mRNA_H-canaliculatus_F_contig1494.3720.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1494.3720.1
Unique NamemRNA_H-canaliculatus_F_contig1494.3720.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1494.3720.1 vs. uniprot
Match: D7G2R6_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R6_ECTSI)

HSP 1 Score: 457 bits (1177), Expect = 2.590e-154
Identity = 245/328 (74.70%), Postives = 268/328 (81.71%), Query Frame = 1 
Query:    4 RLEDGASRDQPQGGGSSLSQRATALRLGGVGQFHLISGGKYCRGAWGLNVASRLRGGAAAAGDDTSEXXXSDESFGXXXXXXXXFEDEDFGEASFVGRLVQDWKKTPVITRTFFQVSVGIAVLAAVLNDNQWPSFLLLDWEPAILKLQLWRLFTPFLYLGPLGLNFMLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGVGSLLLLTLATGADINSSYTLGHSLSCFLVMVWSRKFAGSRVNVLEMFELSTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWETLSIKGLLKAPKPLVNLFRNNAFLRAEYARAGKDYGQELPPLHDD 987
            R E+G  R QP+    SL QRA ALRLGG  Q  L   G   +GAWGL VAS LRGGA             DE   XXXXXXXX    DFGEASFV RL QDWKKTPVITR +FQVSV I + AA LN+NQWP+FLLLDW PAI KLQLWRLFTPFL LGPLGLNF LT HF+WTYMS LEKLHYREPHTFVMLLAFG+ SLLLLTL TG D+NSSYTLGHS++CFLVM+WSRKFAG+RVN+L+MFEL TELLPYFFVAQTLMMEGVIPWVDLSG+LIGYAW+TLS+KGLLKAPKPLVNLFRNNAFLRAEYA+AGK+YGQ++P LHDD
Sbjct:   40 RHENGKQRQQPEQ--ESLQQRAAALRLGGDRQSFLAHSGNGRKGAWGLTVASGLRGGA------------DDEDXXXXXXXXXXXXXXDFGEASFVDRLKQDWKKTPVITRAYFQVSVAITLAAAALNENQWPTFLLLDWRPAIFKLQLWRLFTPFLNLGPLGLNFALTAHFAWTYMSHLEKLHYREPHTFVMLLAFGMSSLLLLTLVTGGDVNSSYTLGHSMNCFLVMIWSRKFAGTRVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVP-LHDD 352
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BLAST of mRNA_H-canaliculatus_F_contig1494.3720.1 vs. uniprot
Match: A0A7S2Y3M2_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3M2_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.350e-57
Identity = 100/234 (42.74%), Postives = 157/234 (67.09%), Query Frame = 1 
Query:  259 EDEDFGEASFVGRLVQDWKKTPVITRTFFQVSVGIAVLAAVLNDNQWPSFLLLDWEPAILKLQLWRLFTPFLYLGPLGLNFMLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGVGSLLLLTLATGADINSSYTLGHSLSCFLVMVWSRKFAGSRVNVLEMFELSTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWETLSIKGLLKAPKPLVNLFRNNAFLRAEYARAGKDYG 960
            ++ DF   S + R+   WKKTP I++ +   S+ I + A    +NQWP  LL+DW+  + KLQ+WRL T FLY G  GL+++LT HF WTY+ QLEKLH+R+P  F ++LAFG+ ++L ++L    +  S   LGH+LSCFLV +W++K+ G+ VNV+++F +S ELLP+FFVAQTL++ G +P  D+ G+  G+ +  L++K +  AP+ L  +F  ++ ++  Y R  ++YG
Sbjct:  103 DEADFKGESILVRMKTAWKKTPPISKIYVLSSMSITIGAWAFKNNQWPQLLLMDWDKVLKKLQVWRLVTSFLYFGNFGLDYILTLHFVWTYLGQLEKLHFRKPADFFVMLAFGM-TVLHISLLILKNYLSPNVLGHNLSCFLVYIWAKKYEGNDVNVMDLFHMSAELLPWFFVAQTLVLTGELPIADIIGIAAGHMYHYLNLKKMTSAPEFLQRIFEIDS-IKMRYERYEEEYG 334
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BLAST of mRNA_H-canaliculatus_F_contig1494.3720.1 vs. uniprot
Match: F0YAW8_AURAN (Derlin n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAW8_AURAN)

HSP 1 Score: 190 bits (482), Expect = 1.170e-52
Identity = 93/226 (41.15%), Postives = 141/226 (62.39%), Query Frame = 1 
Query:  283 SFVGRLVQDWKKTPVITRTFFQVSVGIAVLAAVLNDNQWPSFLLLDWEPAILKLQLWRLFTPFLYLGPLGLNFMLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGVGSLLLLTLATGADINSSYTLGHSLSCFLVMVWSRKFAGSRVNVLEMFELSTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWETLSIKGLLKAPKPLVNLFRNNAFLRAEYARAGKDYG 960
            +F  R ++ W +TP +T+ +   S+ +   + +  +NQWP +L L+W     + Q+WR  T FL+ GP GL+++LT HF WTYM  LEKL + EP  F++++AFG GSLLL     G     ++ LGH+LSCFLV +W+R + G  V+V+E F +  ELLP+FF AQT ++E  +P  DL G+ IG+ +     + +L APKPL +LF +N  L A Y    +++G
Sbjct:   97 TFKSRTLKSWAETPPMTQAYVGASLALTCGSFLAFNNQWPEWLHLNWGAVFKRAQVWRPLTAFLFYGPFGLSYLLTIHFVWTYMGTLEKLSHTEPWEFLVMMAFGAGSLLL---GVGLGGMKTHFLGHNLSCFLVYIWARTYEGQEVSVMEFFNIKAELLPWFFAAQTYLLEHELPIHDLLGIAIGHLYTVARQRKILGAPKPLQDLFTSNPALMARYEAMAEEFG 319
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BLAST of mRNA_H-canaliculatus_F_contig1494.3720.1 vs. uniprot
Match: A0A6V1KE03_HETAK (Derlin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KE03_HETAK)

HSP 1 Score: 190 bits (482), Expect = 1.860e-52
Identity = 105/274 (38.32%), Postives = 159/274 (58.03%), Query Frame = 1 
Query:  163 LRGGAAAAGDDTSEXXXSDESFGXXXXXXXXFE--------DEDFGEASFVGRLVQDWKKTPVITRTFFQVSVGIAVLAAVLNDNQWPSFLLLDWEPAILKLQLWRLFTPFLYLGPLGLNFMLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGVGSLLLLTLATGADINSSYTLGHSLSCFLVMVWSRKFAGSRVNVLEMFELSTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWETLSIKGLLKAPKPLVNLFRNNAFLRAEYARAGKDYG 960
            +RGGA +  D  S+    D   G        F+        ++ F EA+ V R++  W K+  +T+ F  +SV I V+  + N NQWP+ L LDW+ A    Q WR  TPF + GPLG+N++LT  F WTYM+ LEK+  +EPH F ++   G  +L+ L  A G D      LGH+L+CFLV VWSR   G  V + + FE+   L+P+FF  Q ++MEG+IP+ D+ G+LIG+A+  L  K LL AP  + ++F++   L+++Y    +++G
Sbjct:   60 IRGGADSESDSESDFEYDD---GDLSDDEEYFDGAVGDEGNEDSFKEATLVQRIMISWNKSAPLTKAFISLSVFITVVCQITNKNQWPAALQLDWKKATAGFQFWRFLTPFFHFGPLGVNYILTAQFVWTYMNDLEKIGCKEPHDFAIMCVIGGAALIALYGAMGWDPAG---LGHNLACFLVYVWSRVHEGQSVLLFDFFEMKAVLMPWFFALQPMIMEGMIPYPDILGILIGHAYYYLKTKKLLVAPAFIKSIFQH-PILKSKYLVFEEEFG 326
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BLAST of mRNA_H-canaliculatus_F_contig1494.3720.1 vs. uniprot
Match: B7G004_PHATC (Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G004_PHATC)

HSP 1 Score: 189 bits (479), Expect = 5.520e-52
Identity = 106/280 (37.86%), Postives = 163/280 (58.21%), Query Frame = 1 
Query:  145 LNVASRLRGGAAAAGDDTSEXXXS---DESFGXXXXXXXXFEDEDFGEASFVGRLVQDWKKTPVITRTFFQVSVGIAVLAAVLNDNQWPSFLLLDWEPAILKLQLWRLFTPFLYLGPLGLNFMLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGVGSLLLLTLATGADIN--SSYTLGHSLSCFLVMVWSRKFAGSRVNVLEMFELSTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWETLSIKGLLKAPKPLVNLFRNNAFL----RAEYARAGKDY 957
            L+V +  RGGAAA  +D+  XXX    D  FG          + +F E + V R++  W+KTP +T+ +   S    +   + N N++P+ LLLDW+P + KLQ+WRL T FL  GPLGL +++T HF WTYM+ LE+L++  P+ F +++ FG      L++  G  I   S   LGH+LS FLV +WSR   G  VN+ E+F    E+LP+FF+AQT ++EG +P +D  G++ G+ +      G+L+AP  +V  +  ++ L    R+EY     D+
Sbjct:   63 LSVLTDTRGGAAAVFEDSDXXXXXXXXDFLFGMDDADDFDMAESEFAEDNTVDRMIDAWRKTPPLTKGYLSASFAATLYGYLFNRNEFPTVLLLDWKPVLQKLQIWRLLTSFLNFGPLGLGYLMTAHFVWTYMATLERLNHDRPYDFWIMIFFGQ-----LSMVVGYPIFKLSPRFLGHNLSTFLVYIWSRYHEGMEVNMFELFNTRAEMLPWFFLAQTFLLEGELPVLDFLGIVFGHIYHHCKTVGILRAPDVVVEWYNGDSSLARRIRSEYKPISSDF 337
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BLAST of mRNA_H-canaliculatus_F_contig1494.3720.1 vs. uniprot
Match: W7TX70_9STRA (Derlin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX70_9STRA)

HSP 1 Score: 188 bits (477), Expect = 9.200e-51
Identity = 94/227 (41.41%), Postives = 141/227 (62.11%), Query Frame = 1 
Query:  262 DEDFGEASFVGRLVQDWKKTPVITRTFFQVSVGIAVLAAVLNDNQWPSFLLLDWEPAILKLQLWRLFTPFLYLGPLGLNFMLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGVGSLLLLTLATGADINSSYTLGHSLSCFLVMVWSRKFAGSRVNVLEMFELSTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWETLSIKGLLKAPKPLVNLFRNNAFLRAEYAR 942
            +EDF + SF  +L +++++TP +T+ +   S+ +   A + N NQWP +LLLDW   + +LQ+WR FT FLY G  G N++L+ HF WTYM+ LEKL  + P  FV ++ FGV  LL+ +   G      + LGH+LSC+LV VWSR F G  V+V+ +F L   +LP+FFVAQT+++E  +P  DL G+ +G+ +   S + L+K P          AFLR  +A+
Sbjct:  197 EEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQ---PHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPP----------AFLRVFFAQ 410
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BLAST of mRNA_H-canaliculatus_F_contig1494.3720.1 vs. uniprot
Match: A0A7R9VZL8_9STRA (Derlin n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZL8_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.700e-49
Identity = 90/236 (38.14%), Postives = 145/236 (61.44%), Query Frame = 1 
Query:  262 DEDFGEASFVGRLVQDWKKTPVITRTFFQVSVGIAVLAAVLNDNQWPSFLLLDWEPAILKLQLWRLFTPFLYLGPLGLNFMLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGVGSLLLLTLATGADINSSYTLGHSLSCFLVMVWSRKFAGSRVNVLEMFELSTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWETLSIKGLLKAPKPLVNLFRNNA----FLRAEYARAGKDY 957
            ++DFGE   V R +  WKKTP  T+ +   S+    +  V+N NQ+P F LL+W+P + +LQ+WR FT FL  GP GL +++T HF WTYM+ LE+L++  P+ F +++ FG  S+++    T  +I+  + LGH+LS FLV VWSR   G  VN+ E+F    ELLP+FF+AQT ++EG +P +DL G+L G+ +       +++ P+ + + +  ++     +R +Y     D+
Sbjct:  105 EDDFGEDGTVERTIAAWKKTPPFTKAYLTASMAATGVGYVMNKNQFPEFFLLEWKPILTRLQIWRPFTAFLNFGPFGLGYLMTGHFVWTYMATLERLNHDRPYDFWLMIVFGCASMVVGY--TFLNISPRF-LGHNLSTFLVYVWSRYHEGMEVNLFELFNTRAELLPWFFLAQTFLLEGEVPILDLLGILFGHIYHHCKTTNIIRTPRFVTDWYNGDSNSARSIREKYKSISSDF 337
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BLAST of mRNA_H-canaliculatus_F_contig1494.3720.1 vs. uniprot
Match: A0A1Z5JIU9_FISSO (Derlin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIU9_FISSO)

HSP 1 Score: 174 bits (442), Expect = 1.160e-46
Identity = 102/260 (39.23%), Postives = 152/260 (58.46%), Query Frame = 1 
Query:  151 VASRLRGGAAAAGDDTSEXXXSDESFGXXXXXXXXFEDEDFGEASFVGRLVQDWKKTPVITRTFFQVSVGIAVLAAVLNDNQWPSFLLLDWEPAILKLQLWRLFTPFLYLGPLGLNFMLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGVGSLL----LLTLATGADINSSYTLGHSLSCFLVMVWSRKFAGSRVNVLEMFELSTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWETLSIKGLLKAPKPLVNLFRNNA 918
            + ++LRGGA    DD   XXX      XXXX      + DF EA+ + R+++ WK+TP +T+ +   S G  +   + N N++P  L L+W+P + +LQ+WR FT FL  GP GL ++LT  F WTYM+ LE+L++  P  F +L+ FG  S++    LL L       S   LGH+LS +LV +WSR   G  VN+ EMF    ELLP+FF+AQT ++EG  P +D  G++ G+ +      G+L+AP  LV  +  ++
Sbjct:   62 LLNKLRGGALDLSDDEXXXXXXXXXXXXXXXDDFEVAEADFAEANTLDRVLEAWKRTPPLTKAYLTASFGATMYGYLFNKNEFPRILTLEWKPVLQRLQIWRPFTSFLNFGPFGLGYILTAQFVWTYMATLERLNHNRPFDFWILMLFGQLSMVIGYPLLKL-------SPRFLGHNLSTYLVYIWSRYHEGVEVNMFEMFNTKAELLPWFFLAQTFLLEGEPPVLDFLGIVFGHIYHHCKTVGILRAPDALVAWYHGDS 314
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BLAST of mRNA_H-canaliculatus_F_contig1494.3720.1 vs. uniprot
Match: A0A7S1ZWZ3_TRICV (Derlin n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWZ3_TRICV)

HSP 1 Score: 175 bits (443), Expect = 1.730e-46
Identity = 90/235 (38.30%), Postives = 140/235 (59.57%), Query Frame = 1 
Query:  262 DEDFGEASFVGRLVQDWKKTPVITRTFFQVSVGIAVLAAVLNDNQWPSFLLLDWEPAILKLQLWRLFTPFLYLGPLGLNFMLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGVGSLLLLTLATGADINSSYTLGHSLSCFLVMVWSRKFAGSRVNVLEMFELSTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWETLSIKGLLKAPKPLVNLFR---NNAFLRAEYARAGKDY 957
            ++DFGE   + R    W KTP  T+ +   SV   +   +LN N++P  LLLDW+P + ++QLWR  T FL +GP GL + +T HF WTYMS LE+L++  P+ F +++ FG   + ++   T  +I+  + LGH+LS FLV VWSR   G  VN+ E+F    E LP+FF+AQT ++EG +P +DL G+  G+ +      G+++AP+ LV  +    ++  +R  Y     D+
Sbjct:  129 EDDFGEDGTLERASAAWAKTPPFTKMYLSASVAATLWGYLLNKNEFPGVLLLDWKPILTRMQLWRPLTAFLNVGPFGLGYAMTGHFVWTYMSTLERLNHDRPYDFWIMILFGC--VTMVAGYTFLNISPRF-LGHNLSTFLVYVWSRYHEGMEVNMFELFVTRAETLPWFFLAQTFLLEGELPVLDLLGIFFGHIYHHCKTSGIIRAPRALVEWYEKSESSKAIRERYKSISSDF 360
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BLAST of mRNA_H-canaliculatus_F_contig1494.3720.1 vs. uniprot
Match: A0A7S0FH20_9STRA (Derlin n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FH20_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.900e-46
Identity = 91/237 (38.40%), Postives = 141/237 (59.49%), Query Frame = 1 
Query:  271 FGEASFVGRLVQDWKKTPVITRTFFQVSVGIAVLAAVLNDNQWPSFLLLDWEPAILKLQLWRLFTPFLYLGPLGLNFMLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGVGSLLLLTLATGADINSSYT-LGHSLSCFLVMVWSRKFAGSRVNVLEMFELSTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWETLSIKGLLKAPKPLVNLFRNNAF----LRAEYARAGKDYGQE 966
            FGE     RL+  ++KTP  T+ +   S  +A L  + N NQ+P+  LLDW+  + K+Q+WR FT FL +GP GL + +T  F WTYM+ LE++++  P+ F +++ FG  S++    A  + +    T LGH+LS FLV VWSR   G  VN+ E+F    E+LP+ F+AQT ++EGV P +DL G+L G+ +  L     LKAPK ++N +  ++     ++ +Y R   D+  E
Sbjct:  161 FGEGGISERLLAAYEKTPPFTKAYLTASAAVAALGYLTNGNQFPAIFLLDWKSVLTKMQIWRPFTAFLNIGPFGLGYAMTAQFVWTYMATLERMNHSHPYDFWLMIFFGCASMV----AGYSFLKIPPTFLGHNLSTFLVYVWSRYHEGLEVNMFELFTARAEMLPWLFLAQTFLLEGVFPTLDLLGILFGHIYHHLWTTNALKAPKFIINWYNGDSASGKAIKEKYKRISSDFEME 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1494.3720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2R6_ECTSI2.590e-15474.70Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R6_... [more]
A0A7S2Y3M2_9STRA1.350e-5742.74Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
F0YAW8_AURAN1.170e-5241.15Derlin n=1 Tax=Aureococcus anophagefferens TaxID=4... [more]
A0A6V1KE03_HETAK1.860e-5238.32Derlin n=1 Tax=Heterosigma akashiwo TaxID=2829 Rep... [more]
B7G004_PHATC5.520e-5237.86Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=285... [more]
W7TX70_9STRA9.200e-5141.41Derlin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
A0A7R9VZL8_9STRA1.700e-4938.14Derlin n=1 Tax=Pseudictyota dubia TaxID=2749911 Re... [more]
A0A1Z5JIU9_FISSO1.160e-4639.23Derlin n=2 Tax=Fistulifera solaris TaxID=1519565 R... [more]
A0A7S1ZWZ3_TRICV1.730e-4638.30Derlin n=1 Tax=Trieres chinensis TaxID=1514140 Rep... [more]
A0A7S0FH20_9STRA1.900e-4638.40Derlin n=1 Tax=Minutocellus polymorphus TaxID=2655... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1494contigH-canaliculatus_F_contig1494:11437..15327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score458.4
Seed ortholog evalue4.4e-126
Seed eggNOG ortholog2880.D7G2R6
KEGG koko:K13989
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
EggNOG free text desc.ubiquitin-dependent ERAD pathway
EggNOG OGsCOG5291@1,KOG0858@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDerlin (Degradation in endoplasmic reticulum protein ) (Der1-like protein)
Ec32 orthologEc-11_003230.1
Exons6
Model size1502
Cds size1500
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1494.3720.1prot_H-canaliculatus_F_contig1494.3720.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1494 11437..15327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929236.152728-CDS-H-canaliculatus_F_contig1494:11436..120841622929236.152728-CDS-H-canaliculatus_F_contig1494:11436..12084Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 11437..12084 -
1696845729.3493567-CDS-H-canaliculatus_F_contig1494:11436..120841696845729.3493567-CDS-H-canaliculatus_F_contig1494:11436..12084Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 11437..12084 -
1622929236.1708357-CDS-H-canaliculatus_F_contig1494:12464..125961622929236.1708357-CDS-H-canaliculatus_F_contig1494:12464..12596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 12465..12596 -
1696845729.360102-CDS-H-canaliculatus_F_contig1494:12464..125961696845729.360102-CDS-H-canaliculatus_F_contig1494:12464..12596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 12465..12596 -
1622929236.1872714-CDS-H-canaliculatus_F_contig1494:12777..128921622929236.1872714-CDS-H-canaliculatus_F_contig1494:12777..12892Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 12778..12892 -
1696845729.3699923-CDS-H-canaliculatus_F_contig1494:12777..128921696845729.3699923-CDS-H-canaliculatus_F_contig1494:12777..12892Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 12778..12892 -
1622929236.1980128-CDS-H-canaliculatus_F_contig1494:13261..135181622929236.1980128-CDS-H-canaliculatus_F_contig1494:13261..13518Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 13262..13518 -
1696845729.378942-CDS-H-canaliculatus_F_contig1494:13261..135181696845729.378942-CDS-H-canaliculatus_F_contig1494:13261..13518Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 13262..13518 -
1622929236.2152097-CDS-H-canaliculatus_F_contig1494:13926..141211622929236.2152097-CDS-H-canaliculatus_F_contig1494:13926..14121Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 13927..14121 -
1696845729.388823-CDS-H-canaliculatus_F_contig1494:13926..141211696845729.388823-CDS-H-canaliculatus_F_contig1494:13926..14121Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 13927..14121 -
1622929236.2300274-CDS-H-canaliculatus_F_contig1494:15174..153271622929236.2300274-CDS-H-canaliculatus_F_contig1494:15174..15327Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 15175..15327 -
1696845729.4073484-CDS-H-canaliculatus_F_contig1494:15174..153271696845729.4073484-CDS-H-canaliculatus_F_contig1494:15174..15327Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1494 15175..15327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1494.3720.1

>prot_H-canaliculatus_F_contig1494.3720.1 ID=prot_H-canaliculatus_F_contig1494.3720.1|Name=mRNA_H-canaliculatus_F_contig1494.3720.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=500bp
PRLEDGASRDQPQGGGSSLSQRATALRLGGVGQFHLISGGKYCRGAWGLN
VASRLRGGAAAAGDDTSEDEDSDESFGEDDDDEDDFEDEDFGEASFVGRL
VQDWKKTPVITRTFFQVSVGIAVLAAVLNDNQWPSFLLLDWEPAILKLQL
WRLFTPFLYLGPLGLNFMLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGV
GSLLLLTLATGADINSSYTLGHSLSCFLVMVWSRKFAGSRVNVLEMFELS
TELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWETLSIKGLLKAPKPLVN
LFRNNAFLRAEYARAGKDYGQELPPLHDDDDEDAPAPTLDVAATETEEEE
DQTGAGEDKVAAAVAAAAVAERRGKDGGTAQSVDEGEMTEGGGAGRGGGE
RAEPKPVQEEDEEEDDGEEEGESSEGGEEEEDNDSVDGEGEVSDESGEES
WVEESDNGEQAGAEEFEQDTDGEVEAESEEDDFSGSFEQSTEDEDSFDA*
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mRNA from alignment at H-canaliculatus_F_contig1494:11437..15327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1494.3720.1 ID=mRNA_H-canaliculatus_F_contig1494.3720.1|Name=mRNA_H-canaliculatus_F_contig1494.3720.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3891bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1494:11437..15327- (Hapterophycus canaliculatus Oshoro5f female)
CCTAGGCTTGAGGATGGAGCATCGCGGGATCAACCGCAGGGGGGCGGCTC
GAGCCTTTCGCAGCGAGCTACGGCGCTGCGGCTGGGCGGAGTTGGACAAT
TTCACTTGATATCTGGAGGGAAATATTGCAGGGGAGCGTGGGGGCTGAAC
GTGGTGAGTACGGCCGCGACGGAAACCTTTTGCATCCCTCGTTAGTCCGG
GTGCGTCGTTGGATACTCTCGACACATACAGCAGAAGACGTTGATCAGTT
GGGAGCGGTCATGGAGGCGCTCGCGTGTCCTGCGGATACACACGCGATAA
CTGCACACGAGGATAGGAGAGCTGGAGCCACACCCATTATACAGCCTACG
CAGATGGGCTGCGTCTGGCATAGTATCCGCTTGCTGGTATACAACGAGCG
GTGGAATCAAGAGCAAGAGCAAGCAGAGTGCGAGCTCATGATGTTCAGAC
TACAGGCCTTGCAGCGCGAACACGAACGTCGCCAGGGCTTTGCGTCGGCA
AACGATGGGTTGCAACAAACCTGCCGGTGATTCCCATCCAGCGAACTGTA
GATTAGCGATGGAAGCTCTAGGGGTGCCTGCTTCCCCAGATTAGCAACTG
CCTTTCTGTCATGCTTTTGCCTTGCTATATGCCAACGGAGACGGAGAATC
ACAGATACCCTCCACGTGTTCGACGCCCGTGTTCTTCAACCCTCTCGGGT
ACAAATTTGAGTTCACCCGCTCAGTTCGCTTGGACCGCCAGCGGCAATGC
AGACTGCTGTGGTTGTTGTACGAATGCGATTGTGTCATGTTGCTACCATA
AGCGTCTCACACACGTGTAGGATAGGTGTGGGTGCAGCGTGATATGCGCC
GTGTGTGGCATCCTCTCACAATCGAGAAACCTCGAAATCTCCAGGTCTTC
AACTCGTCCGCCCTCGGCGAACGGCATCCTCGTGTCCAACTTATTTCGAC
AAGGGAAACATGCGTGCACATGGTTGAAGGCGGAGTGTGCCTTTTCAAGA
TGCCAATGGCCTACAACTTCGACAAGTACATGTGCGCAGGAAGTCAATCT
TAAACAAAGGAAGCATTGCGATGGACAGACACGGGGACAGCACCCCCCCC
CCCCTCCTACTTGAGGACCAACATTGNCAAAACCCGCGGCACCGCTTCGT
GCGTTCCTGTGCACTTTTTCACATCGTGGGCACTACGGTTTCACGTTGTG
GAGCAGGCAAGCAGGCTTCGAGGCGGGGCAGCAGCGGCGGGCGATGATAC
CTCGGAAGACGAGGATAGCGACGAAAGCTTTGGAGAGGACGACGACGATG
AAGACGACTTCGAAGATGAAGATTTCGGGGAGGCCAGCTTCGTCGGCCGG
CTCGTGCAGGACTGGAAAAAGACCCCCGTCATCACGCGGACCTTTTTCCA
GGTGCCCCCACCAACACATAGCGAAAAAGGGGGTTCGATGTGCATGAAAC
CTTGAGTGAAGCACCGCTGGTCATGGCGAATGACGAGAGTGCGTTATGAT
GGTTTTTATCCAAGTGATGATCCGGGTGGAGGTCGACCAGCGTCTACAAG
TGCAGCATTCCGACGAGCGATTTGACCCCCTGGTATCTAGCCCCTACTCT
ATGACGTTCGTAAGAACTCCGTCTCTCAACAACTTTCGTCCTTTCTTCCT
TTTCGCAAGTAGAAGCTCGAAAAACATATCGCTTTTGGATCCGTTCCTTC
GAAATGTGCGGGTCGCGAAAACTTGAAAACGACTCGTGCACCACCACCGT
AGCTCAAATCGCCCGGCTTCCGTAGCTCAAATCGCCCGGCTTCTCATTTC
GTCTTCCAGGTTAGCGTTGGCATCGCAGTGCTCGCGGCAGTCCTAAACGA
CAATCAATGGCCGAGCTTCCTGCTCCTGGACTGGGAGCCAGCCATCCTCA
AGCTGCAGCTGTGGCGGCTCTTCACTCCGTTCCTCTACCTCGGGCCGCTG
GGTCTAAACTTCATGCTCACCACTCACTTCTCGTGGACGTACATGAGCCA
GCTGGAGAAGCTGCACTACCGGGAACCGCACACCTTCGTCATGCTTCTCG
CTTTTGGCGTAGGGAGGTACGGCACTGTAGACAGCAGCAGCCGCTGGTGT
TCTTGTGCGTGGAGTTGCGGCGGGCGTCTCTCTGCGTCAGATCCGTGCCC
ACTTGGCCTGGCTCGTGTGGACACGGTTTGTGTGGACGCGGAGCGGAAGT
GTGCTACAATTTTACTAGAATCTAGCACGACGACGTTGTGCTGTAGATAG
TTCACAACTCTTGCGGGATACTTTTATGTGGTCGTGGCCCTCTCTTCCCT
TTTTTCGCCCTTTAGCGATTGGTGCAGCATGGACTTTCACGCCAAGGATT
TTTAAGACGGTGTGACCCTACCTCCCACGCGTTTCATCTAAGCTCCTCTT
TCATCCGCGTCGTTATTTTCCGCCTCGAATCACAGTTTGCTCTTGCTAAC
GTTGGCGACGGGCGCCGATATCAATTCGAGCTACACCCTCGGCCACAGCC
TGAGCTGCTTCCTCGTCATGGTCTGGAGCCGCAAGTTTGCGGGCAGCAGG
GTAAGGACAGCGACGATACTAACCTGCCTCCTGTTTTCCACGCGGGCTCT
AGAATTCCTCCGCCTGCGGTCCAATTTGTCTCGGGTAATGTTCTCTAGTT
TTGCTACCTGACAAACACAGTAAGGTGCATGCACGTCCCTCGCCCTTAAT
ATCGCTCCTACACTCTCGGCCATGAAACCAGGTCAACGTGCTGGAAATGT
TCGAGCTGTCGACCGAGCTACTCCCGTACTTCTTCGTCGCGCAGACACTC
ATGATGGAAGGCGTTATCCCTTGGGTTGACCTCAGCGGGCTCCTGATTGG
CTACGCTTGGGAGGTTTGTTCGCGCTTAGCGTGCTCGTGCATGCTTTTCC
TCGTCTGGCGTGTCTAGTCGTTTTCGACAGCTCAAGGAGATTGCACGAAA
CAACTCTGCGGGAATAGGTGGCCTATGCCGACTCCTATGCTCAGCCACTC
GACGTGACCTTGCCTTGACGCAGGACATGCGAATATGCCACGATTCGTAG
CGCTGAAGGAATTCAAGCAGCATGCATGTTCGTCCGGACTATTTTTCTCA
CAAAATTCTTCTACGTGCCTCGTTCGGGCACCCAGCCCCATCACATTTGA
ATAAATCTTATTGATCGATTTTCCCCTCCCTGTTCCTGAAAGATACCATT
CGCTGCCCTGCTTCGCTTCACCGCCCCTGCCTTCCGCCTATAGACTCTAT
CCATCAAGGGACTGCTCAAGGCCCCCAAGCCCCTGGTGAACCTCTTCCGC
AACAACGCCTTCCTGCGTGCCGAGTACGCCCGGGCCGGCAAGGACTACGG
GCAGGAACTGCCGCCGTTGCACGACGACGATGACGAAGACGCCCCAGCGC
CGACGCTCGATGTAGCAGCGACCGAGACCGAGGAAGAGGAGGATCAAACG
GGCGCCGGGGAGGACAAAGTGGCGGCGGCAGTGGCGGCGGCGGCGGTTGC
AGAGCGACGGGGCAAGGATGGCGGCACGGCGCAATCAGTAGACGAGGGAG
AAATGACCGAGGGGGGCGGGGCTGGGCGGGGCGGGGGAGAGAGGGCGGAG
CCGAAGCCAGTGCAAGAAGAGGACGAGGAGGAGGACGATGGCGAAGAAGA
AGGCGAGAGTAGTGAGGGAGGGGAGGAGGAGGAGGATAACGACAGCGTTG
ATGGGGAGGGGGAAGTGAGCGACGAATCGGGGGAGGAAAGCTGGGTCGAG
GAAAGCGACAACGGCGAGCAGGCGGGAGCGGAAGAGTTCGAGCAAGATAC
AGACGGCGAGGTCGAGGCCGAGTCCGAGGAGGACGATTTCTCCGGATCTT
TCGAACAGAGCACGGAGGACGAGGACTCTTTTGATGCCTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1494:11437..15327-

>mRNA_H-canaliculatus_F_contig1494.3720.1 ID=mRNA_H-canaliculatus_F_contig1494.3720.1|Name=mRNA_H-canaliculatus_F_contig1494.3720.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3000bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1494:11437..15327- (Hapterophycus canaliculatus Oshoro5f female)
CCTAGGCTTGAGGATGGAGCATCGCGGGATCAACCGCAGGGGGGCGGCTC
GAGCCTTTCGCAGCGAGCTACGGCGCTGCGGCTGGGCGGAGTTGGACAAT
TTCACTTGATATCTGGAGGGAAATATTGCAGGGGAGCGTGGGGGCTGAAC
GTGCCTAGGCTTGAGGATGGAGCATCGCGGGATCAACCGCAGGGGGGCGG
CTCGAGCCTTTCGCAGCGAGCTACGGCGCTGCGGCTGGGCGGAGTTGGAC
AATTTCACTTGATATCTGGAGGGAAATATTGCAGGGGAGCGTGGGGGCTG
AACGTGGCAAGCAGGCTTCGAGGCGGGGCAGCAGCGGCGGGCGATGATAC
CTCGGAAGACGAGGATAGCGACGAAAGCTTTGGAGAGGACGACGACGATG
AAGACGACTTCGAAGATGAAGATTTCGGGGAGGCCAGCTTCGTCGGCCGG
CTCGTGCAGGACTGGAAAAAGACCCCCGTCATCACGCGGACCTTTTTCCA
GGCAAGCAGGCTTCGAGGCGGGGCAGCAGCGGCGGGCGATGATACCTCGG
AAGACGAGGATAGCGACGAAAGCTTTGGAGAGGACGACGACGATGAAGAC
GACTTCGAAGATGAAGATTTCGGGGAGGCCAGCTTCGTCGGCCGGCTCGT
GCAGGACTGGAAAAAGACCCCCGTCATCACGCGGACCTTTTTCCAGGTTA
GCGTTGGCATCGCAGTGCTCGCGGCAGTCCTAAACGACAATCAATGGCCG
AGCTTCCTGCTCCTGGACTGGGAGCCAGCCATCCTCAAGCTGCAGCTGTG
GCGGCTCTTCACTCCGTTCCTCTACCTCGGGCCGCTGGGTCTAAACTTCA
TGCTCACCACTCACTTCTCGTGGACGTACATGAGCCAGCTGGAGAAGCTG
CACTACCGGGAACCGCACACCTTCGTCATGCTTCTCGCTTTTGGCGTAGG
GAGGTTAGCGTTGGCATCGCAGTGCTCGCGGCAGTCCTAAACGACAATCA
ATGGCCGAGCTTCCTGCTCCTGGACTGGGAGCCAGCCATCCTCAAGCTGC
AGCTGTGGCGGCTCTTCACTCCGTTCCTCTACCTCGGGCCGCTGGGTCTA
AACTTCATGCTCACCACTCACTTCTCGTGGACGTACATGAGCCAGCTGGA
GAAGCTGCACTACCGGGAACCGCACACCTTCGTCATGCTTCTCGCTTTTG
GCGTAGGGAGTTTGCTCTTGCTAACGTTGGCGACGGGCGCCGATATCAAT
TCGAGCTACACCCTCGGCCACAGCCTGAGCTGCTTCCTCGTCATGGTCTG
GAGCCGCAAGTTTGCGGGCAGCAGGTTTGCTCTTGCTAACGTTGGCGACG
GGCGCCGATATCAATTCGAGCTACACCCTCGGCCACAGCCTGAGCTGCTT
CCTCGTCATGGTCTGGAGCCGCAAGTTTGCGGGCAGCAGGGTCAACGTGC
TGGAAATGTTCGAGCTGTCGACCGAGCTACTCCCGTACTTCTTCGTCGCG
CAGACACTCATGATGGAAGGCGTTATCCCTTGGGTTGACCTCAGCGGGCT
CCTGATTGGCTACGCTTGGGAGGTCAACGTGCTGGAAATGTTCGAGCTGT
CGACCGAGCTACTCCCGTACTTCTTCGTCGCGCAGACACTCATGATGGAA
GGCGTTATCCCTTGGGTTGACCTCAGCGGGCTCCTGATTGGCTACGCTTG
GGAGACTCTATCCATCAAGGGACTGCTCAAGGCCCCCAAGCCCCTGGTGA
ACCTCTTCCGCAACAACGCCTTCCTGCGTGCCGAGTACGCCCGGGCCGGC
AAGGACTACGGGCAGGAACTGCCGCCGTTGCACGACGACGATGACGAAGA
CGCCCCAGCGCCGACGCTCGATGTAGCAGCGACCGAGACCGAGGAAGAGG
AGGATCAAACGGGCGCCGGGGAGGACAAAGTGGCGGCGGCAGTGGCGGCG
GCGGCGGTTGCAGAGCGACGGGGCAAGGATGGCGGCACGGCGCAATCAGT
AGACGAGGGAGAAATGACCGAGGGGGGCGGGGCTGGGCGGGGCGGGGGAG
AGAGGGCGGAGCCGAAGCCAGTGCAAGAAGAGGACGAGGAGGAGGACGAT
GGCGAAGAAGAAGGCGAGAGTAGTGAGGGAGGGGAGGAGGAGGAGGATAA
CGACAGCGTTGATGGGGAGGGGGAAGTGAGCGACGAATCGGGGGAGGAAA
GCTGGGTCGAGGAAAGCGACAACGGCGAGCAGGCGGGAGCGGAAGAGTTC
GAGCAAGATACAGACGGCGAGGTCGAGGCCGAGTCCGAGGAGGACGATTT
CTCCGGATCTTTCGAACAGAGCACGGAGGACGAGGACTCTTTTGATGCCT
AAACTCTATCCATCAAGGGACTGCTCAAGGCCCCCAAGCCCCTGGTGAAC
CTCTTCCGCAACAACGCCTTCCTGCGTGCCGAGTACGCCCGGGCCGGCAA
GGACTACGGGCAGGAACTGCCGCCGTTGCACGACGACGATGACGAAGACG
CCCCAGCGCCGACGCTCGATGTAGCAGCGACCGAGACCGAGGAAGAGGAG
GATCAAACGGGCGCCGGGGAGGACAAAGTGGCGGCGGCAGTGGCGGCGGC
GGCGGTTGCAGAGCGACGGGGCAAGGATGGCGGCACGGCGCAATCAGTAG
ACGAGGGAGAAATGACCGAGGGGGGCGGGGCTGGGCGGGGCGGGGGAGAG
AGGGCGGAGCCGAAGCCAGTGCAAGAAGAGGACGAGGAGGAGGACGATGG
CGAAGAAGAAGGCGAGAGTAGTGAGGGAGGGGAGGAGGAGGAGGATAACG
ACAGCGTTGATGGGGAGGGGGAAGTGAGCGACGAATCGGGGGAGGAAAGC
TGGGTCGAGGAAAGCGACAACGGCGAGCAGGCGGGAGCGGAAGAGTTCGA
GCAAGATACAGACGGCGAGGTCGAGGCCGAGTCCGAGGAGGACGATTTCT
CCGGATCTTTCGAACAGAGCACGGAGGACGAGGACTCTTTTGATGCCTAA
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