mRNA_H-canaliculatus_F_contig1492.3711.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1492.3711.1
Unique NamemRNA_H-canaliculatus_F_contig1492.3711.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1492.3711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1492contigH-canaliculatus_F_contig1492:9094..11708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size303
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1492.3711.1prot_H-canaliculatus_F_contig1492.3711.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1492 9094..11708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.9870064-CDS-H-canaliculatus_F_contig1492:9093..93051622929233.9870064-CDS-H-canaliculatus_F_contig1492:9093..9305Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1492 9094..9305 -
1696845728.6535754-CDS-H-canaliculatus_F_contig1492:9093..93051696845728.6535754-CDS-H-canaliculatus_F_contig1492:9093..9305Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1492 9094..9305 -
1622929234.0401134-CDS-H-canaliculatus_F_contig1492:11186..112231622929234.0401134-CDS-H-canaliculatus_F_contig1492:11186..11223Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1492 11187..11223 -
1696845728.6624198-CDS-H-canaliculatus_F_contig1492:11186..112231696845728.6624198-CDS-H-canaliculatus_F_contig1492:11186..11223Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1492 11187..11223 -
1622929234.0577803-CDS-H-canaliculatus_F_contig1492:11654..117081622929234.0577803-CDS-H-canaliculatus_F_contig1492:11654..11708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1492 11655..11708 -
1696845728.671685-CDS-H-canaliculatus_F_contig1492:11654..117081696845728.671685-CDS-H-canaliculatus_F_contig1492:11654..11708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1492 11655..11708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1492.3711.1

>prot_H-canaliculatus_F_contig1492.3711.1 ID=prot_H-canaliculatus_F_contig1492.3711.1|Name=mRNA_H-canaliculatus_F_contig1492.3711.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
MARWTCILLLSSVISEILAQAGLVSGFSSGALPQTGFLCALRPSRAVGGT
PRQLGRQLKPPSLSSPSPPPPSGENYCRGRGGSVLGLGTTLRASGVGWVA
A
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mRNA from alignment at H-canaliculatus_F_contig1492:9094..11708-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1492.3711.1 ID=mRNA_H-canaliculatus_F_contig1492.3711.1|Name=mRNA_H-canaliculatus_F_contig1492.3711.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2615bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1492:9094..11708- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGAGATGGACGTGTATCTTGCTGTTGAGTAGTGTCATCTCCGAGAT
CCTGGTGAGAATTGACGAGGGAAGAAGGGGTAGCAGTTCACAGGTAGCAC
AGACTTCACGCGCAGACGGAAAACGAAGCAAGCCGGCTTCATGTTCCCGC
GGGTTGCAGCGTGGTGACACCTGTCAACAACTCGATCTACGAGTCTTCTC
GTCCTGAGCAACTGCAAGCCGTGCCCTCAGCACCAGTGCAATTCCGAATA
TCTCGTGGGATGCGGGCTGCCCAGCTGGCGGGTGATGCAGTGCACCGGAC
GCGAAAACAATCCTAACTGATGCTGCTTTTCGCCGCTGTAGCACACACAC
CCGCCGCAATCTTGAAGCTCGCTTTGTCCAACAGCCATCCGTGTGTCTGT
CGGCGACCCTCGTTTCTCTCGACGCTACGCCTACTGACTTGTGGCCTTGC
TCCGCGATGTCTGGTCTTTCGGCTCCGATCCACAGGCACAGGCGGGGTTG
GTATCAGGTTTCTCATCTGGAGGTAAGCCCCTTTGGACGGATTTGTTTTT
GTGCCGCTTTTTCCTCGCCCTCTCGACTCAAGGTACATCAGCTGTAGAGT
CTGTGGACTTTACGTCGATTGTTCGAAGATCTGATGATATGCGATCCTTC
GACGCGCCAGCCCCGTATTGCGGAGATTTCTCCCGGGCGCTATTCTTATC
CAAGGTTGAGATGTATTGGGAGCCCACAAAAAGGCTTGCGGATGCCGGGG
GGGCACTGCAGTTGCACACGTTTTCGTCGTCGTCGAGGGGAGGTTGAATA
AACAAGCCCGTCGGGCTTGCCTGCCATCACCAGCACCTTAGCGGAATCTA
CACGTCGAGTGACCCCTTGAGTAAAATGGTGTCCACCAAGACGGGCGGGT
CGCGCTAGAATAAAGCACGTGACCCGCCGCTGTCAGACTTTCATCCACGC
ACCGTTCGGCAAGCAGTAGGCAGAGGCGCCCAAGCCCAAATCAGATGCGC
CCGTTGCGCGTGATACTTGTGTAAACCCCCGTCAAGTGAGGGGGAGATTG
AAAGTACTTAACGCTATTTTCGCGGTTTGCGAACTTGGCGAGGATGTCGG
GGTAGGTAAGGTCTGCTCAGTAGACCAAGGTCACGAGGCGTGCGGGGTGT
TTCGCCAGAAGGCCCCAGAGTTTATCCCCCCTGTGGTGCGCCCAGAATCG
AAGAGAGGGAAGACTGCTGTGTGTCAAAGCCATCTAGCTGCTTTTTGCTC
GCTGCCAGTGTGATCGACACTACGGAGCAGACGAGGCCAAGATACTACCG
CTGCACAACCTCACGATCCCTGCCAATTCTGTTCTGTAGACGATCTCCGC
TAGGGTACTAGAGATAAGAGAAAAATATTTGTGGCAGCAATGGTCCGTAC
AGGTCTTCATTTGCTTGCTTGCTTGGTACGCACACTGATTGAGTATGTAT
CCCTTCGCTCGGCGATCGGGTTAAACCTAGCAAGCAAAAACAGCCGTAAC
TGGGTCTTTGGTAACTCGCAACAGATCTGGAACACTCTTGAACGTTGTGG
CAATGCTACACAGCAGAAATGCACGAGTGAGTGATATAGTCGACCGAAAA
GCTATCCCGAAGGGTCGTGGACTGTCGGCGGCTGTTGTTCCCGGGTTTGT
CGGACATATGGTGTTCTTCGTGCGACAAGCCGGCGTGTTTTTGTGAGTCT
CCTCGCCCTGTAGTTCAAACGTGGACCAGAGATGGAATCCTGGGAAGCTA
CATACCACCAACCTAATTCATTGTTTCGCGGTCGACGGAGACTGTGTAAA
GTTGGGGAAAACAGTACGGCGTCGCGGATATATCTGCGCCTCGCCCTACA
GGGGGTCGCTTAGTCTTGCTTGCTCTTGGAGCGCCAGATACTATGCAAGT
CTCCCTGTTTTTGAGAGCTTCACCGGAGCACGTGCTTTCTCTTCAGGCCT
CTCAGATGCACGTCAAAGGTGTGGCTGAACCACTAGCCACCACGCGTTGG
ATTGCTTCAGAGCAGCGCCTTCTGGCGGAAGACCCCCCGTCGAAATATCC
GCACCTCCGGCCGGTCCGGTTGACTGGGGCGGACGCACATTGCGTCCCAT
GTTATCTCGTACACTCTAGAAAATTGACGGGACGTACGTTTTTCTTCCTA
CGTTGGGGCAGGAACGCACGTGCGTCCCTACCTGCTCCCTCCGTAAGCAC
GTCTTCTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTCTGTGTGTC
TGCTCGTGTTCCGTGTGAGGGCACCCCGTTCTCGGTGCATAGGTTTACGC
CTGCGCTGTACCAAGTACTTTGATGCTCTCAGCTGGAGGCAAAATCAGGA
GGAAGGCCAACACCGAGTTTTCCTTTGTGCTGTTCGTGTGCGCTGGCTTC
CAGCGCTCCCGCAGACAGGTTTTCTTTGCGCCCTGCGCCCTTCGCGCGCG
GTTGGCGGCACTCCCCGTCAGCTCGGACGGCAGCTCAAACCTCCCTCCTT
GTCATCGCCGTCGCCACCGCCACCTTCAGGAGAAAACTATTGTCGCGGCC
GGGGGGGATCGGTCTTGGGGTTGGGGACGACCCTGCGGGCATCGGGGGTA
GGATGGGTGGCAGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1492:9094..11708-

>mRNA_H-canaliculatus_F_contig1492.3711.1 ID=mRNA_H-canaliculatus_F_contig1492.3711.1|Name=mRNA_H-canaliculatus_F_contig1492.3711.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1492:9094..11708- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGAGATGGACGTGTATCTTGCTGTTGAGTAGTGTCATCTCCGAGAT
CCTGATGGCGAGATGGACGTGTATCTTGCTGTTGAGTAGTGTCATCTCCG
AGATCCTGGCACAGGCGGGGTTGGTATCAGGTTTCTCATCTGGAGGCACA
GGCGGGGTTGGTATCAGGTTTCTCATCTGGAGCGCTCCCGCAGACAGGTT
TTCTTTGCGCCCTGCGCCCTTCGCGCGCGGTTGGCGGCACTCCCCGTCAG
CTCGGACGGCAGCTCAAACCTCCCTCCTTGTCATCGCCGTCGCCACCGCC
ACCTTCAGGAGAAAACTATTGTCGCGGCCGGGGGGGATCGGTCTTGGGGT
TGGGGACGACCCTGCGGGCATCGGGGGTAGGATGGGTGGCAGCGCGCTCC
CGCAGACAGGTTTTCTTTGCGCCCTGCGCCCTTCGCGCGCGGTTGGCGGC
ACTCCCCGTCAGCTCGGACGGCAGCTCAAACCTCCCTCCTTGTCATCGCC
GTCGCCACCGCCACCTTCAGGAGAAAACTATTGTCGCGGCCGGGGGGGAT
CGGTCTTGGGGTTGGGGACGACCCTGCGGGCATCGGGGGTAGGATGGGTG
GCAGCG
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