mRNA_H-canaliculatus_F_contig14872.3681.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14872.3681.1
Unique NamemRNA_H-canaliculatus_F_contig14872.3681.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14872.3681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14872contigH-canaliculatus_F_contig14872:1987..2442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size409
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14872.3681.1prot_H-canaliculatus_F_contig14872.3681.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14872 2146..2405 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929229.6498067-UTR-H-canaliculatus_F_contig14872:1986..21451622929229.6498067-UTR-H-canaliculatus_F_contig14872:1986..2145Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14872 1987..2145 +
1696845726.7055283-UTR-H-canaliculatus_F_contig14872:1986..21451696845726.7055283-UTR-H-canaliculatus_F_contig14872:1986..2145Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14872 1987..2145 +
1622929229.682942-UTR-H-canaliculatus_F_contig14872:2405..24421622929229.682942-UTR-H-canaliculatus_F_contig14872:2405..2442Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14872 2406..2442 +
1696845726.7323718-UTR-H-canaliculatus_F_contig14872:2405..24421696845726.7323718-UTR-H-canaliculatus_F_contig14872:2405..2442Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14872 2406..2442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929229.662328-CDS-H-canaliculatus_F_contig14872:2145..21531622929229.662328-CDS-H-canaliculatus_F_contig14872:2145..2153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14872 2146..2153 +
1696845726.7150564-CDS-H-canaliculatus_F_contig14872:2145..21531696845726.7150564-CDS-H-canaliculatus_F_contig14872:2145..2153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14872 2146..2153 +
1622929229.673124-CDS-H-canaliculatus_F_contig14872:2200..24051622929229.673124-CDS-H-canaliculatus_F_contig14872:2200..2405Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14872 2201..2405 +
1696845726.7238066-CDS-H-canaliculatus_F_contig14872:2200..24051696845726.7238066-CDS-H-canaliculatus_F_contig14872:2200..2405Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14872 2201..2405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14872.3681.1

>prot_H-canaliculatus_F_contig14872.3681.1 ID=prot_H-canaliculatus_F_contig14872.3681.1|Name=mRNA_H-canaliculatus_F_contig14872.3681.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=71bp
MHDRRPLGYWARFRRARRSEIYPNKVTVPPADPPPTPQAHPRESPRSDDP
YEHPFPNEHNMAPQTSLLRA*
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mRNA from alignment at H-canaliculatus_F_contig14872:1987..2442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14872.3681.1 ID=mRNA_H-canaliculatus_F_contig14872.3681.1|Name=mRNA_H-canaliculatus_F_contig14872.3681.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=456bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14872:1987..2442+ (Hapterophycus canaliculatus Oshoro5f female)
GACCGACCGCGCACGAACGACCCTCCTGATGCGACTGTCGATCCCCACAA
CTCCTCGACTCTTCTCCGACGCGAGGCAACCATTTACACCAGAGTCAGGC
CTGTTAGGAGGCCGGCCAAACAACGGCTGCGGGGAAAGAGTCAAGCGGCA
AACGGCTGCATGCATGAGCAACAAACACCCCGTCGCACAGAACCTTACCG
CAAACCGCGAACAGCCGGCGGCCCCTCGGGTACTGGGCACGCTTTCGCCG
CGCCAGAAGGTCTGAGATATATCCCAATAAAGTGACAGTCCCGCCAGCTG
ATCCGCCTCCCACACCACAAGCCCACCCCCGCGAAAGCCCGCGGTCCGAC
GATCCATACGAGCACCCCTTCCCAAACGAACACAATATGGCACCCCAAAC
CTCATTGCTTCGAGCTTAGGATTTCGCGGAGATCTGCGTTTCTCTCCTCA
TATTGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14872:1987..2442+

>mRNA_H-canaliculatus_F_contig14872.3681.1 ID=mRNA_H-canaliculatus_F_contig14872.3681.1|Name=mRNA_H-canaliculatus_F_contig14872.3681.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=426bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14872:1987..2442+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCATGAATGCATGACCGGCGGCCCCTCGGGTACTGGGCACGCTTTCGC
CGCGCCAGAAGGTCTGAGATATATCCCAATAAAGTGACAGTCCCGCCAGC
TGATCCGCCTCCCACACCACAAGCCCACCCCCGCGAAAGCCCGCGGTCCG
ACGATCCATACGAGCACCCCTTCCCAAACGAACACAATATGGCACCCCAA
ACCTCATTGCTTCGAGCTTAGCCGGCGGCCCCTCGGGTACTGGGCACGCT
TTCGCCGCGCCAGAAGGTCTGAGATATATCCCAATAAAGTGACAGTCCCG
CCAGCTGATCCGCCTCCCACACCACAAGCCCACCCCCGCGAAAGCCCGCG
GTCCGACGATCCATACGAGCACCCCTTCCCAAACGAACACAATATGGCAC
CCCAAACCTCATTGCTTCGAGCTTAG
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