mRNA_H-canaliculatus_F_contig1489.3685.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1489.3685.1 vs. uniprot
Match: A0A6H5KFI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI5_9PHAE) HSP 1 Score: 449 bits (1155), Expect = 7.410e-150 Identity = 245/328 (74.70%), Postives = 267/328 (81.40%), Query Frame = 1
Query: 220 CGTTSAVLTAVIACFAYAFLV-RNQQHQLEAEGGVGYELGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVQGLKLRAGDRVVDMATGTADVAIMISGELAKLEDAGGDRGSLPGKVYSEVVGIDPSANMLEVGRRKAAEAGLSSRVRLEIGDAQNLSDIADGSVDKLTMSFGIRNVPDRLKALREFRRIMATPTLTEPPTIEPGSEVEGAAKERGGAGDSDVAMGSSSVVAIMELQDPETGLLASASRAFIKYGAPVLGWLISGNGAEYGHLKNSILSFPSVLEWTALMEEAGKRQ-------GLEVFSHETMGFGTVHLYLARPR 1179
CG TSAVLTAV AC AYAF+ QQ + +EGG YELGSGKMFDSIAPRYDLINKVISLGLDMQWR+AMV+GL+LR GDRVVDMATGTADVAIMIS ELAKLE GDRG++ G V EV+GIDPSA MLEVGR K AEAGL SR+RL+IGDAQ+L+DIADGSVDKLTM+FGIRNVPDR KALRE RRIMATP L + GA + GGAG SSSVVAI+ELQDPE+GLLASASRAFIKYGAP+LGW++SGNGAEYGHLKNSIL FPSV EWTALME+AGK GLEVFSHETMGFGTVHLYLARPR
Sbjct: 4 CGATSAVLTAVAACVAYAFIFWGGQQQRSRSEGGGEYELGSGKMFDSIAPRYDLINKVISLGLDMQWRKAMVRGLELRDGDRVVDMATGTADVAIMISEELAKLEGTPGDRGTISGTVEPEVIGIDPSARMLEVGREKVAEAGLCSRIRLQIGDAQDLADIADGSVDKLTMAFGIRNVPDRPKALREIRRIMATPALD--------AGAHGATDDAGGAGGQ---ASSSSVVAILELQDPESGLLASASRAFIKYGAPLLGWVMSGNGAEYGHLKNSILRFPSVSEWTALMEDAGKIHLVAPLPPGLEVFSHETMGFGTVHLYLARPR 320
BLAST of mRNA_H-canaliculatus_F_contig1489.3685.1 vs. uniprot
Match: D8LTT5_ECTSI (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT5_ECTSI) HSP 1 Score: 356 bits (914), Expect = 1.850e-114 Identity = 195/253 (77.08%), Postives = 213/253 (84.19%), Query Frame = 1
Query: 346 MFDSIAPRYDLINKVISLGLDMQWRRAMVQGLKLRAGDRVVDMATGTADVAIMISGELAKLEDAGGDRGSLPGKVYSEVVGIDPSANMLEVGRRKAAEAGLSSRVRLEIGDAQNLSDIADGSVDKLTMSFGIRNVPDRLKALREFRRIMATPTLTEPPTIEPGSEVEGAAKERGGAGDSDVAMGSSSVVAIMELQDPETGLLASASRAFIKYGAPVLGWLISGNGAEYGHLKNSILSFPSVLEWTALMEEAGK 1104
MFDSIAPRYDLINKVISLGLDMQWRRAMV+GL LRAGDRVVDMATGTADVAIMIS ELAKLE G G++PG V EV+GIDPSA MLEVGR K AEAGLSSRVRL+IGDAQ+L+DIADGSVDKLTM+FGIRNVPDR KAL E RRIMATP L + +GA ++ GGAG SSSVVAI+ELQDPE+GLLASA+RAFIKYGAPVLGW++SGNGAEYGHLKNSIL FPSV EWTALM +AGK
Sbjct: 1 MFDSIAPRYDLINKVISLGLDMQWRRAMVRGLGLRAGDRVVDMATGTADVAIMISEELAKLE--GAPEGTIPGTVEPEVIGIDPSARMLEVGREKVAEAGLSSRVRLQIGDAQDLADIADGSVDKLTMAFGIRNVPDRSKALEEIRRIMATPALD--------AGAQGATEDAGGAGGH---ASSSSVVAILELQDPESGLLASATRAFIKYGAPVLGWVMSGNGAEYGHLKNSILRFPSVSEWTALMGDAGK 240
BLAST of mRNA_H-canaliculatus_F_contig1489.3685.1 vs. uniprot
Match: A0A835YHX6_9STRA (UbiE/COQ5 methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHX6_9STRA) HSP 1 Score: 207 bits (526), Expect = 9.190e-58 Identity = 127/284 (44.72%), Postives = 166/284 (58.45%), Query Frame = 1
Query: 331 LGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVQGLKLRAGDRVVDMATGTADVAIMISGELAKLEDAGGDRGSLPGKVYSE--VVGIDPSANMLEVGRRKAAEAGLSSRVRLEIGDAQNLSDIADGSVDKLTMSFGIRNVPDRLKALREFRRIMATPTLTEPPTIEPGSEVEGAAKERGGAGDSDVAMGSSSVVAIMELQDPETGLLASASRAFIKYGAPVLGWLISGNGAEYGHLKNSILSFPSVLEWTALMEEAGKRQGLEVFSHETMGFGTVHLYLARP 1176
LGSG MFDSIA +YD++N+ +SLG+DM WR+ ++Q L+L+ GDRV+D+ATGTADVAI+ L + +A GS + VVGIDPSANML GR K A GL V+L++GDAQ L ++++ S DK++MSFGIRNVPDR KALRE R+ A PG+ VAIM+L P TG+ A RA +K+ VLG L+SG +YGHL+ SI +FP W M +AG L V+ + G V LYLA P
Sbjct: 15 LGSGSMFDSIAGQYDIVNRFLSLGMDMSWRKILLQELQLQPGDRVLDLATGTADVAILEGEALRAMAEAAASSGSKGAGKQKKGMVVGIDPSANMLAHGRDKVAAKGLDGIVKLQLGDAQALKELSNRSFDKISMSFGIRNVPDRAKALREIHRVAA-----------PGA-----------------------TVAIMDLHAPTTGIFAPLGRAAVKFLPTVLG-LLSGAPDQYGHLERSIFAFPEPDAWQDAMRDAG----LPVYRAVPLCLGCVWLYLAHP 259
BLAST of mRNA_H-canaliculatus_F_contig1489.3685.1 vs. uniprot
Match: A0A7S2V4B4_9STRA (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B4_9STRA) HSP 1 Score: 205 bits (521), Expect = 1.100e-56 Identity = 126/289 (43.60%), Postives = 169/289 (58.48%), Query Frame = 1
Query: 328 ELGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVQGLKLRAGDRVVDMATGTADVAIMISGELAKLEDAGGDR-----GSLP-GKVYSEVVGIDPSANMLEVGRRKAAEAGLSSRVRLEIGDAQNLSDIADGSVDKLTMSFGIRNVPDRLKALREFRRIMATPTLTEPPTIEPGSEVEGAAKERGGAGDSDVAMGSSSVVAIMELQDPETGLLASASRAFIKYGAPVLGWLISGNGAEYGHLKNSILSFPSVLEWTALMEEAGKRQGLEVFSHETMGFGTVHLYLARP 1176
E+GSG+MFD+IA YD INK++SLGLD WR MV L+L+ D+V+D+ATGTADVAI++ ++ +L G++ GS P GK +VVGIDPSANML+ GR+K E L V L++GDAQ+L + S DK+TMSFGIRNVPD+ AL E R+ V +S V IME +P+ G++A SR FI+Y PVLG+ SG+ EY HL+ SI+ FP WT M+ A L+V E + FG V+L++A P
Sbjct: 37 EMGSGRMFDTIAAHYDSINKMMSLGLDQTWRGKMVAALELQHEDKVLDLATGTADVAILVGQKITELAKKSGNQHCSNDGSCPAGK--QQVVGIDPSANMLDNGRKKVTEKELDQVVTLQLGDAQDLKGLKSSSFDKVTMSFGIRNVPDQDAALSEIYRV--------------------------------VKKSENSRVVIMEFHNPQKGVMAPMSRFFIQYITPVLGYFFSGSLDEYSHLQKSIMEFPDPDVWTEKMKAAN----LDVIKSEDIFFGIVYLHIAVP 287
BLAST of mRNA_H-canaliculatus_F_contig1489.3685.1 vs. uniprot
Match: A0A7S2XAZ6_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XAZ6_9EUKA) HSP 1 Score: 200 bits (509), Expect = 2.560e-55 Identity = 125/286 (43.71%), Postives = 163/286 (56.99%), Query Frame = 1
Query: 322 GYELGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVQGLKLRAGDRVVDMATGTADVAIMISGELAKLEDAGGDRGSLPGKVYSEVVGIDPSANMLEVGRRKAAEAGLSSRVRLEIGDAQNLSDIADGSVDKLTMSFGIRNVPDRLKALREFRRIMATPTLTEPPTIEPGSEVEGAAKERGGAGDSDVAMGSSSVVAIMELQDPETGLLASASRAFIKYGAPVLGWLISGNGAEYGHLKNSILSFPSVLEWTALMEEAGKRQGLEVFSHETMGFGTVHLYLARPR 1179
G LGSG MFD I RYDLIN+V+SLG+D WRR +VQ L+LR GD V+D+ATGTADVAI+ + + PG ++V+GIDPSA M+ GR K L +V L +GDA NL DI GS DKL+M+FGIRN+PDR ALRE RR++ P S V AI+E +P+ G+L +R I+Y P LG L+SG EY HL++SI +FPS ++ +ME+A L+V E M F +V LY+A PR
Sbjct: 31 GETLGSGAMFDKIFERYDLINRVMSLGMDQSWRRELVQALELRRGDSVLDLATGTADVAIL-------------EAQAEPG---AKVLGIDPSAKMVGRGREKVQGLDLGEQVTLRVGDAMNLQDIESGSFDKLSMAFGIRNIPDRPLALREMRRVVRD---------SPDSRV-----------------------AILEFTEPQGGILQFCARMMIRYVLPRLGALLSGKWDEYMHLQDSIAAFPSATDFADVMEKAN----LKVLQVEEMMFSSVILYVASPR 264
BLAST of mRNA_H-canaliculatus_F_contig1489.3685.1 vs. uniprot
Match: A0A7S0DP24_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DP24_9EUKA) HSP 1 Score: 197 bits (501), Expect = 5.620e-54 Identity = 117/282 (41.49%), Postives = 166/282 (58.87%), Query Frame = 1
Query: 331 LGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVQGLKLRAGDRVVDMATGTADVAIMISGELAKLEDAGGDRGSLPGKVYSEVVGIDPSANMLEVGRRKAAEAGLSSRVRLEIGDAQNLSDIADGSVDKLTMSFGIRNVPDRLKALREFRRIMATPTLTEPPTIEPGSEVEGAAKERGGAGDSDVAMGSSSVVAIMELQDPETGLLASASRAFIKYGAPVLGWLISGNGAEYGHLKNSILSFPSVLEWTALMEEAGKRQGLEVFSHETMGFGTVHLYLARP 1176
LGSG+MFD +APRYDLIN+V+SL +D WR +V L+L+ GDRV+D+ATGTADVAI+ +A ++G EV+GIDPS NM+E+GR K GL +R+ L+IGDA L I D S DK++++FGIRN+PDRL+AL+E RR++ PGS V A++E +P G++ +R +I++ P+LG ++SG EY HL++SI FP+ E+ +ME+AG L V M F +V L+ A P
Sbjct: 39 LGSGRMFDEVAPRYDLINRVMSLTMDQSWRLELVSSLELQDGDRVLDLATGTADVAIL---------EAKDEKGV-------EVLGIDPSENMIELGRSKILNEGLENRISLQIGDAMALDTIQDASFDKVSIAFGIRNIPDRLQALKEIRRVVRD---------SPGSRV-----------------------AVLEFTEPHGGIIEFFARLYIRHVVPLLGSILSGKWREYMHLESSIAEFPAPDEFKLIMEKAG----LRVTDIRYMMFNSVILFTATP 268
BLAST of mRNA_H-canaliculatus_F_contig1489.3685.1 vs. uniprot
Match: A0A4D9D399_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D399_9STRA) HSP 1 Score: 202 bits (513), Expect = 3.720e-52 Identity = 127/301 (42.19%), Postives = 164/301 (54.49%), Query Frame = 1
Query: 298 QLEAEGGVGYE--------LGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVQGLKLRAGDRVVDMATGTADVAIMISGELAKLEDAGGDRGSLPGKVYSEVVGIDPSANMLEVGRRKAAEAGLSSRVRLEIGDAQNLSDIADGSVDKLTMSFGIRNVPDRLKALREFRRIMATPTLTEPPTIEPGSEVEGAAKERGGAGDSDVAMGSSSVVAIMELQDPETGLLASASRAFIKYGAPVLGWLISGNGAEYGHLKNSILSFPSVLEWTALMEEAGKRQGLEVFSHETMGFGTVHLYLARP 1176
QL+ GG G LGSG MFD++A YD +NK++SLGLD WR +++GL+L+ GD+V+D+ATGTADVA++ + GG +V GIDPSA ML +G K A GL S VRL +GDAQ + ++A SVDK++MSFGIRNV DRL AL+E R++ P S V I+E Q P+ G L + ++YGAP LG +G EY HL+ SIL FPS E+ ALMEE G L V GFG V L+LARP
Sbjct: 91 QLKMTGGEGSSERKEARAPLGSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGG-----------QVWGIDPSAGMLRIGEEKIAAKGLDSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVEDRLSALKEMARVLKK---------SPASRV-----------------------GILEFQLPQAGPLRWVAEFMVRYGAPFLGAFFTGLKEEYVHLRRSILEFPSPEEFVALMEEGG----LVVEEVRETGFGAVSLFLARP 344
BLAST of mRNA_H-canaliculatus_F_contig1489.3685.1 vs. uniprot
Match: A0A0G4EH38_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EH38_VITBC) HSP 1 Score: 188 bits (478), Expect = 1.430e-50 Identity = 120/286 (41.96%), Postives = 168/286 (58.74%), Query Frame = 1
Query: 331 LGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVQGLKLRAGDRVVDMATGTADVAIMISGELAKLEDAGGDRGSLPGKVYSEVVGIDPSANMLEVGRRKAAEAGLSSRVRLEIGDAQNLSDIADGSVDKLTMSFGIRNVP--DRLKALREFRRIMATPTLTEPPTIEPGSEVEGAAKERGGAGDSDVAMGSSSVVAIMELQDPE-TGLLASASRAFIKYGAPVLGWLISGNGAEYGHLKNSILSFPSVLEWTALMEEAGKRQGLEVFSHETMGFGTVHLYLARPR 1179
+GSG+MFD++APRYD +N+V+S+G+D WRR +VQ L+L DRV+D+ATGTADVAI++ ++ E+ G V+G+DPSANML VGR K + A L+ V LE+GDA L D S DK+++SFGIRNVP R+ AL EF R++ KE+G +AI+E+ +P TGLLA +R FI+ A V WL SG EY HL +SI +FP ++ ++++AG V ETMGFGTV +++A P+
Sbjct: 50 MGSGRMFDAVAPRYDFVNRVMSMGMDRAWRRRLVQTLQLEPSDRVLDVATGTADVAILVGQQMKSRENDTKRDGPC-------VIGVDPSANMLAVGRDKVSRAFLNDTVSLELGDALALQ-YEDSSFDKISISFGIRNVPAASRITALEEFHRVIK--------------------KEQGKR------------LAILEISEPAGTGLLARLARWFIRLNALVGAWL-SGRRREYRHLLDSIQAFPKQDDFCYMIDKAG----FTVLGVETMGFGTVKIFVAEPK 290
BLAST of mRNA_H-canaliculatus_F_contig1489.3685.1 vs. uniprot
Match: C5KJ96_PERM5 (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KJ96_PERM5) HSP 1 Score: 188 bits (477), Expect = 1.620e-50 Identity = 116/280 (41.43%), Postives = 158/280 (56.43%), Query Frame = 1
Query: 334 GSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVQGLKLRAGDRVVDMATGTADVAIMISGELAKLEDAGGDRGSLPGKVYSEVVGIDPSANMLEVGRRKAAEAGLSSRVRLEIGDAQNLSDIADGSVDKLTMSFGIRNVPDRLKALREFRRIMATPTLTEPPTIEPGSEVEGAAKERGGAGDSDVAMGSSSVVAIMELQDPETGLLASASRAFIKYGAPVLGWLISGNGAEYGHLKNSILSFPSVLEWTALMEEAGKRQGLEVFSHETMGFGTVHLYLAR 1173
GSGKMFD IA YD+ N+ +SLGLD WRRAM++ L LR+ D+++D+ATGT DVAIM + +A L S V GIDPS M+ VG+ K L RV LE+GDAQNL+ + D S+DK+TMSFGIRNVPDR +ALRE R++ ++ P S+V I+E P +LA ++ F++Y P+LG L+SGN EY +L+ SI FP+ E+T ++ GL+V E G V LY+A+
Sbjct: 55 GSGKMFDHIAEYYDMGNRAMSLGLDQGWRRAMLEALSLRSDDKLLDLATGTGDVAIMAA-HMANL---------------SNVRGIDPSVGMVSVGKDKVIAEDLDKRVFLEVGDAQNLTTVPDQSIDKITMSFGIRNVPDRPRALREMSRVL----VSSP----------------------------DSLVGILEFTAPTGTILAPIAKYFVRYVVPILGGLVSGNMDEYRYLEKSIFEFPTPEEFTNIINA----NGLKVIKVEHFVSGVVQLYIAQ 282
BLAST of mRNA_H-canaliculatus_F_contig1489.3685.1 vs. uniprot
Match: A0A7S2H0R6_9STRA (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0R6_9STRA) HSP 1 Score: 186 bits (472), Expect = 2.680e-50 Identity = 124/287 (43.21%), Postives = 162/287 (56.45%), Query Frame = 1
Query: 331 LGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVQGLKLRAGDRVVDMATGTADVAIMISGELAKLEDAGGDRGSLPGKVYSEVVGIDPSANMLEVGRRKAAEAGLSSRVRLEIGDAQNLSDIADGSVDKLTMSFGIRNVPDRLKALREFRRIMATPTLTEPPTIEPGSEVEGAAKERGGAGDSDVAMGSSSVVAIMELQDPETGLLASASRAFIKYGAPVLGWLISGNGAE-YGHLKNSILSFPSVLEWTALMEEAGKRQGLEVFSHETMGFGTVHLYLARPRIEN 1188
LGSG+MFD+IA RYD++NKVISLG D+ WRRA+V L + + D V+D+ATGTADVAIMIS + + RG+ V G+DPSANMLE+GR K A A LS V L GDAQ + + + DK+ +SFGIRN+PDRL ALRE R+ +PG+ V A++E DP G LA +R F+ Y P LG L SG +E Y HL+ SI +FP E+T M K GLE+ S + G V+LY+A+ E+
Sbjct: 15 LGSGEMFDAIAKRYDMVNKVISLGSDVAWRRALVDALDITSEDNVLDLATGTADVAIMISRDASS-------RGA-------NVTGLDPSANMLEIGREKVAAADLSKTVTLIQGDAQAI-EYPSNTFDKVCISFGIRNIPDRLSALREMMRV-----------AKPGARV-----------------------AVLEFSDPPEGPLAPFARFFLTYILPRLGALFSGGASEEYMHLQRSIAAFPLPEEFTLNM----KSVGLEIESWRCLHPGGVYLYVAQTPTES 248 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1489.3685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1489.3685.1 >prot_H-canaliculatus_F_contig1489.3685.1 ID=prot_H-canaliculatus_F_contig1489.3685.1|Name=mRNA_H-canaliculatus_F_contig1489.3685.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=330bp MIMRCGTTSAVLTAVIACFAYAFLVRNQQHQLEAEGGVGYELGSGKMFDSback to top mRNA from alignment at H-canaliculatus_F_contig1489:8185..14850+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1489.3685.1 ID=mRNA_H-canaliculatus_F_contig1489.3685.1|Name=mRNA_H-canaliculatus_F_contig1489.3685.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1489:8185..14850+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1489:8185..14850+ >mRNA_H-canaliculatus_F_contig1489.3685.1 ID=mRNA_H-canaliculatus_F_contig1489.3685.1|Name=mRNA_H-canaliculatus_F_contig1489.3685.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1980bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1489:8185..14850+ (Hapterophycus canaliculatus Oshoro5f female)back to top |