mRNA_H-canaliculatus_F_contig14931.3715.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14931.3715.1
Unique NamemRNA_H-canaliculatus_F_contig14931.3715.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14931.3715.1 vs. uniprot
Match: D8LSG0_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG0_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 3.830e-36
Identity = 74/107 (69.16%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:   16 PSWLGALVGLEMAEFAGTRAARAAVLMREVRDMEAKELSVLRRLHKVEPEVSLQDYSAFRGVSLRSAV-AYTDLETLQQQYLQRQPEAHEQELADLAINGSFISNLL 333
            P+WLG LVGL M EFAGT AARA+V++RE RDMEAKEL+VL+RL K++PEV+L DY+AFRG  LRS+  AY  LE LQ QYL+R PE H+QELADLA+NGSF+S+LL
Sbjct:  446 PAWLGVLVGLGMPEFAGTGAARASVVVREARDMEAKELAVLQRLQKLKPEVTLDDYTAFRGAGLRSSSPAYASLEALQGQYLRRPPEDHQQELADLAMNGSFVSDLL 552
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14931.3715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSG0_ECTSI3.830e-3669.16PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14931contigH-canaliculatus_F_contig14931:130..883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929235.6189904-CDS-H-canaliculatus_F_contig14931:129..2821622929235.6189904-CDS-H-canaliculatus_F_contig14931:129..282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14931 130..282 +
1696845729.1300375-CDS-H-canaliculatus_F_contig14931:129..2821696845729.1300375-CDS-H-canaliculatus_F_contig14931:129..282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14931 130..282 +
1622929235.6324565-CDS-H-canaliculatus_F_contig14931:703..8831622929235.6324565-CDS-H-canaliculatus_F_contig14931:703..883Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14931 704..883 +
1696845729.1386938-CDS-H-canaliculatus_F_contig14931:703..8831696845729.1386938-CDS-H-canaliculatus_F_contig14931:703..883Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14931 704..883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14931.3715.1prot_H-canaliculatus_F_contig14931.3715.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14931 130..883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14931.3715.1

>prot_H-canaliculatus_F_contig14931.3715.1 ID=prot_H-canaliculatus_F_contig14931.3715.1|Name=mRNA_H-canaliculatus_F_contig14931.3715.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=111bp
APPSPPSWLGALVGLEMAEFAGTRAARAAVLMREVRDMEAKELSVLRRLH
KVEPEVSLQDYSAFRGVSLRSAVAYTDLETLQQQYLQRQPEAHEQELADL
AINGSFISNLL
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mRNA from alignment at H-canaliculatus_F_contig14931:130..883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14931.3715.1 ID=mRNA_H-canaliculatus_F_contig14931.3715.1|Name=mRNA_H-canaliculatus_F_contig14931.3715.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=754bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14931:130..883+ (Hapterophycus canaliculatus Oshoro5f female)
GCGCCACCGTCGCCGCCGTCTTGGCTTGGTGCGCTGGTTGGGCTCGAGAT
GGCGGAGTTTGCGGGGACGAGGGCGGCTCGCGCGGCGGTTTTGATGAGAG
AAGTGAGGGATATGGAGGCCAAGGAGCTGTCTGTCCTCAGGCGGTTGCAC
AAGGTGGGTGTGGCCGGGCCGATCGGCCGCTCCTCCGGGGATTGTGGGGG
GGGGGTCGGGGCGGAAATTTGCACCGCAAGACCTTGACCGTGGGGGGAAG
GGGGGGGGGAATTGCCAGGCGGTAGGGGTCCAACTCGGACCGCTGCAGCT
TTGTCTCTTGTTTTGCAGAGCGACGCTGTGGTGATGGTACGGTGAAGAGA
TGGATTGCTTCGCCGTAGGCGTCGAGGCTTCCTGCCACACTCCACGTGGT
TTCATGTCTCCCTTCTGCGGTGTCTTTGTTTCTGCTGCGCTTCCCTCGCG
CCGCGCCAAAGTGTGCAGCCAAGTAAGGTTCTGAAACGCCACCTGTACCG
CAAGTGTCTTGACCCTGCCCTGTGTCGAGGTTGCTGATGTTGTCCGACAT
CGTCCTTGGTCTCGGTTTGTCAAGGTGGAACCGGAGGTGTCGCTCCAGGA
TTATTCTGCCTTCCGCGGCGTCAGCCTCCGGTCGGCGGTAGCCTATACCG
ACCTCGAGACGCTCCAGCAGCAGTACCTCCAACGGCAGCCCGAGGCCCAT
GAGCAAGAGCTGGCCGATCTCGCGATCAACGGCTCCTTTATTTCGAATCT
CCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14931:130..883+

>mRNA_H-canaliculatus_F_contig14931.3715.1 ID=mRNA_H-canaliculatus_F_contig14931.3715.1|Name=mRNA_H-canaliculatus_F_contig14931.3715.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14931:130..883+ (Hapterophycus canaliculatus Oshoro5f female)
GCGCCACCGTCGCCGCCGTCTTGGCTTGGTGCGCTGGTTGGGCTCGAGAT
GGCGGAGTTTGCGGGGACGAGGGCGGCTCGCGCGGCGGTTTTGATGAGAG
AAGTGAGGGATATGGAGGCCAAGGAGCTGTCTGTCCTCAGGCGGTTGCAC
AAGGCGCCACCGTCGCCGCCGTCTTGGCTTGGTGCGCTGGTTGGGCTCGA
GATGGCGGAGTTTGCGGGGACGAGGGCGGCTCGCGCGGCGGTTTTGATGA
GAGAAGTGAGGGATATGGAGGCCAAGGAGCTGTCTGTCCTCAGGCGGTTG
CACAAGGTGGAACCGGAGGTGTCGCTCCAGGATTATTCTGCCTTCCGCGG
CGTCAGCCTCCGGTCGGCGGTAGCCTATACCGACCTCGAGACGCTCCAGC
AGCAGTACCTCCAACGGCAGCCCGAGGCCCATGAGCAAGAGCTGGCCGAT
CTCGCGATCAACGGCTCCTTTATTTCGAATCTCCTCGTGGAACCGGAGGT
GTCGCTCCAGGATTATTCTGCCTTCCGCGGCGTCAGCCTCCGGTCGGCGG
TAGCCTATACCGACCTCGAGACGCTCCAGCAGCAGTACCTCCAACGGCAG
CCCGAGGCCCATGAGCAAGAGCTGGCCGATCTCGCGATCAACGGCTCCTT
TATTTCGAATCTCCTC
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