mRNA_H-canaliculatus_F_contig1489.3686.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1489.3686.1
Unique NamemRNA_H-canaliculatus_F_contig1489.3686.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1489.3686.1 vs. uniprot
Match: D8LTT3_ECTSI (Eukaryotic translation initiation factor 4E-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTT3_ECTSI)

HSP 1 Score: 390 bits (1001), Expect = 3.240e-131
Identity = 182/194 (93.81%), Postives = 187/194 (96.39%), Query Frame = 1 
Query:   28 MANGNTEQLHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGTMRKKVGDRVIDSYSIFKKGIKPEWESPANSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDDSTAVRLLERLKACLADRNLHEKHMPSFDWKGHGGR 609
            MANG+ EQLHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDG+MRKKVGDRVIDSYSIFKKGIKPEWE+P NS GGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSND +TA RLLERL+ACLADRNLHEK MPSFDWK HGGR
Sbjct:    1 MANGSAEQLHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRACLADRNLHEKLMPSFDWKAHGGR 194
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BLAST of mRNA_H-canaliculatus_F_contig1489.3686.1 vs. uniprot
Match: A0A835ZBP0_9STRA (Eukaryotic translation initiation factor 4E-like 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP0_9STRA)

HSP 1 Score: 263 bits (673), Expect = 6.410e-82
Identity = 115/182 (63.19%), Postives = 141/182 (77.47%), Query Frame = 1 
Query:   55 HPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGTMRKKVGDRVIDSYSIFKKGIKPEWESPANSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDDSTAVRLLERLKACLADRNLHEKHMPSFDWKGH 600
            HPLQN+WCIWEH+ +K+S+DWG +M SL EF TVEDFW+ YNN+PKPSQV FDG  RK+VGDR I+S+SIFKKGI+PEWE PAN++GGEW  R ++ P  LD  WE++VLGL+GET+D  DEICGARVVDKS+     YRFELWLR+ +  T  RL ERL +CLAD N   K +P F +K H
Sbjct:   11 HPLQNSWCIWEHEASKNSSDWGSNMTSLGEFNTVEDFWRFYNNIPKPSQVFFDGKSRKRVGDRQIESFSIFKKGIRPEWEDPANARGGEWSCRERLQPIVLDTLWESLVLGLIGETIDWADEICGARVVDKSRGKDTYYRFELWLRAREPGTTARLKERLLSCLADGNPSTKGLPDFSFKDH 192
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BLAST of mRNA_H-canaliculatus_F_contig1489.3686.1 vs. uniprot
Match: A0A7S2XVT5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVT5_9STRA)

HSP 1 Score: 208 bits (530), Expect = 9.400e-61
Identity = 91/187 (48.66%), Postives = 122/187 (65.24%), Query Frame = 1 
Query:   40 NTEQLHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGTMRKKVGDRVIDSYSIFKKGIKPEWESPANSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDDSTAVRLLERLKACLADRNLHEKHMPSFDWKGH 600
            N    HPL+NTW IWEH+  K+  DW  +MQ +  FATVEDFW  YN++PKPS + +DG  RK+VGDR ++S SIFK+GI PEWE P N++GGE+  R    P  LD  WEN+++G++GET+D  D I GARVVDKSK    VY+ ELW++S +      L   +   + D  + +K M  F+WK H
Sbjct:    4 NPGDTHPLENTWSIWEHRATKNQGDWAGNMQKICTFATVEDFWAYYNHIPKPSAIFYDGQTRKRVGDRQLESLSIFKEGINPEWEDPVNAKGGEFSCRKTFDPVTLDKLWENLLMGIIGETIDWADHISGARVVDKSKGTRAVYKLELWVKSKEMDANETLKSNMLNVIFD-GIEQKLMVDFEWKKH 189
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BLAST of mRNA_H-canaliculatus_F_contig1489.3686.1 vs. uniprot
Match: R1BIV2_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BIV2_EMIHU)

HSP 1 Score: 198 bits (503), Expect = 7.640e-57
Identity = 85/164 (51.83%), Postives = 113/164 (68.90%), Query Frame = 1 
Query:   55 HPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGTMRKKVGDRVIDSYSIFKKGIKPEWESPANSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDDSTAVRLLERLKACL 546
            H L++ W IWEH+    +  + D+M  L E ATVEDFW+ +NN+PKPS++ +DG  RKK   R ++++S+FKK IKPEWE PAN  G EW  R   T   LD FW ++VLG++GET+D GDEICGARVVDKS N   +YR ELW R NDD+ +  LL +++  L
Sbjct:    8 HFLESEWVIWEHRAPDKNKSYEDNMAKLCEVATVEDFWRAWNNIPKPSEIFYDGRTRKKFASRTVEAFSVFKKNIKPEWEDPANRSGAEWYCRRAFTMPQLDEFWLHIVLGMIGETLDAGDEICGARVVDKSVNGRTMYRLELWFRKNDDALSKELLAKMQEAL 171
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BLAST of mRNA_H-canaliculatus_F_contig1489.3686.1 vs. uniprot
Match: A0A7S0HHF8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HHF8_9EUKA)

HSP 1 Score: 192 bits (488), Expect = 6.710e-54
Identity = 85/165 (51.52%), Postives = 114/165 (69.09%), Query Frame = 1 
Query:   55 HPLQNTWCIWEHKVA-KSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGTMRKKVGDRVIDSYSIFKKGIKPEWESPANSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDDSTAVRLLERLKACL 546
            H L++ W +WEH+   K+S  + D+M  L EFAT+EDFW+++NN+PKPS + +DG  +KK  DR ++S+S+FKKG+KPEWE  AN  G EW  R       LD FW+++VLG+VGET+D  DEICGARVVDKS     +YR ELW R  D++ A  LLER+   L
Sbjct:   62 HFLESEWVMWEHRAPDKNSKSYEDNMAKLCEFATIEDFWRLWNNIPKPSAIFYDGRTKKKFKDRTVESFSLFKKGVKPEWEDAANRTGAEWFCRKTFPMPQLDSFWQDLVLGMVGETIDPADEICGARVVDKSSGTRCMYRLELWFRKKDETIAKELLERMNGQL 226
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BLAST of mRNA_H-canaliculatus_F_contig1489.3686.1 vs. uniprot
Match: A0A7S2CNW6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CNW6_9EUKA)

HSP 1 Score: 190 bits (483), Expect = 8.880e-54
Identity = 83/165 (50.30%), Postives = 112/165 (67.88%), Query Frame = 1 
Query:   55 HPLQNTWCIWEHKVA-KSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGTMRKKVGDRVIDSYSIFKKGIKPEWESPANSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDDSTAVRLLERLKACL 546
            H L++ W IWEH+   K+S  + D+M+ L E AT+EDFW+ +NN+PKPS + +DG  RKK  +R ++S+S+FKK IKPEWE P N  G EW  R     Q LD FW ++VLG++GET+D  D+ICGARVVDKS     +YR ELW +  DD+ A  LL R+ + L
Sbjct:   17 HFLESEWVIWEHRSPDKNSKSYEDNMEKLCEVATIEDFWRAFNNIPKPSAIFYDGRTRKKFANRSVESFSLFKKNIKPEWEDPMNRSGAEWFCRKTFASQQLDEFWRDLVLGMIGETIDPADDICGARVVDKSSGTRQMYRLELWFKRKDDAVAQELLNRMNSHL 181
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BLAST of mRNA_H-canaliculatus_F_contig1489.3686.1 vs. uniprot
Match: A0A2R5GD67_9STRA (Eukaryotic translation initiation factor 4E n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GD67_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.830e-53
Identity = 92/185 (49.73%), Postives = 114/185 (61.62%), Query Frame = 1 
Query:   52 LHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGTM-RKKVGDRVIDSYSIFKKGIKPEWESPANSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDDSTAVRLLERLKACLADRNLHEKHMPSFDWKGHG 603
            LHPLQNTW  WEH+   + +D+G  M  L EF TVEDFW+  NN+P+PS+V +      KK  DR ID +S+FK GI+PEWE  AN  GGE+  R  M P  LD  WE ++LGLVGET+D GDEICG RVVDKSK+N   YR E+W RS D      L  +++ CL    L E    +     HG
Sbjct:   10 LHPLQNTWAFWEHRKGGTGSDYGSKMFQLGEFETVEDFWRFKNNLPQPSEVFYTPQSGHKKFVDREIDGFSMFKGGIRPEWEDKANMYGGEFFCRQTMAPAQLDNAWEKLLLGLVGETIDNGDEICGVRVVDKSKSNRPTYRLEMWFRSRDKDVLEHLRTQVQKCLGANLLKEYMEHNVAMNTHG 194
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BLAST of mRNA_H-canaliculatus_F_contig1489.3686.1 vs. uniprot
Match: A0A7S3EX75_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EX75_9EUKA)

HSP 1 Score: 189 bits (481), Expect = 2.240e-53
Identity = 85/166 (51.20%), Postives = 113/166 (68.07%), Query Frame = 1 
Query:   52 LHPLQNTWCIWEHKVA-KSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGTMRKKVGDRVIDSYSIFKKGIKPEWESPANSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDDSTAVRLLERLKACL 546
            LH L++ W +WEH+   K+S  + D+M+ L E ATVEDFW  +NN+PKPSQ+ FDG  +K+  +R ++S+S+FKK IKPEWE PAN  G EW  R     Q LD FW+N+ LG++GET+D GDEICGARVVDK      +YR ELW +  D   A  LL R+++ L
Sbjct:   24 LHFLESEWVLWEHRSPDKNSKSYEDNMEKLCEMATVEDFWCAWNNIPKPSQIFFDGKTKKRFANRSVESFSLFKKNIKPEWEDPANRAGAEWFCRRNFPMQQLDDFWQNLALGMIGETIDHGDEICGARVVDKCAGGRCMYRLELWFKKKDQGIADELLGRMQSVL 189
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BLAST of mRNA_H-canaliculatus_F_contig1489.3686.1 vs. uniprot
Match: A0A1V9ZKJ8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKJ8_9STRA)

HSP 1 Score: 185 bits (469), Expect = 8.100e-52
Identity = 81/176 (46.02%), Postives = 122/176 (69.32%), Query Frame = 1 
Query:   43 TEQLHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGTMRKKVGDRVIDSYSIFKKGIKPEWESPANSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDDSTAVRLLERLKACLADRNLHEK 570
            T+++HPLQ+ W IWE + + +  ++GD++  L  F++VE+FW  +NN+PKPSQV+ DG  +KK  DR + S+++FK+GI+PEWE  AN  GGEWQ   ++ P  LD  W+ +VLG++GET+D  +EI GARVV K+K + + YRFELWLRS D + A  + + + AC+      +K
Sbjct:    2 TDEVHPLQSAWSIWELRES-TKGNYGDNLHRLCTFSSVEEFWGYWNNIPKPSQVLNDGIAKKKFSDRSVQSFAVFKEGIRPEWEDSANMNGGEWQLSIRLQPGPLDELWDKVVLGMIGETIDPTNEITGARVVHKNKKDTHTYRFELWLRSRDRNLADEIRKNMVACMNQDGSSQK 176
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BLAST of mRNA_H-canaliculatus_F_contig1489.3686.1 vs. uniprot
Match: A0A7S2LDB2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LDB2_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.720e-51
Identity = 86/202 (42.57%), Postives = 131/202 (64.85%), Query Frame = 1 
Query:   25 KMANGNTEQLHPLQNTWCIWEHKVA--KSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGTMRKKVG--DRVIDSYSIFKKGIKPEWESPANSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVD---VGDEICGARVVDKSKNNHNVYRFELWLRSNDDSTAVRLLERLKACLAD---RNLHEKHMPSFDWKGH 600
            K   GN ++LHPL++ W +W+H     K +  W DSM+ L  F+T+EDFW+ +N+VP+PS++ +DG  +KKVG  + VI+ YS+FKKGI+PEW  P N  GGEW  R+ +    LDLFW+N+VLG++GE+++   +G  I G RVVDK KN + +++ ELW+ + D     ++  +L  CL +    +   K+ P F+WK H
Sbjct:   12 KAMEGNQKKLHPLEHEWVLWKHIACHKKDANAWKDSMKELGTFSTIEDFWRYFNHVPRPSEIFYDGESKKKVGMNNEVIEEYSLFKKGIEPEWGDPLNKPGGEWFWRTHLDSDVLDLFWQNLVLGVIGESIEEASLGLHINGVRVVDKGKN-YPIFKIELWMDTKDVEVREKIRTKLVECLTNGLPAHKFAKNNPRFEWKDH 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1489.3686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTT3_ECTSI3.240e-13193.81Eukaryotic translation initiation factor 4E-like 1... [more]
A0A835ZBP0_9STRA6.410e-8263.19Eukaryotic translation initiation factor 4E-like 1... [more]
A0A7S2XVT5_9STRA9.400e-6148.66Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
R1BIV2_EMIHU7.640e-5751.83Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S0HHF8_9EUKA6.710e-5451.52Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S2CNW6_9EUKA8.880e-5450.30Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A2R5GD67_9STRA1.830e-5349.73Eukaryotic translation initiation factor 4E n=1 Ta... [more]
A0A7S3EX75_9EUKA2.240e-5351.20Hypothetical protein n=2 Tax=Haptolina ericina Tax... [more]
A0A1V9ZKJ8_9STRA8.100e-5246.02Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2LDB2_9STRA1.720e-5142.57Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1489contigH-canaliculatus_F_contig1489:15095..20489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score393.7
Seed ortholog evalue5.1e-107
Seed eggNOG ortholog2880.D8LTT3
KEGG rclassRC00005,RC00059
KEGG koko:K03259,ko:K03715,ko:K07521
KEGG ReactionR02691
KEGG Pathwayko00561,ko01100,ko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04360,ko04910,map00561,map01100,map01521,map03013,map04066,map04150,map04151,map04211,map04360,map04910
KEGG ModuleM00428
GOsGO:0000082,GO:0000278,GO:0000339,GO:0000340,GO:0000932,GO:0001662,GO:0002209,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005845,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0007049,GO:0007275,GO:0007346,GO:0007399,GO:0007610,GO:0008134,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009410,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010721,GO:0014070,GO:0016281,GO:0016442,GO:0017148,GO:0019222,GO:0019538,GO:0019827,GO:0019899,GO:0022008,GO:0022402,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031332,GO:0031369,GO:0031370,GO:0031960,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033391,GO:0033555,GO:0033993,GO:0034248,GO:0034249,GO:0034518,GO:0034641,GO:0034645,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0042596,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045787,GO:0045931,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051384,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065007,GO:0070491,GO:0070887,GO:0071310,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0080090,GO:0097159,GO:0097327,GO:0098727,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1903047,GO:1990904,GO:2000026,GO:2000112,GO:2000113
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5053@1,KOG1670@2759
EC2.4.1.46
COG Functional cat.J
CAZyGT28
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03012,ko03019,ko04516
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioneukaryotic translation initiation factor 4E- like 1
Ec32 orthologEc-28_002900.1
Exons6
Model size1714
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1489.3686.1prot_H-canaliculatus_F_contig1489.3686.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1489 16213..20462 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.5490978-UTR-H-canaliculatus_F_contig1489:15094..157301622929230.5490978-UTR-H-canaliculatus_F_contig1489:15094..15730Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1489 15095..15730 -
1696845727.0815203-UTR-H-canaliculatus_F_contig1489:15094..157301696845727.0815203-UTR-H-canaliculatus_F_contig1489:15094..15730Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1489 15095..15730 -
1622929230.5654423-UTR-H-canaliculatus_F_contig1489:15746..162121622929230.5654423-UTR-H-canaliculatus_F_contig1489:15746..16212Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1489 15747..16212 -
1696845727.0950816-UTR-H-canaliculatus_F_contig1489:15746..162121696845727.0950816-UTR-H-canaliculatus_F_contig1489:15746..16212Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1489 15747..16212 -
1622929230.6715024-UTR-H-canaliculatus_F_contig1489:20462..204891622929230.6715024-UTR-H-canaliculatus_F_contig1489:20462..20489Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1489 20463..20489 -
1696845727.14974-UTR-H-canaliculatus_F_contig1489:20462..204891696845727.14974-UTR-H-canaliculatus_F_contig1489:20462..20489Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1489 20463..20489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.5821798-CDS-H-canaliculatus_F_contig1489:16212..163061622929230.5821798-CDS-H-canaliculatus_F_contig1489:16212..16306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 16213..16306 -
1696845727.1042032-CDS-H-canaliculatus_F_contig1489:16212..163061696845727.1042032-CDS-H-canaliculatus_F_contig1489:16212..16306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 16213..16306 -
1622929230.5994174-CDS-H-canaliculatus_F_contig1489:16963..171121622929230.5994174-CDS-H-canaliculatus_F_contig1489:16963..17112Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 16964..17112 -
1696845727.1128771-CDS-H-canaliculatus_F_contig1489:16963..171121696845727.1128771-CDS-H-canaliculatus_F_contig1489:16963..17112Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 16964..17112 -
1622929230.6177566-CDS-H-canaliculatus_F_contig1489:17764..179321622929230.6177566-CDS-H-canaliculatus_F_contig1489:17764..17932Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 17765..17932 -
1696845727.1215682-CDS-H-canaliculatus_F_contig1489:17764..179321696845727.1215682-CDS-H-canaliculatus_F_contig1489:17764..17932Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 17765..17932 -
1622929230.6357234-CDS-H-canaliculatus_F_contig1489:18697..188051622929230.6357234-CDS-H-canaliculatus_F_contig1489:18697..18805Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 18698..18805 -
1696845727.129787-CDS-H-canaliculatus_F_contig1489:18697..188051696845727.129787-CDS-H-canaliculatus_F_contig1489:18697..18805Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 18698..18805 -
1622929230.6528325-CDS-H-canaliculatus_F_contig1489:20396..204621622929230.6528325-CDS-H-canaliculatus_F_contig1489:20396..20462Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 20397..20462 -
1696845727.1394868-CDS-H-canaliculatus_F_contig1489:20396..204621696845727.1394868-CDS-H-canaliculatus_F_contig1489:20396..20462Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 20397..20462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1489.3686.1

>prot_H-canaliculatus_F_contig1489.3686.1 ID=prot_H-canaliculatus_F_contig1489.3686.1|Name=mRNA_H-canaliculatus_F_contig1489.3686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=195bp
MANGNTEQLHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVY
NNVPKPSQVMFDGTMRKKVGDRVIDSYSIFKKGIKPEWESPANSQGGEWQ
SRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRF
ELWLRSNDDSTAVRLLERLKACLADRNLHEKHMPSFDWKGHGGR*
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mRNA from alignment at H-canaliculatus_F_contig1489:15095..20489-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1489.3686.1 ID=mRNA_H-canaliculatus_F_contig1489.3686.1|Name=mRNA_H-canaliculatus_F_contig1489.3686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5395bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1489:15095..20489- (Hapterophycus canaliculatus Oshoro5f female)
AGCAGCAGCACCATCAGCAACACAAAGATGGCGAATGGGAATACGGAGCA
GCTCCACCCACTCCAAAACACATGGTGCATTTGGGAACACAAGGTACGGG
TTTGACTTCTGTGAGTTCAGACAGCAAGTCCCTGATTTTACCTGCGGTTG
TCCATCGCACGTAACTTAATGCGAGGAAAGGAAGAGCTTCCTTCAGAATG
GATCGCCACCCTATTATCCTCTCCAGCGCTTCTACGACAGCGATGAGGGC
CTGCTTTCATGTGGACAATCGTTTGCGGTGTCTGCTGTTCGAGCGTCATG
GATCAACATCACCTCGTCGTTAATGACGGTAGATACCACCCTCTCTTCCT
ACTTTTTCCGAGTACAGGCAGCACTCCCTTACGTAGTTTTGGGACGCCCG
GGTGAGACTTTGATAGAAAGCTTCGGCCATAGTATAGAAACGACTCCCGA
ATACCGACAACGACTACCCATGTATATGGAAAGGTGGCGGCATGCGGAGT
AATGGACATACTTTCCGTTCTGCTGAAGAAGGACGTGCCGTAACTCGGTG
TCAGAGCACAGCCCCTTGTGTTGTAAAATCAAAACATGCGGACCTGCCCA
ATTTCGAACGGCGTCGGGGGTGTCGTGCGCGCACGGTGGCGTTCCAGCTA
CCAGCTCCCTCCTTCGTTTGCCGACCCGTTACACGAAAGCTGGACCCGTC
GGCCCTCCAGCGTGTCAAACAGCAGCATGCGGTTCTTATCTGGTGTATCT
TCCTGGTCCTTGGTGATGGCAGCCTTCAGAAACTCAAACTCGCACCCTTC
TCTTCCTTGCAGCTGGCGACGCAATCTTTCCCGCAGATGTGAAATTACAA
CTCCCGTGGGCCGTCCTCTGGACGACCAAGATTTTCCGGCCTGAATGATG
GAGAAAGATGTTTCGTTTCCAAGAACAAGCTCGTCGCTCCTCCGAAAAAC
AAGTCGATAGCCAGAACCGCAGCGACGGCCGGGCCGCGGCTGCGGTACCA
ACTAGGTCGTCGAACCCCTGGCTTGTTGCCGATTCGGCGCTTTCGGAAAG
TGGTAGAAAAAGCTGCTGTGCTTGTGTCGCTTGCGGCTTGATGTGGCAGT
GCTCTTGTGCGAGGAGCTCTCTCTACCTACCTCTACCCACACACCGGCCC
GCACAAAAGTTGTCATGTCCTCTCGCCCATCAGCGGAGTTTTGGACGGGA
TCAAAAAGGAAGAAGGCGTTGGCAGCGGAAAGTAGAGGCTCGGGCCCTTA
CTGCTGGCCAGAGGAAGATCGTTTACTCGGGGGTTCGCGCCGCGTCTCGC
CGCCGAACTCCGCCGGGGGAGGCAGATCCACGAGTGCCCGTGCACAAGCT
TTTTTTCGGCAGATGGCGGTACACCGCTGTGTCTCAACCCCCTGGACGGG
GAGATAGATTCAGTCTGCTCGTACACGACGCCGTTTTGGTAGCGGAGTGC
AGGAAGGGAAAGCGGCAGGACAAGACCGCTCGCACGAATGATACTTTAGG
TTTGTGCCGTCTGTGCCCCACGCAATCCACGAGAGAGCGTGTGATTACGC
TTCCCGCCGAGTTTTCCGATGCTCAGGCCTAAACCTCCTGGATCCATTTG
TGACACTAGGTAATATGAAAATATATTCTTCCGGGCGCGGGCTTGACGTC
GGGACCAAGCTAACGAGAATCGCAACGACCACAGGTGGCAAAATCGAGCG
CCGACTGGGGAGACAGCATGCAGAGCCTGGCGGAGTTCGCCACAGTGGAG
GACTTCTGGAAGGTCTACAATAACGTTCCCAAGCCCAGCCAGGTGAGGGG
CAACGCGGCATCTCGCGCGGCCGAGGACACAAGCGCAGGCACGCGCACGT
TGTGTTGCAGTCGCTCTCGAAGTTTCCGCGCGCAGCTAGAGAGCTTCAAG
GCCCTGTTCATGTTTGGTGGCGGTGCGCCGGGTGGTGGCTTGCCACGACG
TGGTCGGATGACCACGCTCGTCGAGCCCGGCCCGTCACTTCGAGCATCAT
TTTTATTTTCTGCTGCGACCTGCGCGTACCGAAGTTCCATGAGGACGCTT
AGGGAGGCACTGGTCTGTGTTTCTGTTGGTTTTCTCCGAGTCGGCAGGGA
GTGCTGTTCCACGCAGGTTTGGGAAAAGTCAAAGCTTGGTCGTACGAGGG
AGCGTGTTTTTTTTTCGGTGCGTGCGCGGTGTGTTGTCGAAGGAACTAGA
GCTCGACAGGACGAGCGCTTGTGCGCAACGAACGATCGCACGATGGGAAG
CATTCCTCCAAAGTCTCTGGTGCCTACGGGGAAAAGCACGTGTGCGTATT
TCGTGTTCAGCCGGGAAACTTGTCCGAACGCTGGTCCCCGAACGCTCCCA
GCGTCGGCGAGCACAAACCGCACCGGATATGGTAGAGCAAGGCGTTCGGA
ATGCTGCTTTGGATTGCGCGTACGCGCCGCGAGATCACCAAGCACACCGG
GAGTTCATCGATCGAAGAAGAGGAGGACGGGCTCGCCTTCCTTGCGTCCG
CCGCCCTTAACCTCCCGCCGCTGCTGCTGCGTCCGCTGCCGCGCCCGGCT
GCACCAGGTGATGTTCGACGGCACGATGCGCAAGAAGGTCGGGGACCGCG
TGATCGACTCGTACAGCATCTTCAAGAAGGGCATCAAGCCCGAGTGGGAG
TCGCCCGCGAACAGCCAGGGCGGGGAGTGGCAGAGCCGGAGTAAGATGAC
TCCCCAGGCGCTGGACTTGTTCTGGGTGAGGCCTGGTTGCGGCGGCATCC
GTGGGTGCCCATGGCCTAGAGGCGGCGAAGAAATGCATACCTGGTACAAA
GCATGAAACACACTAGATCGACCGCCTTTTTCCATCCATCGCGCTCGTGA
TACATGTGCTATTGTGGCGGCAGTCCGGGCATGGATGGTGCTGAGTGGGG
CGGGCGCGGAGGTCGCACACTAGCGTTCGACCGGTACAGCAGTCGTGTGT
ATTTCCTCGTTCCCCAACATGTTTCCGGAAAATGACGTTGTGCCTCCGGC
GCTGCCGGCATAGTGCGTGCATCCACGTCGCTCAGGTCGCATCAAGTCCC
CACTGCTTCGTGGAACAGATTCGGGAAAGGCTTTGGACACGCTTGATGTG
GTTCCTAAGAGGCCGTCGTTCGAACGGCGTCGTGAAAAGTTCGCATCCGT
GCATTTTGGCTGGAGTGGCAAAGAACGGACTAGGGCTGGTGGGGCAATCG
CTGTGCCTTTGACCTGTTCATTGATCTTGTTGTGTTTCGCCCTCGCTTAC
TTCCTACCGGGAACGTCCTCCGATTCGGCAAACACCCTCACGACTCCTCA
TTTCTGGCGTAGGAAAACAAGTCGCAGGGGCTGACGTGGTGGAATATTAC
TCTCGCGTACATTCTGCTTGGCGACAGGAAAATATGGTTTTGGGGCTGGT
GGGCGAGACGGTCGACGTGGGTGACGAGATCTGCGGGGCACGGGTAGTGG
ACAAGAGCAAGAACAACCACAACGTCTACCGATTCGAGCTGTGGCTCAGG
AGCAACGACGACAGCACCGCGGTCAGGTGAGCACCGAAGTCTCCGATTTT
TCAAGAGCTGTGTGGCTAGACGCACCATGTGGTGTGAATAGACGGAACGA
CTTGTTGAGCAACAAGGACGACAGCGAATCCTGGCCGCGACTGTGACGTG
CAGCTGGCGGGTCATGAGCTTCGTTTTTGTTGAAGACAAGATGTTGATCG
AGAAATCAAAGGCCCGAAAAGAACCGGGCACGACGAGACTGCTGTAAATA
TACTAGTCCGGTTTCAACTCCCAGCTATTGCCGACGGGGTACAAACACCG
ACGAGGTCTAGGCGCTGGTGCGACATCCCACGGCTCGTGTAAAGGTTTTC
CAACAATCACGCGGGCATGGAGACTGCAGACAGGTAGGTACAGGTAGGTG
TCGGAGAATTCACGGCCCTTCCGGACGCTTTACGTCTCTCCTGGCTGGCT
GTTCGCATCTTTCTTTGTCACCACAGCGGTCTCAAATCTCTGGTGGCGTT
AGGGCAGGCAGTGCTTGTTTGTGATATCGCTCCTCAAAGCGGAATAAAAC
GCTGGTAGTTGGTAAACCACAACGATCTTCGTGGCAACAACCAGGATCTA
GTTCTAGTGTCTCGTTCACGATGGCGCTACACCCTCATCGACTCACCCGC
TCGCTTTCCCGTCCCGAAAAAACGCCCGTGCAGGCTTCTCGAGCGTCTGA
AGGCGTGCCTGGCCGACAGAAACTTGCACGAGAAGCACATGCCAAGCTTC
GACTGGAAGGGGCACGGAGGGCGGTAATGGTTGAAGGCCGAACGCCGACA
AGACTGCTCAACCAGAACTCTGTTGATGTACTTTACTGCTGTTGACGAAG
AATGGAATCAGCTCAGGTGGATAAGCTCGCGTACGCGGCCCGTCAAAGAA
GGGCACGGGTACGAAGTGGATGCGGAGCATCGAGGGCACGAGCATCAATG
GCAAATGATTTTCCGGTAACACTTGATGGTACACACGCTCGCGCTCGATG
CTACTGGTGTCTCTTAAGGCGGGGCGGGAAACAAGTACCTAGGCTTGCCA
TTTGCTAGCCATGGACTTCGTTTCATGAAGGAAAGGGGGCGACACGGGGC
CGTTGGCGCGTCTTCCCAAATCGAGTTGTATCTTCAAAAGCCACGTGTAA
TGTTCCTTCTTCTTGGTAATCTATACTGGAGTAGTCCGCACAACGAGTCT
GAGCCTCTTAGCCTTGACCTACGGCGCGCGGGGCTTGCCTCTTACGGCGG
ATGCTTCTTTGGCGTCGTTGCTACAAGGCTCGCTGTGGAGGTCCCCTCTC
CGTTTTCGTTGTGCAGCAAGGTTTTCACGAGAAAGACTTCGCAACACCAA
GGGGATACCCTCCGCTGAGACAAATTAAAACTACTCGAGGATTTTTGTCG
AATTCCCTATCGTGAGGGTTCAGTATACTGCTGTAGGTGGGAAAGCATTT
TTAGCGTGTGAGCAGAAACAGACGGTGGTTATCATAGCCGGTACTTCATC
GCCATTCGGTTCCCCTGATCTAATGGCCGTTCGCAGGTCGCGGTAGATAC
GATCACCGCAGACAATTGAGTCTTTCCATCGCTGAGACGTTTGAATGCGC
ACGAGGCGCGCTTTGCTTTTCAAGCCACCAACATGGCTGGCTGCGTCACA
ACTTCCCCCTGTCAATCGTCGTTATCGCCGTGGTTCAGGCAGTGCCGTCT
GCGCTGTTGGCGTAGCTGGTGGCGCTGCCGATAGTGGTGGTACCTCGGTG
TTGTCTGGCTTGCACCTGGCTACGGCGACGATGACGCCCATGCGGCGCTG
ACCACGCCCAACCGCGCAGATACAGGGCGCCCATCGCGTTTTGAGTTGTG
AGCGTCTCTGCCGGGCCCCAAGGGTTCTCCACTCCGGCAGAGGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1489:15095..20489-

>mRNA_H-canaliculatus_F_contig1489.3686.1 ID=mRNA_H-canaliculatus_F_contig1489.3686.1|Name=mRNA_H-canaliculatus_F_contig1489.3686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1170bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1489:15095..20489- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGAATGGGAATACGGAGCAGCTCCACCCACTCCAAAACACATGGTG
CATTTGGGAACACAAGATGGCGAATGGGAATACGGAGCAGCTCCACCCAC
TCCAAAACACATGGTGCATTTGGGAACACAAGGTGGCAAAATCGAGCGCC
GACTGGGGAGACAGCATGCAGAGCCTGGCGGAGTTCGCCACAGTGGAGGA
CTTCTGGAAGGTCTACAATAACGTTCCCAAGCCCAGCCAGGTGGCAAAAT
CGAGCGCCGACTGGGGAGACAGCATGCAGAGCCTGGCGGAGTTCGCCACA
GTGGAGGACTTCTGGAAGGTCTACAATAACGTTCCCAAGCCCAGCCAGGT
GATGTTCGACGGCACGATGCGCAAGAAGGTCGGGGACCGCGTGATCGACT
CGTACAGCATCTTCAAGAAGGGCATCAAGCCCGAGTGGGAGTCGCCCGCG
AACAGCCAGGGCGGGGAGTGGCAGAGCCGGAGTAAGATGACTCCCCAGGC
GCTGGACTTGTTCTGGGTGATGTTCGACGGCACGATGCGCAAGAAGGTCG
GGGACCGCGTGATCGACTCGTACAGCATCTTCAAGAAGGGCATCAAGCCC
GAGTGGGAGTCGCCCGCGAACAGCCAGGGCGGGGAGTGGCAGAGCCGGAG
TAAGATGACTCCCCAGGCGCTGGACTTGTTCTGGGAAAATATGGTTTTGG
GGCTGGTGGGCGAGACGGTCGACGTGGGTGACGAGATCTGCGGGGCACGG
GTAGTGGACAAGAGCAAGAACAACCACAACGTCTACCGATTCGAGCTGTG
GCTCAGGAGCAACGACGACAGCACCGCGGTCAGGAAAATATGGTTTTGGG
GCTGGTGGGCGAGACGGTCGACGTGGGTGACGAGATCTGCGGGGCACGGG
TAGTGGACAAGAGCAAGAACAACCACAACGTCTACCGATTCGAGCTGTGG
CTCAGGAGCAACGACGACAGCACCGCGGTCAGGCTTCTCGAGCGTCTGAA
GGCGTGCCTGGCCGACAGAAACTTGCACGAGAAGCACATGCCAAGCTTCG
ACTGGAAGGGGCACGGAGGGCGGTAAGCTTCTCGAGCGTCTGAAGGCGTG
CCTGGCCGACAGAAACTTGCACGAGAAGCACATGCCAAGCTTCGACTGGA
AGGGGCACGGAGGGCGGTAA
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