mRNA_H-canaliculatus_F_contig14932.3716.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14932.3716.1
Unique NamemRNA_H-canaliculatus_F_contig14932.3716.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14932.3716.1 vs. uniprot
Match: D7FT71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT71_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 4.780e-28
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 3 
Query:  648 QVPTAEDIMKCGIALPNVQSSSDHIMLLCDIQLGGGTGHAGQAQPPASPIFQGQQK 815
            QVPTAEDIMKCGIALPNVQSSSDHIMLLCD+QLGG TGH+GQAQPPASPIFQGQQK
Sbjct:    7 QVPTAEDIMKCGIALPNVQSSSDHIMLLCDVQLGGATGHSGQAQPPASPIFQGQQK 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14932.3716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT71_ECTSI4.780e-2894.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14932contigH-canaliculatus_F_contig14932:369..1183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_003380.1
Exons1
Model size815
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929235.6767697-UTR-H-canaliculatus_F_contig14932:368..7931622929235.6767697-UTR-H-canaliculatus_F_contig14932:368..793Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14932 369..793 +
1696845729.1492558-UTR-H-canaliculatus_F_contig14932:368..7931696845729.1492558-UTR-H-canaliculatus_F_contig14932:368..793Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14932 369..793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929235.7399483-CDS-H-canaliculatus_F_contig14932:793..11831622929235.7399483-CDS-H-canaliculatus_F_contig14932:793..1183Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14932 794..1183 +
1696845729.1595237-CDS-H-canaliculatus_F_contig14932:793..11831696845729.1595237-CDS-H-canaliculatus_F_contig14932:793..1183Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14932 794..1183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14932.3716.1prot_H-canaliculatus_F_contig14932.3716.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14932 794..1183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14932.3716.1

>prot_H-canaliculatus_F_contig14932.3716.1 ID=prot_H-canaliculatus_F_contig14932.3716.1|Name=mRNA_H-canaliculatus_F_contig14932.3716.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=130bp
MYESRPARRTRATLSRNATRPSRAAFQAERQSPSVRPTPSFAFFVARRAP
LSRKQTNRRRRQHPRHPPTRPRRRQVPTAEDIMKCGIALPNVQSSSDHIM
LLCDIQLGGGTGHAGQAQPPASPIFQGQQK
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mRNA from alignment at H-canaliculatus_F_contig14932:369..1183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14932.3716.1 ID=mRNA_H-canaliculatus_F_contig14932.3716.1|Name=mRNA_H-canaliculatus_F_contig14932.3716.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=815bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14932:369..1183+ (Hapterophycus canaliculatus Oshoro5f female)
GTCATGTCATGTCATCAAGAGCTTTCCGAAATCGTGTTGTATGGTCTTGA
CACCGTGCTCTGTTGCGGAGTAGTCGAGCTATCCAAATCGGTCCAGGGGG
TGTGTTATCTTGTGTAGTGTACGGCGTCGGCGTGCTACTGCCCTGTCCAC
TCCTCGGCTTTACCGGGACCGGTTGCCGTCGATCCCCTTGCTTCGTACGT
TAGCGTCGCACCCGTCCGATAAGATCAGACAGACCTGGGGAAGGCCCAAA
CAATGTTTCCATATTTTCCTCATCAAAGCCTTCAATAACACGATACCTCT
GATACACTTCTCGTGATGTTTTCAATCCGGCCGATTCGAATCCTTCCCTC
ACAGCCTTGTACTTCTCTTGATGTTTGTGCCCCGTCCAACACGAATTGCA
TCCTCACAGCCTTGCGCCTTTGTTGATGTATGAATCACGTCCAGCGCGCC
GAACCCGTGCTACACTATCGAGGAATGCAACGCGGCCCTCCAGAGCCGCG
TTTCAGGCTGAGAGGCAAAGCCCTTCCGTGCGGCCGACCCCCTCTTTCGC
CTTTTTTGTTGCAAGACGAGCCCCCTTGTCCCGAAAACAAACAAACCGAC
GCCGACGCCAACATCCGCGGCACCCGCCCACCCGCCCTCGACGACGACAG
GTGCCGACGGCGGAGGACATCATGAAGTGCGGCATCGCCTTGCCCAACGT
GCAGTCCTCCTCGGACCACATCATGCTCCTCTGCGACATACAGCTCGGCG
GGGGCACGGGCCACGCGGGACAAGCGCAGCCGCCGGCGTCTCCCATCTTC
CAGGGGCAGCAGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14932:369..1183+

>mRNA_H-canaliculatus_F_contig14932.3716.1 ID=mRNA_H-canaliculatus_F_contig14932.3716.1|Name=mRNA_H-canaliculatus_F_contig14932.3716.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=780bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14932:369..1183+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTATGAATCACGTCCAGCGCGCCGAACCCGTGCTACACTATCGAGGAA
TGCAACGCGGCCCTCCAGAGCCGCGTTTCAGGCTGAGAGGCAAAGCCCTT
CCGTGCGGCCGACCCCCTCTTTCGCCTTTTTTGTTGCAAGACGAGCCCCC
TTGTCCCGAAAACAAACAAACCGACGCCGACGCCAACATCCGCGGCACCC
GCCCACCCGCCCTCGACGACGACAGGTGCCGACGGCGGAGGACATCATGA
AGTGCGGCATCGCCTTGCCCAACGTGCAGTCCTCCTCGGACCACATCATG
CTCCTCTGCGACATACAGCTCGGCGGGGGCACGGGCCACGCGGGACAAGC
GCAGCCGCCGGCGTCTCCCATCTTCCAGGGGCAGCAGAAGATGTATGAAT
CACGTCCAGCGCGCCGAACCCGTGCTACACTATCGAGGAATGCAACGCGG
CCCTCCAGAGCCGCGTTTCAGGCTGAGAGGCAAAGCCCTTCCGTGCGGCC
GACCCCCTCTTTCGCCTTTTTTGTTGCAAGACGAGCCCCCTTGTCCCGAA
AACAAACAAACCGACGCCGACGCCAACATCCGCGGCACCCGCCCACCCGC
CCTCGACGACGACAGGTGCCGACGGCGGAGGACATCATGAAGTGCGGCAT
CGCCTTGCCCAACGTGCAGTCCTCCTCGGACCACATCATGCTCCTCTGCG
ACATACAGCTCGGCGGGGGCACGGGCCACGCGGGACAAGCGCAGCCGCCG
GCGTCTCCCATCTTCCAGGGGCAGCAGAAG
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