCCTGCCACCTCTCCCG
CGCCAGGCGCAGGATCATGTCCAGCTTGCCGTAGCCCGACAGGATGTCTC
CCTGGTGCTCCAGCATGCTGTTGATGAGCTGGCTGACGGGGCGCTCCGCG
GGGGCGGCGGCGCCGCCACCACCGCCGCCGCCGCTCCCCCACGACCCGCG
TGGGTTAAAAGACACCCCGTTCTCGCCTTTCACGCCCCCGGCGGCACCAT
TCGGTCGGTTTCCTCCCGCTGGCATCGATGCTGA
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