mRNA_H-canaliculatus_F_contig149.3700.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig149.3700.1
Unique NamemRNA_H-canaliculatus_F_contig149.3700.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig149.3700.1 vs. uniprot
Match: A0A6H5KVH9_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVH9_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 9.880e-102
Identity = 167/227 (73.57%), Postives = 195/227 (85.90%), Query Frame = 3 
Query:  942 YTKTLDELDTLIDTAEAGEGDARQEAISDATMCLKRLAGMKRSYNLEIKLLKDPASKGHYNLEKSRKDARLTELQTKFDVVQASGQSKRDELFGGRRDVESGEATERSAEAKLDEAKQYQDKTEEAYKNMIGVLQETEATADGTAVELTNQREQLTRITEEAIQIDTTLKRSDRLIKVFAKRMMTDKFIQCFGCLNVTALVAIIIYVVVQNVDLPGGDNAEPPDPSA 1622
            Y KTLD+LD  I T E+G GDAR++A+S+A+  LKRLAGM+RSYNLEIKL+KDP  K HYNLEKS+KD+R   LQ++FD  +ASG S RDELFGGRRDVESGEA  +SAEAKL EA QYQDKTE AYKNMIGVLQETEATAD TAVELTNQREQL RITE+  +ID+ L R+DRL+KVF+KRMMTDKFIQCFGCLNV+A+VAII+YVVVQ V+LPGGD+ + PDP+A
Sbjct:   13 YGKTLDQLDGFIATMESGSGDAREDAMSEASRSLKRLAGMRRSYNLEIKLIKDPNMKAHYNLEKSQKDSRYATLQSRFDAAKASGDSTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDPAA 239
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BLAST of mRNA_H-canaliculatus_F_contig149.3700.1 vs. uniprot
Match: A0A835Z1V1_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V1_9STRA)

HSP 1 Score: 167 bits (424), Expect = 5.510e-44
Identity = 98/217 (45.16%), Postives = 139/217 (64.06%), Query Frame = 3 
Query:  942 YTKTLDELDTLIDTAEAGEGDARQEAISDATMCLKRLAGMKRSYNLEIKLLKDPASKGHYNLEKSRKDARLTELQTKFDVVQAS-GQSKRDELFGGRRDVESGEATERSAEAKLDEAKQYQDKTEEAYKNMIGVLQETEATADGTAVELTNQREQLTRITEEAIQIDTTLKRSDRLIKVFAKRMMTDKFIQCFGCLNVTALVAIIIYVVVQNVDLPG 1589
            Y K LDEL   +   +      ++  I+ AT  ++RL GMKRSYNLEIKL++D   K  Y  EK+ KDA+LTEL+ + +  +     S +  LF GR    + E   ++A+ KLD+A+  Q+KTE  YKN+I VL++TE     TA  L  QR Q++ ITE  +++D  L R+++LI VF++R+ TDK IQCF  +NV ALVAII+YVV++NV LPG
Sbjct:   11 YGKALDELSDQVKAVKGASAAEKEAKIATATQTVRRLQGMKRSYNLEIKLMRDATQKASYQEEKNAKDAKLTELEAQLEEAKNKPAGSDKVSLFSGRA---AEEPKVKTADQKLDQAEIIQNKTEAKYKNIITVLEQTEEVGSATAATLQEQRAQISEITENVMEMDGMLTRANKLIMVFSRRLATDKMIQCFAFINVAALVAIIVYVVIKNVGLPG 224
[Close]
BLAST of mRNA_H-canaliculatus_F_contig149.3700.1 vs. uniprot
Match: A0A835Z325_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z325_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.930e-34
Identity = 95/230 (41.30%), Postives = 128/230 (55.65%), Query Frame = 3 
Query:  942 YTKTLDELDT-LIDTAEAGEGDARQEAISDATMCLKRLAGMKRSYNLEIKLLKDPASKGHYNLEKSRKDARLTELQTKFDVVQASG--QSKRDELFGGRRDVESGEATERSAEAKLDEAKQYQDKTEEAYKNMIGVLQETEATADGTAVELTNQREQLTRITEEAIQIDTTLKRSDRLIKVFAKRMMTDKFIQCFGCLNVTALVAIIIYVVVQNVDLPGGDNAEPPDPSA 1622
            Y   LD L++ L    EA     R +  S A   ++RL G+KRSYNLEIKL +D   K  Y   K+ KDARL +L+ + +  +     +++R  LF GR  +E   A    A+AKLD+A   QDKTE  YKNM+ VL +TE      A  L +QR Q+  I E+   +   L R+ +L+ VF KR+ TDKFIQCFG +NV  LV II+YVV+    L     + PP   A
Sbjct:   11 YGNVLDGLESQLHQVREAYTPSDRDQLASTAASTVRRLQGIKRSYNLEIKLTRDTGLKAMYTDAKAAKDARLEQLEAQLEEARRKPGREAERAALFDGRA-IEMAPA----ADAKLDQASAIQDKTEARYKNMVTVLAQTEEIGTAAAASLADQRTQMVAIDEDVKVMHENLTRAGKLLHVFGKRLATDKFIQCFGFVNVALLVGIILYVVITKTGLSSSGASNPPPTPA 235
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BLAST of mRNA_H-canaliculatus_F_contig149.3700.1 vs. uniprot
Match: B8BZJ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZJ7_THAPS)

HSP 1 Score: 112 bits (279), Expect = 3.170e-24
Identity = 75/210 (35.71%), Postives = 111/210 (52.86%), Query Frame = 3 
Query: 1041 LKRLAGMKRSYNLEIKLLKDPASKGHYNLEKSRKDARLTELQTKFDVVQASGQSKRDELFGGRRDVES---GEATERSAE----AKLDEAKQYQDKTEEAYKNMIGVLQETEATADGTAVELTNQREQLTRITEEAIQIDTTLKRSDRLIKVFAKRMMTDKFIQCFGCLNVTALVAIIIYVVVQNVDLPGGDN-AEPPDPSA*RATSALI 1646
            L+   G K+SY +E +L+ DP  K  Y  + SR    L+      D+    G  +R ELF G R   S   GE  E S E    + L +    QDKT+ +  N   ++  ++   + T  EL  QREQ+  +  EA++I+  L+R+D+LIK F KRM TD+FIQCF C+N+  LV ++IY +++   L GG+N   P  P   R    L+
Sbjct:   14 LRAANGTKKSYKMETRLVADPNQKRMYENKLSRLSEELSSCAN--DLKAMKGGMQRGELFVGARGKSSRGGGEYGEMSGEEAGDSMLSDMNNIQDKTKNSLANTKHMVAASKEVGEATMEELLRQREQIRNVDNEAMRIEDNLQRADKLIKTFGKRMATDRFIQCFACINILLLVGVVIYTILKKGSLTGGENEGAPASPVGGRLLRGLL 221
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BLAST of mRNA_H-canaliculatus_F_contig149.3700.1 vs. uniprot
Match: A0A7S1FMQ8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMQ8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 8.170e-20
Identity = 70/205 (34.15%), Postives = 109/205 (53.17%), Query Frame = 3 
Query:  951 TLDELDTLIDTAEAGEGDARQEAISDATMCLKRLAGMKRSYNLEIKLLKD-PASKGHYNLEKSRKDARLTELQTKFDVVQASGQSKRDELFGGRRDVESGEATERSAEAKLDEAKQYQDKTEEAYKNMIGVLQETEATADGTAVELTNQREQLTRITEEAIQIDTTLKRSDRLIKVFAKRMMTDKFIQCFGCLNVTALVAIIIYV 1562
            TL E+   ID        A Q AI +A   LK+ + +++SY LE++L+   P  K  Y  +    +  L E   K D  +A  Q  R EL  G  +   G   ER  +  L EA + QDKT+E+      ++ E++     T  EL  QR Q+ R+T++ + I+  L R+++LIK F +RM TDKFIQCF C+N+  L+ ++ ++
Sbjct:   17 TLPEIIRDIDRVRKKGPYAIQSAIRNAEDQLKKCSNIQKSYKLELRLMVGMPVEKKKYENDLQELENELRECNDKLDDAKARAQ--RSELMSGANN--EGPDPERDGDQMLMEAGKIQDKTKESLMTTQNLIHESKEVGVTTLEELNRQRNQIVRVTDDVMAIEGELARAEKLIKTFGRRMATDKFIQCFTCVNILLLLGVVCFI 217
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BLAST of mRNA_H-canaliculatus_F_contig149.3700.1 vs. uniprot
Match: A0A7S4A3K9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3K9_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.660e-19
Identity = 76/229 (33.19%), Postives = 117/229 (51.09%), Query Frame = 3 
Query:  942 YTKTLDELDTLIDTAEAGEGDARQEAISDATMCLKRLAGMKRSYNLEIKLLKDPASKGHYNLEKSRKDARLTELQTKFDVVQASGQSKRDELFGGRRDVESGEATERSAEAKLDEAKQYQDKTEEAYKNMIGVLQETEATADGTAVELTNQREQLTRITEEAIQIDTTLKRSDRLIKVFAKRMMTDKFIQCFGCLNVTALVAIIIYVVVQNVDLPGG---DNAEPPDPS 1619
            Y  ++D+ D L+ +  A E D R   I  A   LKR  G+K+SY LE++LL+D   K +Y       D R  EL+ +  V +   +++R  L    ++  +     +  +  LD+A   QDKTE   +    +++ ++     T  EL  Q++Q+  ++ + + I+  L R+DRLI+ F KRMMTDK I  F  LN+ AL  II+Y VV    L      D  E PD S
Sbjct:   70 YRSSIDDADRLVTSLGACEPDERLSIIDAADAKLKRAGGIKKSYKLELRLLRDRELKRNYEESLRELDDRRDELKRR--VEEHRERTERSTLL---QETPAAFGEHKGNDYYLDKAHSLQDKTENTLERTTQMIEASKEVGASTLSELERQQDQIKDVSADIMLIEDNLSRADRLIRNFTKRMMTDKLIMGFAFLNMCALTGIIVYCVVTGKVLGDDKKKDKEEGPDES 293
[Close]
BLAST of mRNA_H-canaliculatus_F_contig149.3700.1 vs. uniprot
Match: F0YJK0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJK0_AURAN)

HSP 1 Score: 95.5 bits (236), Expect = 4.500e-18
Identity = 73/221 (33.03%), Postives = 111/221 (50.23%), Query Frame = 3 
Query:  954 LDELDTLIDTAEAGEGDARQEAISDATMCLKRLAGMKRSYNLEIKLLKDPASKGHYNLEKSRKDARLTELQTKFDVVQASGQSKRDELFGGRRDVESGEATERSAEAKLDEAKQYQDKTEEAYKNMIGVLQETEATADGTAVELTNQREQLTRITEEAIQIDTTLKRSDRLIKVFAKRMMTDKFIQCFGCLNVTALVAIIIYVVVQNVDL-PGGDNAEPPD 1613
            +DEL  ++       GD R     DA +C  R   ++RSY LE++LL+D A K  Y  +    D R TE+  + D+    G S R EL G         +  +     LD+A + QD+T++A    + +++ +         EL  Q+EQ   IT + + I+  L R+D+LI+ F KRMMTDK I CF  +N+  L+ I++Y VV    L   G   + PD
Sbjct:   60 VDELAAIVLLINGTVGDERVSEC-DAKLC--RAQSIRRSYCLEVRLLRDKAIKRTYEQKLKGLDTRCTEI--RHDIECTRGSSNRQELLG----APPAHSDFKGNANYLDDAGKIQDQTQDALSRTMHLVEASSEVGHSALNELERQQEQARDITTDVMIIEDNLTRADKLIRNFTKRMMTDKLIVCFAFVNMCGLIGIVVYCVVTGRGLGTEGQKEDRPD 271
[Close]
BLAST of mRNA_H-canaliculatus_F_contig149.3700.1 vs. uniprot
Match: A0A7S2P5B9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P5B9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.320e-18
Identity = 61/216 (28.24%), Postives = 114/216 (52.78%), Query Frame = 3 
Query:  954 LDELDTLIDTAEAGEGDARQEAISDATMCLKRLAGMKRSYNLEIKLLKDPASKGHYNLEKSRKDARLTELQTKFDVVQASGQSKRDELFGGRRDVESGEATERSAEAKLDEAKQYQDKTEEAYKNMIGVLQETEATADGTAVELTNQREQLTRITEEAIQIDTTLKRSDRLIKVFAKRMMTDKFIQCFGCLNVTALVAIIIYVVVQNVDLPGGDNA 1601
            +++L T++    A  G  +++   +A   L+   G KRSY LE++++K+   +  Y  +    + +L  L      +++S  + +D L  G    ++G   E+  +A ++EA+  QDKT+ +      ++ E++     T   L  QR Q+ RI   A +    L R+D LIK F+KRM  DKFIQC  C+N++  + +I++++ +N     GD++
Sbjct:   15 IEDLSTVLGLVVAQTGSKQKQKFDEADKKLRDANGTKRSYKLEMRVIKNATQRKMYEKQLKDHETKLKALADHLKNLKSS--ATKDTLLEG---ADTGRTPEQEGDAMMNEARNTQDKTQTSLDRTKQLVAESKDIGQNTLATLEEQRAQIERIDAHADRTMENLGRADLLIKNFSKRMANDKFIQCCACINISLFIGVILFLIFKNRSDDDGDDS 225
[Close]
BLAST of mRNA_H-canaliculatus_F_contig149.3700.1 vs. uniprot
Match: F0YKX2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKX2_AURAN)

HSP 1 Score: 76.6 bits (187), Expect = 1.190e-10
Identity = 61/201 (30.35%), Postives = 107/201 (53.23%), Query Frame = 3 
Query:  942 YTKTLDELDTLIDTAEAGEGDARQEAISDATMCLKRLAGMKRSYNLEIKLLKDPASKGHYNLEKSRKDARLTELQTKFDVVQASGQSKRDELFGGRRDVESGEATERSAEAKLDEAKQYQDKTEEAYKNMIGVLQETEATADGTAVE-----LTNQREQLTRITEEAIQIDTTLKRSDRLIKVFAKRMMTDKFIQCFGCLN 1529
            Y   +DEL   + +     G   ++  ++    L R   +K+SY LE++LL+D   KG +N +    D R  EL+ + + V+  G+++R+ L     D  +G    +S    L++A   QD+T++A    I +++ ++   + T  E     L +Q+EQ+  I+ + + I+  L R+D+LI+ F KRMMTDK I CF  +N
Sbjct:   12 YAGAVDELAVRVSSIRELSGCDFRDIAAECDTKLSRAKSIKKSYCLEMRLLRDQKIKGLHNCKLKELDRRCAELELEIEFVRG-GRARRELLTSSSVD-HAGCDDNKSC---LNDAAILQDQTQDALSRTINLVEASKEVGNSTINEHTILLLEHQQEQVKDISTDVMLIEDNLLRADKLIRNFTKRMMTDKLILCFAFVN 207
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BLAST of mRNA_H-canaliculatus_F_contig149.3700.1 vs. uniprot
Match: A0A7S2W424_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W424_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.160e-8
Identity = 38/120 (31.67%), Postives = 65/120 (54.17%), Query Frame = 3 
Query: 1278 LDEAKQYQDKTEEAYKNMIGVLQETEATADGTAVELTNQREQLTRITEEAIQIDTTLKRSDRLIKVFAKRMMTDKFIQCFGCLNVTALVAIIIYVVVQNVDLPGGDNAEPPDPSA*RATS 1637
            LD+ +  Q  T+ +    + VL +TE  A  T  EL  QR+Q+++I  +   +   L+R+D L+++F KRMM+DK  Q    LN+  LV +I++ + +N  L    ++    P    AT+
Sbjct:    6 LDKTQAIQSDTKASLNRTLNVLDDTEDVAQNTLGELGRQRDQISQIQGDVENVRDALRRADVLLRMFRKRMMSDKLFQMLAVLNLLFLVGVIVFAIYKNGGLGADKSSNKGSPGDDDATA 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig149.3700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KVH9_9PHAE9.880e-10273.57t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835Z1V1_9STRA5.510e-4445.16Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A835Z325_9STRA1.930e-3441.30Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
B8BZJ7_THAPS3.170e-2435.71Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1FMQ8_9STRA8.170e-2034.15Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4A3K9_9STRA2.660e-1933.19Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
F0YJK0_AURAN4.500e-1833.03Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2P5B9_9STRA6.320e-1828.24Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
F0YKX2_AURAN1.190e-1030.35Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2W424_9STRA1.160e-831.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig149contigH-canaliculatus_F_contig149:43915..48685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue2.1e-23
Seed eggNOG ortholog35128.Thaps4535
EggNOG OGs29I5R@1,2RRCR@2759,2XCW0@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-20_002310.1
Exons5
Model size2088
Cds size792
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929232.4125226-UTR-H-canaliculatus_F_contig149:43914..443771622929232.4125226-UTR-H-canaliculatus_F_contig149:43914..44377Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig149 43915..44377 -
1696845727.8799212-UTR-H-canaliculatus_F_contig149:43914..443771696845727.8799212-UTR-H-canaliculatus_F_contig149:43914..44377Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig149 43915..44377 -
1622929232.4979026-UTR-H-canaliculatus_F_contig149:47852..486851622929232.4979026-UTR-H-canaliculatus_F_contig149:47852..48685Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig149 47853..48685 -
1696845727.952061-UTR-H-canaliculatus_F_contig149:47852..486851696845727.952061-UTR-H-canaliculatus_F_contig149:47852..48685Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig149 47853..48685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929232.4290216-CDS-H-canaliculatus_F_contig149:44377..445001622929232.4290216-CDS-H-canaliculatus_F_contig149:44377..44500Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig149 44378..44500 -
1696845727.8943412-CDS-H-canaliculatus_F_contig149:44377..445001696845727.8943412-CDS-H-canaliculatus_F_contig149:44377..44500Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig149 44378..44500 -
1622929232.444508-CDS-H-canaliculatus_F_contig149:45195..453721622929232.444508-CDS-H-canaliculatus_F_contig149:45195..45372Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig149 45196..45372 -
1696845727.9050848-CDS-H-canaliculatus_F_contig149:45195..453721696845727.9050848-CDS-H-canaliculatus_F_contig149:45195..45372Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig149 45196..45372 -
1622929232.4571438-CDS-H-canaliculatus_F_contig149:45720..458581622929232.4571438-CDS-H-canaliculatus_F_contig149:45720..45858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig149 45721..45858 -
1696845727.9185658-CDS-H-canaliculatus_F_contig149:45720..458581696845727.9185658-CDS-H-canaliculatus_F_contig149:45720..45858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig149 45721..45858 -
1622929232.4702785-CDS-H-canaliculatus_F_contig149:46712..467871622929232.4702785-CDS-H-canaliculatus_F_contig149:46712..46787Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig149 46713..46787 -
1696845727.9305487-CDS-H-canaliculatus_F_contig149:46712..467871696845727.9305487-CDS-H-canaliculatus_F_contig149:46712..46787Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig149 46713..46787 -
1622929232.4836736-CDS-H-canaliculatus_F_contig149:47573..478521622929232.4836736-CDS-H-canaliculatus_F_contig149:47573..47852Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig149 47574..47852 -
1696845727.941958-CDS-H-canaliculatus_F_contig149:47573..478521696845727.941958-CDS-H-canaliculatus_F_contig149:47573..47852Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig149 47574..47852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig149.3700.1prot_H-canaliculatus_F_contig149.3700.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig149 44378..47852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig149.3700.1

>prot_H-canaliculatus_F_contig149.3700.1 ID=prot_H-canaliculatus_F_contig149.3700.1|Name=mRNA_H-canaliculatus_F_contig149.3700.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=264bp
MAPRKHTNEQTNARGTSGNVGTSYGGHTRVCKTTVRYTKTLDELDTLIDT
AEAGEGDARQEAISDATMCLKRLAGMKRSYNLEIKLLKDPASKGHYNLEK
SRKDARLTELQTKFDVVQASGQSKRDELFGGRRDVESGEATERSAEAKLD
EAKQYQDKTEEAYKNMIGVLQETEATADGTAVELTNQREQLTRITEEAIQ
IDTTLKRSDRLIKVFAKRMMTDKFIQCFGCLNVTALVAIIIYVVVQNVDL
PGGDNAEPPDPSA*
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mRNA from alignment at H-canaliculatus_F_contig149:43915..48685-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig149.3700.1 ID=mRNA_H-canaliculatus_F_contig149.3700.1|Name=mRNA_H-canaliculatus_F_contig149.3700.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4771bp|location=Sequence derived from alignment at H-canaliculatus_F_contig149:43915..48685- (Hapterophycus canaliculatus Oshoro5f female)
AAGCAGGGACGTTGATGTTTGCGATGTTGTTGGGCTGTTTCGGGTCCGTT
ACGAACTGCAGGATAGAACAGCTGTAGCTGCGGCCTTTCCCGCTTGCCAT
GCCCCGTCTCGCCGGGATTCACTGCTGCTTCCCAGGCATTTCACGCCTAG
CCGAACGCACTATCGCGAACACGATAGAGCATATAGGAGTGCTGACCATG
TGACAAAAGGCCTTGCTTTGATGTCTTCGATTTGCTCTGTAATTCCGTCA
TACCGCCGGCTGAACAAATATTTTTGGTTGTGACTGTTGTCTCTACTGTG
CATGTCTCATACGCGAATCACACCGCCTATCCATTAACCCCACCATGAGA
GTGAACGGTGTTCTCCGTGCCACTCCGTGCACATGTGGGTATCCTTCGTA
CGCTCTCTTTTTGAACGTCATTTTCGCTGTTTTTTCGAAGGCGTGAAGCA
AGTACAGTCGCGCTCGCTGAGCAAACACCTCTTCACTCGGCCAGTCAAGA
CTTTCATTCGCCCCCGAGACGCCTTTGGGTGGAGCAAGAACTGCCGGAGC
AACCGACATGGCTCCCCGTCGCAAAACTTGTCGGCTCAGCAGGGCAACAA
GCTCTTTTGGTGCTTCCTCATGTCACTACTCCGAAGGGAACGTATCGTGC
CCACCCACCATTAATCAAATTAGTTCGCCCAAGAGATGCCCTCGATGACC
TGCCACCGCTCGTCGCCAACAGACCTGCCTATTCCTGCACCCTTTCTCCT
CTTTCTGTCTCTTCCTTACCCCACCCGGAACGGGTTCAAAACACCGGCCA
AAACGGAATGCCGGTTGTGATCCCCGGGCGCCGATGGCACCGCGAAAACA
CACGAACGAACAAACAAACGCGCGTGGTACTTCCGGAAACGTCGGGACGT
CATACGGGGGGCACACGCGCGTATGCAAAACAACCGTTCGTTACACCAAG
ACTCTTGATGAGCTTGATACCTTGATCGACACGGCGGAGGCGGGGGAAGG
AGACGCGCGACAGGAGGCCATCTCGGACGCTACGATGTGCTTGAAACGGC
TGGCGGGGATGAAGAGGAGCTACAACCTAGAGATCAAGCTCCTTAAAGAC
CCCGCCTCCAAGGTTCGTGTTTCGATATTGCTGTTGTTTCGGGTCTGCCC
GCCCGATCGTCTTGGTGCAAAGGCCCGACTCGGTGCGCCTGCTGGAGGAC
AGGGAACCGGACGGAAGCGCACAGCTGCGCTCCCAGAGGGTTTCTGGCGC
GCATACACCGAGAATTGGTTTTAAAGCTGTCGTGTGACAAATCATGATGT
GTAGGCATGGCTGGAAGGTTCGCGTTGCCGTAGATACACTATGCTGAGCC
CGTTTATTTTTTGTTTCACCTTCCCGCCAGAAACAGGGTTAATCGCACAC
GTGTCATTGGTACGCGCACGAAGGGGTTAAGGGCCAACGGGCTCCACTTC
GTCGAAAGTTTTTCGAGAGGCTTTTTTGTTGCGCGTGCCTGCGTTGGTTT
TGGGGGTACGGTTGACTCGCCCGCGTACCTTGTGTCTTGGTTGTATGCGA
TATGATTGTAAGGTAGGTGTGGTCTAGGCCACGCACCACCATGTCCTACC
GACGCGCGAGATGCGAAGGCCTCCCTTCTCTTTTCCCAGTTCATCATCCT
AAAAAGCGCGAGAACCCTCCCGTTTGCCCCAATTATGTCTTCCCCGATGA
TCCTGCGCAGAAATTTTGGACGCCTCTTTTGCCCTCCTCTGCTCGAGGTC
GTGAAACGGGCCGGGGTACCATACGTGACGTGCATCCCTCCCCTCCCCCC
TTGCCCTCTTCACGATGTCGTGCCCTTCATTGTGGACAACGCACACAACC
ACAAAACTGTGCTCATGTCTCGGACCGACCCCGCTGCCCGATCCGCAGGG
ACACTACAACCTGGAAAAGTCGCGAAAGGACGCACGGTTAACGGAGCTAC
AAACCAAATTCGACGTTGTTCAGGTGTGTCGCACGTAGACACGCAATGCC
GTGGTGTGGCGTGATGCGATACGATGGGGTGTGGGTCGGTTGGCGTGATT
TTTTGATGATCGGGAAAATCTTGTCGTGGCGATGATGACGTTGGGGTTGA
TGTGGCGTGAGTTCGCCACTTGGGCGCTACCGATCGAATTGAAACTCATG
GGAGAGAGGACGTTCATGGCGGGGGGATCATCAACGCAATGTTTTTTCCT
CTTTGGGCGAGGCACGCATCGGGATGGATTGGGCAGATGCCCGCCCTTAC
CGCGTAAGGGGTTACCTTAGTGAGGCGTGCTTTTTGCGCGAGCATGCTGA
AGGACCGGGGAATCTCGTACACTATCTTCAGCTTTGCCGGGGTCGTGGGA
GGGCCACGTACCCAATAAGGGGCCTGGCATGCATGCACTACGAAATGGAC
AAAGCCGCCATTTCACTTGTAGAGATAATGCAGTTCGAACGGTGTGGAAG
GAGCAGGCGGAGTGCGCTACTTGACCCCACACAGGCTGCTCGCGGAATCA
CTGGTGGGATTTCGGCGTCCTCCCGGATGACCTGGCCACGGCAGTGCTGG
AGCCCTCCCAATCATCGGTGGATGGTGTTTTATCGCGCTTGTGATGGTGC
CCACGGTGACGGTGGCAATGTTAGCGCTGTTGCCGGATGGTCGACCGCTT
TGCGCCGCAGACGCTTGCGTGAGGCTTCGCCACATGTCGATCGTCTCCGA
CCTTTTGAGGGCGGACGCTTAGCGCAAGAACCCCTTATGATATAGATTTC
TGCTGTCATCTCGTAGTAGCTTGCTGCTGATCGGTCCCCGAACCACCGAC
CATCAACCCTATCCTCGTTCATCACAGGCAAGCGGGCAGAGCAAGCGAGA
CGAGTTGTTTGGGGGTCGAAGAGACGTCGAGAGCGGAGAAGCGACGGAAA
GATCAGCTGAGGCCAAGCTGGACGAGGCCAAACAGTACCAGGACAAGACA
GAGGAGGCGTACAAGGTGAGCACTCAATGAAAACGCCTCTGCTTCTAAGG
CTTCGTGCTTTGAGGTGTCTACACCTTCCCCGTCGCGCTGAGACCGAGGA
GGCGTTTCGACATGCGCCGACTTCTTCCTCATGTTGTGACTGCGCGGAAC
GCGTTTGTGCGTCAAAACGCAAGAGAGGCAAAGATGAGCCTCCGCACTGC
TGCGATCCGACGCTTCCGTGCCTCGTGCCACGCGTACGGCGCGAGGAGAC
GACACGCACGCACGCAGTCATCTCTCTTGGCGACGCAATCGACCCCGGTC
CGTGCGGCGCGCTCCACGCTCCTCTCGCGGCTCGCGTCGAAAACGAAACG
ATCCGAAAAACAGAACATGATAGGGGTGCTGCAGGAGACTGAGGCGACGG
CGGACGGGACCGCGGTGGAGTTGACCAACCAACGCGAGCAGCTGACCCGC
ATCACGGAGGAAGCGATCCAGATCGACACCACCTTGAAGAGGTCGGACCG
GCTCATCAAGGTGTTCGCGAAGCGAATGATGACGGATAAGGTGTGTCGTT
GTGCGCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGGGAGGCAGTAGTTATGTGCTTTGTGGATCGTGCACGAAACG
TCTTGCAGAGGGAAGGGATTGCTGAACCCGACTCCCTCTGTGAAATGGAA
AGACGTAACCCAAAGGGTTGGAGACTGCCCACAAAATATGCCCCCAAAAC
AAATGGAGCGGAAACACATACACACACTTTGATATGGTTGTTTCCCATAA
TTGTTGAGCGCACACGCTGTACTGTCTGCGTTTTCTCCTTCTTTTTGTTT
GGAGGCTGTCTCGAGTGTCGTGCTGTGACCCGGCCTCCTCAGTATGTGTT
GGTTGCTGCGACGTCTTTCTGTGTGCTGAGTAGATGTGAGGTATGAACGA
CCTGTCATGTCGTGCTAGCGCTTTTGAGCCGTGGGACTGACAAACGGATT
CAACCTTCATCCAAATTAGTCGGCACCTTCAGAAGCTAAGTGCTACTTCG
TATTAGGTGATGCTGCATGACACGTCGAGACAGTTGTGCAGTGCGTCAGG
TGAAACGTTGCTTGTTGGGGTGCTGCACCTCACCTTCATCCTCCCGCCGG
CACATACGCCCACTCACGAGCTTGCGCACGGCACACGTGCCTCTCCCCGC
CCCCTCTCTCTATCGCCATGACTTTCGCCTCGCAGTTCATCCAATGTTTC
GGGTGCTTGAACGTAACCGCGCTGGTTGCGATCATCATCTACGTGGTGGT
ACAGAACGTTGACCTTCCTGGCGGCGACAATGCCGAACCGCCTGATCCAT
CCGCGTGAAGAGCAACGAGCGCTTTGATAAGTTTTACTTAGATGGTCCGG
AAATGGTCGACTACGCTGATGCCTTGGTCCCGACGTGGGCATCACCACGC
TTCGAGGAAAACGTTACCGGGGAGGGGATAGGGGTGATGCGCAGGCAAAA
TCGAAGGATACAGGCCTGAGCGCTTGCATTTTTTTTTTGTGGGAGCAGGT
GCGAGAGGCAAACTTCTTGATGTGTTTGTTTTTTGCTTGGCGCTCTTGGT
CACAGTCTTCGTGTCTCGCCGCGTCCGTTTTACACACACCCACGTCGAAG
TCAAGCGTTTGTTCGGTTGCTCAGGGCAGATCTTGCCTACGCTTTTGCGC
TGGGAAGAGTAGGATCAACCGCTTTTCCTTCTCGTTCTCACCCAGAGGCG
TGGCCGTCTGGAGCGGCCAAGCTTTTTTCTGACTGACCTTGTACTGTTAT
CGTATTTTTTTCGTAAGTTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig149:43915..48685-

>mRNA_H-canaliculatus_F_contig149.3700.1 ID=mRNA_H-canaliculatus_F_contig149.3700.1|Name=mRNA_H-canaliculatus_F_contig149.3700.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1584bp|location=Sequence derived from alignment at H-canaliculatus_F_contig149:43915..48685- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCACCGCGAAAACACACGAACGAACAAACAAACGCGCGTGGTACTTC
CGGAAACGTCGGGACGTCATACGGGGGGCACACGCGCGTATGCAAAACAA
CCGTTCGTTACACCAAGACTCTTGATGAGCTTGATACCTTGATCGACACG
GCGGAGGCGGGGGAAGGAGACGCGCGACAGGAGGCCATCTCGGACGCTAC
GATGTGCTTGAAACGGCTGGCGGGGATGAAGAGGAGCTACAACCTAGAGA
TCAAGCTCCTTAAAGACCCCGCCTCCAAGATGGCACCGCGAAAACACACG
AACGAACAAACAAACGCGCGTGGTACTTCCGGAAACGTCGGGACGTCATA
CGGGGGGCACACGCGCGTATGCAAAACAACCGTTCGTTACACCAAGACTC
TTGATGAGCTTGATACCTTGATCGACACGGCGGAGGCGGGGGAAGGAGAC
GCGCGACAGGAGGCCATCTCGGACGCTACGATGTGCTTGAAACGGCTGGC
GGGGATGAAGAGGAGCTACAACCTAGAGATCAAGCTCCTTAAAGACCCCG
CCTCCAAGGGACACTACAACCTGGAAAAGTCGCGAAAGGACGCACGGTTA
ACGGAGCTACAAACCAAATTCGACGTTGTTCAGGGACACTACAACCTGGA
AAAGTCGCGAAAGGACGCACGGTTAACGGAGCTACAAACCAAATTCGACG
TTGTTCAGGCAAGCGGGCAGAGCAAGCGAGACGAGTTGTTTGGGGGTCGA
AGAGACGTCGAGAGCGGAGAAGCGACGGAAAGATCAGCTGAGGCCAAGCT
GGACGAGGCCAAACAGTACCAGGACAAGACAGAGGAGGCGTACAAGGCAA
GCGGGCAGAGCAAGCGAGACGAGTTGTTTGGGGGTCGAAGAGACGTCGAG
AGCGGAGAAGCGACGGAAAGATCAGCTGAGGCCAAGCTGGACGAGGCCAA
ACAGTACCAGGACAAGACAGAGGAGGCGTACAAGAACATGATAGGGGTGC
TGCAGGAGACTGAGGCGACGGCGGACGGGACCGCGGTGGAGTTGACCAAC
CAACGCGAGCAGCTGACCCGCATCACGGAGGAAGCGATCCAGATCGACAC
CACCTTGAAGAGGTCGGACCGGCTCATCAAGGTGTTCGCGAAGCGAATGA
TGACGGATAAGAACATGATAGGGGTGCTGCAGGAGACTGAGGCGACGGCG
GACGGGACCGCGGTGGAGTTGACCAACCAACGCGAGCAGCTGACCCGCAT
CACGGAGGAAGCGATCCAGATCGACACCACCTTGAAGAGGTCGGACCGGC
TCATCAAGGTGTTCGCGAAGCGAATGATGACGGATAAGTTCATCCAATGT
TTCGGGTGCTTGAACGTAACCGCGCTGGTTGCGATCATCATCTACGTGGT
GGTACAGAACGTTGACCTTCCTGGCGGCGACAATGCCGAACCGCCTGATC
CATCCGCGTGATTCATCCAATGTTTCGGGTGCTTGAACGTAACCGCGCTG
GTTGCGATCATCATCTACGTGGTGGTACAGAACGTTGACCTTCCTGGCGG
CGACAATGCCGAACCGCCTGATCCATCCGCGTGA
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