mRNA_H-canaliculatus_F_contig14907.3705.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14907.3705.1
Unique NamemRNA_H-canaliculatus_F_contig14907.3705.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14907.3705.1 vs. uniprot
Match: D8LB04_ECTSI (Phosphoinositide phospholipase C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB04_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 4.090e-15
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:   10 QNWVLYNNRNMSRIYPAGSRVDSSNYDPMPSWNVGNQV 123
            ++WV+YN RNMSRIYPAGSRVDSSNYDP+PSWNVG+Q+
Sbjct:   18 EDWVVYNARNMSRIYPAGSRVDSSNYDPVPSWNVGSQI 55
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BLAST of mRNA_H-canaliculatus_F_contig14907.3705.1 vs. uniprot
Match: A0A6H5KNM2_9PHAE (Phosphoinositide phospholipase C n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM2_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.530e-14
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:   10 QNWVLYNNRNMSRIYPAGSRVDSSNYDPMPSWNVGNQV 123
            ++WV+YN RNMSRIYPAGSRVDSSNYDP+PSWNVG+Q+
Sbjct:  200 EDWVVYNARNMSRIYPAGSRVDSSNYDPVPSWNVGSQI 237
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BLAST of mRNA_H-canaliculatus_F_contig14907.3705.1 vs. uniprot
Match: A0A7S1TYZ2_9STRA (Phosphoinositide phospholipase C n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYZ2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.190e-12
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   16 WVLYNNRNMSRIYPAGSRVDSSNYDPMPSWNVGNQV 123
            WVLYN + MSRIYPAG+RVDSSNYDP+PSW  GNQ+
Sbjct:   65 WVLYNQKQMSRIYPAGTRVDSSNYDPVPSWVAGNQI 100
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BLAST of mRNA_H-canaliculatus_F_contig14907.3705.1 vs. uniprot
Match: A0A7R9U2A9_9STRA (Phosphoinositide phospholipase C n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2A9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.080e-11
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   10 QNWVLYNNRNMSRIYPAGSRVDSSNYDPMPSWNVGNQV 123
            + W+ +N R MSRIYPAG RVDSSNYDP+PSW VG+Q+
Sbjct:  135 EEWIAHNQRQMSRIYPAGRRVDSSNYDPVPSWAVGSQI 172
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BLAST of mRNA_H-canaliculatus_F_contig14907.3705.1 vs. uniprot
Match: A0A836C9T5_9STRA (Phosphoinositide phospholipase C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.430e-10
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   16 WVLYNNRNMSRIYPAGSRVDSSNYDPMPSWNVGNQV 123
            W++YN R MSRIYP G RVDSSNYDPMP W  G+Q+
Sbjct:  551 WIVYNQRQMSRIYPGGQRVDSSNYDPMPHWCAGSQI 586
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BLAST of mRNA_H-canaliculatus_F_contig14907.3705.1 vs. uniprot
Match: A0A7S2FC25_9STRA (Phosphoinositide phospholipase C (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FC25_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.020e-10
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   10 QNWVLYNNRNMSRIYPAGSRVDSSNYDPMPSWNVGNQV 123
            ++WV YN  N SRIYP G+RV+SSNYDP PSW+ G+Q+
Sbjct:   30 EDWVTYNMTNFSRIYPDGTRVNSSNYDPSPSWSTGSQL 67
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BLAST of mRNA_H-canaliculatus_F_contig14907.3705.1 vs. uniprot
Match: A0A7S3XN70_HETAK (Phosphoinositide phospholipase C n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN70_HETAK)

HSP 1 Score: 62.8 bits (151), Expect = 3.640e-10
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 RPSQNWVLYNNRNMSRIYPAGSRVDSSNYDPMPSWNVGNQV 123
            + + NWV YN R MSRIYPAG RV+SSNYDP+P W  G+Q+
Sbjct:  342 KAAANWVEYNTRQMSRIYPAGHRVNSSNYDPVPHWCAGSQI 382
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BLAST of mRNA_H-canaliculatus_F_contig14907.3705.1 vs. uniprot
Match: A0A6F9DP67_9ASCI (Phosphoinositide phospholipase C n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DP67_9ASCI)

HSP 1 Score: 62.8 bits (151), Expect = 3.660e-10
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   16 WVLYNNRNMSRIYPAGSRVDSSNYDPMPSWNVGNQVCS 129
            ++LYNNR  SRIYP G+RVDSSNY+PMP WN G+Q+ S
Sbjct: 1019 FILYNNRQFSRIYPKGARVDSSNYNPMPFWNCGSQLVS 1056
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BLAST of mRNA_H-canaliculatus_F_contig14907.3705.1 vs. uniprot
Match: A0A7S2V3Z4_9STRA (Phosphoinositide phospholipase C (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3Z4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.370e-10
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   16 WVLYNNRNMSRIYPAGSRVDSSNYDPMPSWNVGNQ 120
            WV YN R M+R YP GSRVDSSNY+P+P WNVG+Q
Sbjct:   82 WVHYNMRQMTRNYPKGSRVDSSNYNPVPHWNVGSQ 116
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BLAST of mRNA_H-canaliculatus_F_contig14907.3705.1 vs. uniprot
Match: R7UZA4_CAPTE (Phosphoinositide phospholipase C (Fragment) n=3 Tax=Capitella teleta TaxID=283909 RepID=R7UZA4_CAPTE)

HSP 1 Score: 60.5 bits (145), Expect = 2.370e-9
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   10 QNWVLYNNRNMSRIYPAGSRVDSSNYDPMPSWNVGNQV 123
            Q ++ YN R MSRIYPAG R+DSSNYDP+P W VG+Q+
Sbjct:  249 QKFIRYNKRQMSRIYPAGGRIDSSNYDPVPLWCVGSQL 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14907.3705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB04_ECTSI4.090e-1581.58Phosphoinositide phospholipase C n=1 Tax=Ectocarpu... [more]
A0A6H5KNM2_9PHAE1.530e-1481.58Phosphoinositide phospholipase C n=1 Tax=Ectocarpu... [more]
A0A7S1TYZ2_9STRA2.190e-1277.78Phosphoinositide phospholipase C n=2 Tax=Phaeomona... [more]
A0A7R9U2A9_9STRA5.080e-1168.42Phosphoinositide phospholipase C n=1 Tax=Pinguioco... [more]
A0A836C9T5_9STRA1.430e-1069.44Phosphoinositide phospholipase C n=1 Tax=Tribonema... [more]
A0A7S2FC25_9STRA3.020e-1063.16Phosphoinositide phospholipase C (Fragment) n=1 Ta... [more]
A0A7S3XN70_HETAK3.640e-1063.41Phosphoinositide phospholipase C n=1 Tax=Heterosig... [more]
A0A6F9DP67_9ASCI3.660e-1068.42Phosphoinositide phospholipase C n=1 Tax=Phallusia... [more]
A0A7S2V3Z4_9STRA5.370e-1071.43Phosphoinositide phospholipase C (Fragment) n=1 Ta... [more]
R7UZA4_CAPTE2.370e-965.79Phosphoinositide phospholipase C (Fragment) n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14907contigH-canaliculatus_F_contig14907:857..1012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue6.3e-12
Seed eggNOG ortholog2880.D8LB04
KEGG rclassRC00017,RC00425
KEGG koko:K05857
KEGG ReactionR03332,R03435,R10952
KEGG Pathwayko00562,ko01100,ko04020,ko04070,ko04919,ko04933,map00562,map01100,map04020,map04070,map04919,map04933
KEGG ModuleM00130
EggNOG free text desc.phosphatidylinositol phospholipase C activity
EggNOG OGsKOG0169@1,KOG0169@2759
EC3.1.4.11
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionPhospholipase C, phosphatidylinositol-specific, Y domain
Ec32 orthologEc-27_005750.1
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.5476813-CDS-H-canaliculatus_F_contig14907:856..10121622929233.5476813-CDS-H-canaliculatus_F_contig14907:856..1012Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14907 857..1012 -
1696845728.5435808-CDS-H-canaliculatus_F_contig14907:856..10121696845728.5435808-CDS-H-canaliculatus_F_contig14907:856..1012Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14907 857..1012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14907.3705.1prot_H-canaliculatus_F_contig14907.3705.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14907 857..1012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14907.3705.1

>prot_H-canaliculatus_F_contig14907.3705.1 ID=prot_H-canaliculatus_F_contig14907.3705.1|Name=mRNA_H-canaliculatus_F_contig14907.3705.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=52bp
RPSQNWVLYNNRNMSRIYPAGSRVDSSNYDPMPSWNVGNQVCSHARTAST
FL
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mRNA from alignment at H-canaliculatus_F_contig14907:857..1012-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14907.3705.1 ID=mRNA_H-canaliculatus_F_contig14907.3705.1|Name=mRNA_H-canaliculatus_F_contig14907.3705.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=156bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14907:857..1012- (Hapterophycus canaliculatus Oshoro5f female)
CGACCATCGCAGAACTGGGTGCTCTACAACAACCGAAACATGTCCCGCAT
CTACCCCGCCGGATCAAGAGTCGATTCGTCCAACTACGACCCCATGCCGA
GCTGGAACGTTGGCAACCAGGTGTGTTCGCACGCACGGACGGCTTCTACC
TTCTTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14907:857..1012-

>mRNA_H-canaliculatus_F_contig14907.3705.1 ID=mRNA_H-canaliculatus_F_contig14907.3705.1|Name=mRNA_H-canaliculatus_F_contig14907.3705.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=312bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14907:857..1012- (Hapterophycus canaliculatus Oshoro5f female)
CGACCATCGCAGAACTGGGTGCTCTACAACAACCGAAACATGTCCCGCAT
CTACCCCGCCGGATCAAGAGTCGATTCGTCCAACTACGACCCCATGCCGA
GCTGGAACGTTGGCAACCAGGTGTGTTCGCACGCACGGACGGCTTCTACC
TTCTTACGACCATCGCAGAACTGGGTGCTCTACAACAACCGAAACATGTC
CCGCATCTACCCCGCCGGATCAAGAGTCGATTCGTCCAACTACGACCCCA
TGCCGAGCTGGAACGTTGGCAACCAGGTGTGTTCGCACGCACGGACGGCT
TCTACCTTCTTA
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