mRNA_H-canaliculatus_F_contig14891.3689.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14891.3689.1
Unique NamemRNA_H-canaliculatus_F_contig14891.3689.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14891.3689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14891contigH-canaliculatus_F_contig14891:116..676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size561
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14891.3689.1prot_H-canaliculatus_F_contig14891.3689.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14891 128..601 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.8035948-UTR-H-canaliculatus_F_contig14891:115..1271622929230.8035948-UTR-H-canaliculatus_F_contig14891:115..127Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14891 116..127 +
1696845727.1808-UTR-H-canaliculatus_F_contig14891:115..1271696845727.1808-UTR-H-canaliculatus_F_contig14891:115..127Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14891 116..127 +
1622929230.8513746-UTR-H-canaliculatus_F_contig14891:601..6761622929230.8513746-UTR-H-canaliculatus_F_contig14891:601..676Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14891 602..676 +
1696845727.1991587-UTR-H-canaliculatus_F_contig14891:601..6761696845727.1991587-UTR-H-canaliculatus_F_contig14891:601..676Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14891 602..676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.8223548-CDS-H-canaliculatus_F_contig14891:127..6011622929230.8223548-CDS-H-canaliculatus_F_contig14891:127..601Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14891 128..601 +
1696845727.1898787-CDS-H-canaliculatus_F_contig14891:127..6011696845727.1898787-CDS-H-canaliculatus_F_contig14891:127..601Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14891 128..601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14891.3689.1

>prot_H-canaliculatus_F_contig14891.3689.1 ID=prot_H-canaliculatus_F_contig14891.3689.1|Name=mRNA_H-canaliculatus_F_contig14891.3689.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=158bp
MFFGHTFSFRSEENITPSHSIRPVSARQARAVNREGSAAGGRGGSLAKVR
RARGGRGRASRAGKGAAAVAPADSRPPLVPSALRSSARRKEQVGKERHGA
AQALNGLQAAASPPPSPPTRGGLPVALGACASAGKRSAGGLLQRHGGSYA
NMELRQR*
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mRNA from alignment at H-canaliculatus_F_contig14891:116..676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14891.3689.1 ID=mRNA_H-canaliculatus_F_contig14891.3689.1|Name=mRNA_H-canaliculatus_F_contig14891.3689.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=561bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14891:116..676+ (Hapterophycus canaliculatus Oshoro5f female)
CGGTCACGACACATGTTTTTCGGTCACACCTTCTCCTTTCGCTCTGAGGA
GAACATCACACCTAGCCACTCCATCAGGCCAGTCAGCGCTCGGCAAGCGC
GGGCGGTCAACAGGGAAGGTTCGGCAGCCGGTGGGCGGGGTGGGAGCCTC
GCCAAGGTAAGGCGCGCCCGCGGCGGACGGGGCAGGGCTTCACGAGCTGG
AAAGGGAGCAGCAGCGGTCGCACCCGCAGATTCGCGGCCGCCACTGGTGC
CATCTGCGCTTCGCTCCTCTGCGCGCCGGAAGGAGCAGGTCGGCAAGGAA
CGACACGGAGCTGCCCAGGCCCTGAACGGGCTGCAAGCCGCTGCTTCGCC
GCCGCCATCGCCTCCGACTCGTGGAGGGCTGCCGGTCGCACTAGGAGCTT
GCGCGTCTGCCGGGAAGAGGTCGGCAGGCGGACTACTGCAGCGCCACGGG
GGATCCTATGCGAACATGGAGCTTCGGCAGCGCTGAGAAGCATAGCTCCC
TTGCGAGGCCTGCTATGCCGGGATTTTCTTCCGGCGAAGAGTGCGCCGGA
GGTGACGATTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14891:116..676+

>mRNA_H-canaliculatus_F_contig14891.3689.1 ID=mRNA_H-canaliculatus_F_contig14891.3689.1|Name=mRNA_H-canaliculatus_F_contig14891.3689.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=948bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14891:116..676+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTTTTCGGTCACACCTTCTCCTTTCGCTCTGAGGAGAACATCACACC
TAGCCACTCCATCAGGCCAGTCAGCGCTCGGCAAGCGCGGGCGGTCAACA
GGGAAGGTTCGGCAGCCGGTGGGCGGGGTGGGAGCCTCGCCAAGGTAAGG
CGCGCCCGCGGCGGACGGGGCAGGGCTTCACGAGCTGGAAAGGGAGCAGC
AGCGGTCGCACCCGCAGATTCGCGGCCGCCACTGGTGCCATCTGCGCTTC
GCTCCTCTGCGCGCCGGAAGGAGCAGGTCGGCAAGGAACGACACGGAGCT
GCCCAGGCCCTGAACGGGCTGCAAGCCGCTGCTTCGCCGCCGCCATCGCC
TCCGACTCGTGGAGGGCTGCCGGTCGCACTAGGAGCTTGCGCGTCTGCCG
GGAAGAGGTCGGCAGGCGGACTACTGCAGCGCCACGGGGGATCCTATGCG
AACATGGAGCTTCGGCAGCGCTGAATGTTTTTCGGTCACACCTTCTCCTT
TCGCTCTGAGGAGAACATCACACCTAGCCACTCCATCAGGCCAGTCAGCG
CTCGGCAAGCGCGGGCGGTCAACAGGGAAGGTTCGGCAGCCGGTGGGCGG
GGTGGGAGCCTCGCCAAGGTAAGGCGCGCCCGCGGCGGACGGGGCAGGGC
TTCACGAGCTGGAAAGGGAGCAGCAGCGGTCGCACCCGCAGATTCGCGGC
CGCCACTGGTGCCATCTGCGCTTCGCTCCTCTGCGCGCCGGAAGGAGCAG
GTCGGCAAGGAACGACACGGAGCTGCCCAGGCCCTGAACGGGCTGCAAGC
CGCTGCTTCGCCGCCGCCATCGCCTCCGACTCGTGGAGGGCTGCCGGTCG
CACTAGGAGCTTGCGCGTCTGCCGGGAAGAGGTCGGCAGGCGGACTACTG
CAGCGCCACGGGGGATCCTATGCGAACATGGAGCTTCGGCAGCGCTGA
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