mRNA_H-canaliculatus_F_contig14909.3707.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14909.3707.1
Unique NamemRNA_H-canaliculatus_F_contig14909.3707.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14909.3707.1 vs. uniprot
Match: A0A6H5JEB8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB8_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.360e-25
Identity = 146/203 (71.92%), Postives = 155/203 (76.35%), Query Frame = 1 
Query:  208 PVESGIRRLLLTGNPRLGDAGARALAAALKKDRSLEVLDLTRCKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLHAGSSALESLELQGNHVGDDGAVALANGLAGHGAWGGKRGGRRDVRRAR-----REGXXXXXXXXXXXXXXXXXXXXXXXXXXSGGGGRXXXXXXXXXXXXGEIVLEELELAGNPVSL 801
            P  SGIRRLLLTGN R+GDAGA+ALA+ALKKD SL+VLDLTRCK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LLHAGSSALE LELQGNHVGD GAVALA+GL G    G KRGGR     A+     R G      XXXXXXXXXXXXXXXXXXXX   GG X           G +VLEELELAGN ++L
Sbjct:  298 PAASGIRRLLLTGNDRIGDAGAKALASALKKDSSLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHAGSSALECLELQGNHVGDAGAVALADGLVG----GSKRGGRXXXXXAKQGSSSRRGPGLRSLXXXXXXXXXXXXXXXXXXXXXXKGGXX-----------GGVVLEELELAGNALTL 485
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BLAST of mRNA_H-canaliculatus_F_contig14909.3707.1 vs. uniprot
Match: D8LLY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY3_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.840e-24
Identity = 108/128 (84.38%), Postives = 112/128 (87.50%), Query Frame = 1 
Query:  208 PVESGIRRLLLTGNPRLGDAGARALAAALKKDRSLEVLDLTRCKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLHAGSSALESLELQGNHVGDDGAVALANGLAGHGAWGGKRGGRR 591
            PV SGIRRLLLTGN RLGDAGA+ALA+ALKKD SL+VLDLTRCK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   HAGSSALE LELQGNHVGD GAVALA+GL G    G  RGGRR
Sbjct:  247 PVASGIRRLLLTGNDRLGDAGAKALASALKKDNSLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAGSSALECLELQGNHVGDAGAVALADGLVG----GNNRGGRR 370
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BLAST of mRNA_H-canaliculatus_F_contig14909.3707.1 vs. uniprot
Match: A0A835Z931_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z931_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.800e-8
Identity = 79/113 (69.91%), Postives = 91/113 (80.53%), Query Frame = 1 
Query:  214 ESGIRRLLLTGNPRLGDAGARALAAALKKDRSLEVLDLTRCKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLHAGSSALESLELQGNHVGDDGAVALANGLA 552
            + GIR L L GNP LGDAGA+ALAAALK++ +LE LDLTRC  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  L  G+S+++ L+L  NH+ D GA A A  L+
Sbjct:  201 DRGIRHLSLAGNP-LGDAGAKALAAALKQNVALEELDLTRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRDGASSIQRLDLDHNHIADGGAFAFARALS 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14909.3707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JEB8_9PHAE1.360e-2571.92Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LLY3_ECTSI1.840e-2484.38Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835Z931_9STRA8.800e-869.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14909contigH-canaliculatus_F_contig14909:443..2458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue2.4e-22
Seed eggNOG ortholog2880.D8LLY3
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-14_002100.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size801
Cds size801
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14909.3707.1prot_H-canaliculatus_F_contig14909.3707.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14909 443..2458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.588167-CDS-H-canaliculatus_F_contig14909:442..8361622929233.588167-CDS-H-canaliculatus_F_contig14909:442..836Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14909 443..836 -
1696845728.5575058-CDS-H-canaliculatus_F_contig14909:442..8361696845728.5575058-CDS-H-canaliculatus_F_contig14909:442..836Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14909 443..836 -
1622929233.6080446-CDS-H-canaliculatus_F_contig14909:1610..16851622929233.6080446-CDS-H-canaliculatus_F_contig14909:1610..1685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14909 1611..1685 -
1696845728.5689838-CDS-H-canaliculatus_F_contig14909:1610..16851696845728.5689838-CDS-H-canaliculatus_F_contig14909:1610..1685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14909 1611..1685 -
1622929233.6268144-CDS-H-canaliculatus_F_contig14909:2126..24581622929233.6268144-CDS-H-canaliculatus_F_contig14909:2126..2458Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14909 2127..2458 -
1696845728.579196-CDS-H-canaliculatus_F_contig14909:2126..24581696845728.579196-CDS-H-canaliculatus_F_contig14909:2126..2458Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14909 2127..2458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14909.3707.1

>prot_H-canaliculatus_F_contig14909.3707.1 ID=prot_H-canaliculatus_F_contig14909.3707.1|Name=mRNA_H-canaliculatus_F_contig14909.3707.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=267bp
YLSSALAKAATAALTASETSAKTPRSGKLDGGSGNKADSKLFDGSEASAT
ATAGQGETGDDAGSTPPPPPVESGIRRLLLTGNPRLGDAGARALAAALKK
DRSLEVLDLTRCKIGDDGVRCLAEALRSNSCLRELRLGYNDISADGASAL
ASLLHAGSSALESLELQGNHVGDDGAVALANGLAGHGAWGGKRGGRRDVR
RARREGSGGLRSLNLAGNGIGCAGGVALAEALSGGGGRGRGGRGRGGGGG
GEIVLEELELAGNPVSL
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mRNA from alignment at H-canaliculatus_F_contig14909:443..2458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14909.3707.1 ID=mRNA_H-canaliculatus_F_contig14909.3707.1|Name=mRNA_H-canaliculatus_F_contig14909.3707.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2016bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14909:443..2458- (Hapterophycus canaliculatus Oshoro5f female)
TACCTGTCCTCCGCGCTCGCTAAGGCAGCGACTGCCGCTCTCACCGCCAG
CGAAACTTCCGCGAAAACTCCTCGAAGCGGCAAGCTCGACGGCGGCAGCG
GCAACAAGGCCGACAGCAAACTCTTCGACGGCAGCGAGGCCTCCGCCACC
GCTACGGCGGGCCAGGGGGAGACCGGGGACGATGCAGGGTCCACCCCGCC
TCCTCCCCCGGTAGAGTCCGGGATCCGGCGGCTGCTTCTGACCGGCAATC
CTCGCCTCGGCGACGCGGGTGCGAGAGCGCTAGCGGCCGCGCTGAAGAAG
GACCGCTCTCTCGAGGTCCTGGACCTCACCAGGTGCGGCGATGTGGTGGA
CCGTGGACGGCGGCGCAGGGCGTCGACTGCAATGCGCGAATGTGTTCGTT
CGCAACAAACGAGGAGGACTTTTTTTCGCCGTCGGTCGTGTGCTGCGCGC
GTGTGCATGTTGCATGTTCAAATCCCACGCAGCCCCGCATTCAACTTGGA
ACCAACTCAATTGGTTGAATGTCTCCCAAGACCAGCGGAAAAACGTCTCC
TGTTGGTGCGCGTACCTTTTTGATCGTCTTTTCACCGTCTGTCTCTTTTT
TTCGTTTTTTTTTGTCCTCGTGGGACTTTGGACGCTCCTCGCTGCTGGCC
CTCGCTCTCGGCGCGGGGCGGGGCGGACGCGTACAACGCACGGGACGTCG
CACGCGTGCCCTCTCTTCCCCCTCCGATGGCGCAAAAAACGGCGGCGTCT
TTCCCACGGATGACGGCCGGCAGGTGTAAAATCGGCGACGACGGCGTGCG
ATGCCTGGCCGAGGCTCTGAGGTCCAACTCGTGCCTTCGCGAGCTCAGGT
GAGCGGTGATCTTCCGTTTTTTGTTGTAGTTGTTTCCCAAGTATTTCCCT
GTATCTTGCTCGACCGACGTCCTTATGGTGCTGATGTGCTCCCCCCCAAC
CCGTTCGCACGGTGGTGATTAGGTTGGCTTACGTCTCGTCGAGGGAGGTA
TGGAACTGTCTGCACCTTGAGGGGCGGCGTGTTTATCAGTCTTATGTTGG
CTGCGCCCTTCCGGGGGTGCATTCTAGCGGTGGGGCTCCGAATTCCTTCC
GCACAGGTCTTGTCTCTGCCTCTCCTTGTCCTACCGCTGGGGTTGGTCGC
GAACGTTTGGCGATGGCGCGGCCGATGCGTCGTGGCTGTGTGTCGTCGGC
CGCTCGCTGGTGGGAGTTGTAATGCTTCGGATGCCTTGGCTTGACCGCGA
TCCCCTCTCGGTGCCGCGCACAAGCTTACCTCGTGTCAGTGTGCGCGCAA
TCGCTCAGCAATGGTTTCTTTTCGTCGGGGGCTATGATCTTGGTCTGCGG
AGTCATCGGGCCGTCGGCGAATTTCCCGAGCTTCTTGTCGTTGCTGCTCC
GTCCACACGAAAATCGCCGTCCGCGAAAACCGTTTCGCCACGAAGGTGCC
GTCCGGCTACGAATAGGTCAACGACCTGCCTTCTCCTTGTTGATCCACGT
GCTTCGTGCTCCGCACCCGGCGATCTCGTACCATGGCCAACGGTGTTTAC
GTGTCCTCGTTTTTTCTGCCACCACGCCACCACCCCACGCCCTCGGCGCG
CGCCCGCGTCTCCAACCCAAAGGCTTGGATACAACGACATCTCTGCGGAC
GGGGCCTCCGCCCTCGCCTCCCTCCTGCACGCCGGCTCGAGCGCCTTGGA
GTCTCTCGAGCTCCAGGGTAACCACGTCGGCGACGACGGCGCCGTCGCCC
TGGCTAACGGCCTGGCCGGCCACGGGGCTTGGGGAGGCAAGCGCGGCGGC
CGGAGGGATGTTAGACGGGCAAGGCGAGAGGGGTCCGGGGGTCTGCGGTC
GCTGAATCTGGCGGGGAACGGTATCGGGTGCGCCGGAGGGGTGGCGCTCG
CGGAGGCGTTGTCCGGCGGGGGTGGCCGGGGAAGGGGCGGCCGCGGCAGG
GGCGGTGGGGGTGGGGGTGAGATCGTGCTGGAGGAGCTGGAGCTTGCCGG
CAACCCAGTGAGTTTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14909:443..2458-

>mRNA_H-canaliculatus_F_contig14909.3707.1 ID=mRNA_H-canaliculatus_F_contig14909.3707.1|Name=mRNA_H-canaliculatus_F_contig14909.3707.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1602bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14909:443..2458- (Hapterophycus canaliculatus Oshoro5f female)
TACCTGTCCTCCGCGCTCGCTAAGGCAGCGACTGCCGCTCTCACCGCCAG
CGAAACTTCCGCGAAAACTCCTCGAAGCGGCAAGCTCGACGGCGGCAGCG
GCAACAAGGCCGACAGCAAACTCTTCGACGGCAGCGAGGCCTCCGCCACC
GCTACGGCGGGCCAGGGGGAGACCGGGGACGATGCAGGGTCCACCCCGCC
TCCTCCCCCGGTAGAGTCCGGGATCCGGCGGCTGCTTCTGACCGGCAATC
CTCGCCTCGGCGACGCGGGTGCGAGAGCGCTAGCGGCCGCGCTGAAGAAG
GACCGCTCTCTCGAGGTCCTGGACCTCACCAGTACCTGTCCTCCGCGCTC
GCTAAGGCAGCGACTGCCGCTCTCACCGCCAGCGAAACTTCCGCGAAAAC
TCCTCGAAGCGGCAAGCTCGACGGCGGCAGCGGCAACAAGGCCGACAGCA
AACTCTTCGACGGCAGCGAGGCCTCCGCCACCGCTACGGCGGGCCAGGGG
GAGACCGGGGACGATGCAGGGTCCACCCCGCCTCCTCCCCCGGTAGAGTC
CGGGATCCGGCGGCTGCTTCTGACCGGCAATCCTCGCCTCGGCGACGCGG
GTGCGAGAGCGCTAGCGGCCGCGCTGAAGAAGGACCGCTCTCTCGAGGTC
CTGGACCTCACCAGGTGTAAAATCGGCGACGACGGCGTGCGATGCCTGGC
CGAGGCTCTGAGGTCCAACTCGTGCCTTCGCGAGCTCAGGTGTAAAATCG
GCGACGACGGCGTGCGATGCCTGGCCGAGGCTCTGAGGTCCAACTCGTGC
CTTCGCGAGCTCAGGCTTGGATACAACGACATCTCTGCGGACGGGGCCTC
CGCCCTCGCCTCCCTCCTGCACGCCGGCTCGAGCGCCTTGGAGTCTCTCG
AGCTCCAGGGTAACCACGTCGGCGACGACGGCGCCGTCGCCCTGGCTAAC
GGCCTGGCCGGCCACGGGGCTTGGGGAGGCAAGCGCGGCGGCCGGAGGGA
TGTTAGACGGGCAAGGCGAGAGGGGTCCGGGGGTCTGCGGTCGCTGAATC
TGGCGGGGAACGGTATCGGGTGCGCCGGAGGGGTGGCGCTCGCGGAGGCG
TTGTCCGGCGGGGGTGGCCGGGGAAGGGGCGGCCGCGGCAGGGGCGGTGG
GGGTGGGGGTGAGATCGTGCTGGAGGAGCTGGAGCTTGCCGGCAACCCAG
TGAGTTTAGCTTGGATACAACGACATCTCTGCGGACGGGGCCTCCGCCCT
CGCCTCCCTCCTGCACGCCGGCTCGAGCGCCTTGGAGTCTCTCGAGCTCC
AGGGTAACCACGTCGGCGACGACGGCGCCGTCGCCCTGGCTAACGGCCTG
GCCGGCCACGGGGCTTGGGGAGGCAAGCGCGGCGGCCGGAGGGATGTTAG
ACGGGCAAGGCGAGAGGGGTCCGGGGGTCTGCGGTCGCTGAATCTGGCGG
GGAACGGTATCGGGTGCGCCGGAGGGGTGGCGCTCGCGGAGGCGTTGTCC
GGCGGGGGTGGCCGGGGAAGGGGCGGCCGCGGCAGGGGCGGTGGGGGTGG
GGGTGAGATCGTGCTGGAGGAGCTGGAGCTTGCCGGCAACCCAGTGAGTT
TA
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