mRNA_H-canaliculatus_F_contig1489.3687.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1489.3687.1
Unique NamemRNA_H-canaliculatus_F_contig1489.3687.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1489.3687.1 vs. uniprot
Match: A0A6H5KDC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC5_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.710e-5
Identity = 58/158 (36.71%), Postives = 66/158 (41.77%), Query Frame = 2 
Query:  158 YRRLIDEQRFELEELKRAARDASPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASNPRPHVFDWMIY----GRRDSGKNFEVSRQSLEAVAAGRSGDHDGSGTAEGARYVAGAGGDGRRRYSKVDVPGSSLLAAATRDERKQKSGDG 619
            Y RLI EQRFELE+LKRAAR+ASPSS                                       SN RP +     +    G  DSG     +    E  A GR   H GS TA+G R   GA G   +RY+ V   G   LAA TR ER  KS  G
Sbjct:   38 YHRLIKEQRFELEQLKRAAREASPSSKHALERPSSATLNDAEDTLPPSP---------------TSNIRPRIVHSDTHASGGGGGDSGCETGSTSYVGELSAGGR--HHYGSSTADGDRLGGGAEG---QRYAGVGDVGGGFLAAITR-ERTDKSRSG 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1489.3687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KDC5_9PHAE2.710e-536.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1489contigH-canaliculatus_F_contig1489:20648..22578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size737
Cds size711
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1489.3687.1prot_H-canaliculatus_F_contig1489.3687.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1489 20673..22578 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929229.832144-UTR-H-canaliculatus_F_contig1489:20647..206721622929229.832144-UTR-H-canaliculatus_F_contig1489:20647..20672Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1489 20648..20672 +
1696845726.8102255-UTR-H-canaliculatus_F_contig1489:20647..206721696845726.8102255-UTR-H-canaliculatus_F_contig1489:20647..20672Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1489 20648..20672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929229.8441932-CDS-H-canaliculatus_F_contig1489:20672..208841622929229.8441932-CDS-H-canaliculatus_F_contig1489:20672..20884Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 20673..20884 +
1696845726.822016-CDS-H-canaliculatus_F_contig1489:20672..208841696845726.822016-CDS-H-canaliculatus_F_contig1489:20672..20884Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 20673..20884 +
1622929229.8604298-CDS-H-canaliculatus_F_contig1489:22079..225781622929229.8604298-CDS-H-canaliculatus_F_contig1489:22079..22578Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 22080..22578 +
1696845726.831305-CDS-H-canaliculatus_F_contig1489:22079..225781696845726.831305-CDS-H-canaliculatus_F_contig1489:22079..22578Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 22080..22578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1489.3687.1

>prot_H-canaliculatus_F_contig1489.3687.1 ID=prot_H-canaliculatus_F_contig1489.3687.1|Name=mRNA_H-canaliculatus_F_contig1489.3687.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=237bp
MAKYARDYRYDTDNPSDDGEKKELAAVGDESAGGDPGEGSAGIDYRRLID
EQRFELEELKRAARDASPSSSSRHPEQASSAAADVTAAVAPPTAASDGES
QQLPPPPPASNPRPHVFDWMIYGRRDSGKNFEVSRQSLEAVAAGRSGDHD
GSGTAEGARYVAGAGGDGRRRYSKVDVPGSSLLAAATRDERKQKSGDGDA
ASPLGVHFAGGSGARAAAGGQSGAGESNGDGGRLGRG
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mRNA from alignment at H-canaliculatus_F_contig1489:20648..22578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1489.3687.1 ID=mRNA_H-canaliculatus_F_contig1489.3687.1|Name=mRNA_H-canaliculatus_F_contig1489.3687.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1931bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1489:20648..22578+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCAGTGTCGGTGCTGGTTGCGGCATGGCAAAGTACGCGCGAGATTATC
GATACGATACGGATAATCCCTCGGATGACGGCGAGAAGAAAGAGCTAGCT
GCTGTCGGCGATGAGTCCGCTGGTGGTGATCCTGGGGAGGGCAGCGCCGG
CATAGATTATCGCCGTTTGATAGATGAGCAACGGTTCGAGCTCGAGGAGC
TCAAGAGAGCAGCAAGAGACGCGTCCCCCAGCAGCAGGTGATTGGGTGGG
ATTCCGCGGCAAACCAAATGCTTTACGCGTGTTTACTGCCCGGTGATACT
CTCTCGCGGTGTTGATACGAGGTAGAGGTTCAAGCAGGTTTTTGAAAACA
GGCGTGGAAGGGGAACGTGAAAATCTCCAACAGAGCCCCTACGGAGACAG
CATCTTCACCGAGGAGGACTACTGTATGACAACAGAGTAGCAGTGTTGCA
CCCTGCTGGACACCAATTACCGAGGAATTCTTCGCGGCTCAGCGGAAGGG
ATTTGTTTGCCGACAGTAGCAGCGGCAGCGTCGGCGGCGAAAACGAAAAG
GCTCCTCGAAAAGTGCCACGACGACCACCGCCGTGACAGCATCCAATCTG
ACGCAATGGCAGTTGAGAAGTACAAGGAACCAGGCATCAACACAATACTT
GTGCCTGTACGTTGTAGCTGGACAGCAGCTGCCTGCCGCTCGATGAGCAC
AGCATTTGCCATCCGGCAGCGGCAGGAGTGGTCATCTGTATCGCGCCCGG
AAAAGCCAGCCAAGTTCTTCTTGTTCATTGGTAATTAATGTATGCTCATG
GCAAGACACTCGAATCTCTACAGTACCTGGTATTAATAGCTGGTTTTATT
CCCCAGCGGTGCCTGTATGTTGACCAACGTTTGAACGTCGGCACTGGCTC
TGTGCGAGTTTGCAACACTGATGACTACAGAAGCTGTGAAACGCAGTCCG
CGTGTGAGAATTCCGCAAGGGTCGGCTGCCGGACCGTGATCAGTCGCCTT
TATGCAACAAAGTCAACAACACCGAAGGAATACTCACCTGAGACACTCTG
TCCATCTTAAGGGGCTTTTGTTAATTCCATTCAGTGAGGGTTTCATTCGA
GTGACAGGATGAAATTATGTATCAGTAGGCAAGTGGTGGACAAAAACGTG
AAATACATAGGAGTCGCTTTATTCTTCTTCTTCTTACTGGGCCGACGCAC
ATGAATATTACTTCAAAGTAGAGGATAGCTTCGATGAAAACGAACAAAAT
GTCCTCCTTTTCGTGGACAGCCTGAAAGGTGCTTGGGCCGGCAGGCGGCA
GTTGACACAAGTTTACCGCAATCTTGCGCCGTATCCCGCGAGCTATGCTT
GATCGATTTGCATCCGGCGCTTTGCTAACCTCTTCGCCGCCATTCCCGCC
CCCTGTTCTTGAAAACGGTTCTTGTACCCAAGTTCTCGACATCCGGAACA
AGCTTCTTCCGCAGCCGCCGACGTCACTGCAGCCGTCGCGCCACCGACGG
CAGCTTCCGACGGCGAATCGCAACAGCTTCCACCGCCGCCGCCCGCGAGC
AATCCCCGGCCCCACGTGTTCGATTGGATGATCTACGGCAGACGCGATTC
CGGCAAAAACTTCGAAGTATCACGGCAGTCCCTCGAAGCAGTGGCGGCAG
GAAGGAGTGGGGACCACGACGGGAGCGGTACCGCCGAAGGCGCTCGCTAC
GTCGCCGGGGCTGGAGGAGACGGCAGACGGCGGTACTCGAAGGTCGATGT
TCCGGGCAGCAGTTTACTGGCGGCGGCCACACGCGACGAGCGGAAACAAA
AGTCGGGGGACGGAGACGCTGCTTCACCGCTCGGGGTGCATTTCGCGGGA
GGAAGCGGGGCGAGAGCCGCCGCCGGGGGGCAGTCGGGAGCGGGCGAGAG
CAACGGCGACGGCGGGCGTCTTGGCCGTGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1489:20648..22578+

>mRNA_H-canaliculatus_F_contig1489.3687.1 ID=mRNA_H-canaliculatus_F_contig1489.3687.1|Name=mRNA_H-canaliculatus_F_contig1489.3687.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1422bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1489:20648..22578+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCAAAGTACGCGCGAGATTATCGATACGATACGGATAATCCCTCGGA
TGACGGCGAGAAGAAAGAGCTAGCTGCTGTCGGCGATGAGTCCGCTGGTG
GTGATCCTGGGGAGGGCAGCGCCGGCATAGATTATCGCCGTTTGATAGAT
GAGCAACGGTTCGAGCTCGAGGAGCTCAAGAGAGCAGCAAGAGACGCGTC
CCCCAGCAGCAGATGGCAAAGTACGCGCGAGATTATCGATACGATACGGA
TAATCCCTCGGATGACGGCGAGAAGAAAGAGCTAGCTGCTGTCGGCGATG
AGTCCGCTGGTGGTGATCCTGGGGAGGGCAGCGCCGGCATAGATTATCGC
CGTTTGATAGATGAGCAACGGTTCGAGCTCGAGGAGCTCAAGAGAGCAGC
AAGAGACGCGTCCCCCAGCAGCAGTTCTCGACATCCGGAACAAGCTTCTT
CCGCAGCCGCCGACGTCACTGCAGCCGTCGCGCCACCGACGGCAGCTTCC
GACGGCGAATCGCAACAGCTTCCACCGCCGCCGCCCGCGAGCAATCCCCG
GCCCCACGTGTTCGATTGGATGATCTACGGCAGACGCGATTCCGGCAAAA
ACTTCGAAGTATCACGGCAGTCCCTCGAAGCAGTGGCGGCAGGAAGGAGT
GGGGACCACGACGGGAGCGGTACCGCCGAAGGCGCTCGCTACGTCGCCGG
GGCTGGAGGAGACGGCAGACGGCGGTACTCGAAGGTCGATGTTCCGGGCA
GCAGTTTACTGGCGGCGGCCACACGCGACGAGCGGAAACAAAAGTCGGGG
GACGGAGACGCTGCTTCACCGCTCGGGGTGCATTTCGCGGGAGGAAGCGG
GGCGAGAGCCGCCGCCGGGGGGCAGTCGGGAGCGGGCGAGAGCAACGGCG
ACGGCGGGCGTCTTGGCCGTGGCTTCTCGACATCCGGAACAAGCTTCTTC
CGCAGCCGCCGACGTCACTGCAGCCGTCGCGCCACCGACGGCAGCTTCCG
ACGGCGAATCGCAACAGCTTCCACCGCCGCCGCCCGCGAGCAATCCCCGG
CCCCACGTGTTCGATTGGATGATCTACGGCAGACGCGATTCCGGCAAAAA
CTTCGAAGTATCACGGCAGTCCCTCGAAGCAGTGGCGGCAGGAAGGAGTG
GGGACCACGACGGGAGCGGTACCGCCGAAGGCGCTCGCTACGTCGCCGGG
GCTGGAGGAGACGGCAGACGGCGGTACTCGAAGGTCGATGTTCCGGGCAG
CAGTTTACTGGCGGCGGCCACACGCGACGAGCGGAAACAAAAGTCGGGGG
ACGGAGACGCTGCTTCACCGCTCGGGGTGCATTTCGCGGGAGGAAGCGGG
GCGAGAGCCGCCGCCGGGGGGCAGTCGGGAGCGGGCGAGAGCAACGGCGA
CGGCGGGCGTCTTGGCCGTGGC
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