mRNA_H-canaliculatus_F_contig14851.3674.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14851.3674.1
Unique NamemRNA_H-canaliculatus_F_contig14851.3674.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14851.3674.1 vs. uniprot
Match: D7FVH2_ECTSI (Myosin I, high molecular weight-Acanthamoeba sp n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH2_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 2.090e-115
Identity = 201/292 (68.84%), Postives = 210/292 (71.92%), Query Frame = 1
Query:    1 DFDEVRNAMDTLLFKQHTKDTIWAVLAAVLHLGNVAFTDKRNPDVDEEAKVANRETLAFAAKLIGCDAQLLTSCLTMRKLSTGNVVVPYKVDEAGHTRDAMTKTLYSLLFEWIIKEINKTLEVRENERHVCVSVCLCVLCVLCAFLCCVSRSPVPSLRFTTVFPLETESRDLPPPDRLLSLAPFDLVLQSGSASKNGRXXXXXXXGNSESIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ 876
            DFDEVRNAMDTLLF Q TKDTIW++LAAVLHLGNVAFTDKRNPDVDE AKVAN++TLAFAA L+GCD +LLTSCLTMRKLSTGNVVVPYKVDEAGHTRDAMTKTLYSLLFEWIIK+INKTLE                                                                   +G  SKNGR       G S+SIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ
Sbjct:  259 DFDEVRNAMDTLLFTQDTKDTIWSILAAVLHLGNVAFTDKRNPDVDEVAKVANKQTLAFAASLVGCDPKLLTSCLTMRKLSTGNVVVPYKVDEAGHTRDAMTKTLYSLLFEWIIKQINKTLE-------------------------------------------------------------------AGGTSKNGRGRGGG--GMSDSIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ 481          
BLAST of mRNA_H-canaliculatus_F_contig14851.3674.1 vs. uniprot
Match: A0A6H5JBI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI4_9PHAE)

HSP 1 Score: 373 bits (957), Expect = 3.520e-115
Identity = 201/292 (68.84%), Postives = 210/292 (71.92%), Query Frame = 1
Query:    1 DFDEVRNAMDTLLFKQHTKDTIWAVLAAVLHLGNVAFTDKRNPDVDEEAKVANRETLAFAAKLIGCDAQLLTSCLTMRKLSTGNVVVPYKVDEAGHTRDAMTKTLYSLLFEWIIKEINKTLEVRENERHVCVSVCLCVLCVLCAFLCCVSRSPVPSLRFTTVFPLETESRDLPPPDRLLSLAPFDLVLQSGSASKNGRXXXXXXXGNSESIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ 876
            DFDEVRNAMDTLLF Q TKDTIW++LAAVLHLGNVAFTDKRNPDVDE AKVAN++TLAFAA L+GCD +LLTSCLTMRKLSTGNVVVPYKVDEAGHTRDAMTKTLYSLLFEWIIK+INKTLE                                                                   +G  SKNGR       G S+SIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ
Sbjct:  191 DFDEVRNAMDTLLFTQDTKDTIWSILAAVLHLGNVAFTDKRNPDVDEVAKVANKQTLAFAASLVGCDPKLLTSCLTMRKLSTGNVVVPYKVDEAGHTRDAMTKTLYSLLFEWIIKQINKTLE-------------------------------------------------------------------AGGTSKNGRGRGGG--GMSDSIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ 413          
BLAST of mRNA_H-canaliculatus_F_contig14851.3674.1 vs. uniprot
Match: A0A835YVK9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVK9_9STRA)

HSP 1 Score: 233 bits (594), Expect = 9.550e-68
Identity = 136/292 (46.58%), Postives = 163/292 (55.82%), Query Frame = 1
Query:    1 DFDEVRNAMDTLLFKQHTKDTIWAVLAAVLHLGNVAFTDKRNPDVDEEAKVANRETLAFAAKLIGCDAQLLTSCLTMRKLSTGNVVVPYKVDEAGHTRDAMTKTLYSLLFEWIIKEINKTLEVRENERHVCVSVCLCVLCVLCAFLCCVSRSPVPSLRFTTVFPLETESRDLPPPDRLLSLAPFDLVLQSGSASKNGRXXXXXXXGNSESIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ 876
            DFDEVRNAM+ L F    +  IW V+AA+LHLGNV FTD    D D+ A+V +   LAFAA+L+G     L+  LT R LS G ++VPYKV EA  TRDAM KTLY+L+FEWII++IN TLE                                                                   +GSAS              +SII LLDIFGFESF TNSFEQLCINYCNEKLNNHFNEHVFK E+A Y+ EGV V +L +KDN PIL+F+E   +G+YS+LDEQ
Sbjct:  111 DFDEVRNAMNILNFDAGAQAEIWRVVAAILHLGNVKFTDSAAVDKDDNARVCSAPVLAFAAELLGVAPATLSRALTERLLSAGKIIVPYKVREAMDTRDAMVKTLYALMFEWIIRKINVTLE-----------------------------------------------------------------KNAGSASARN---------TKDSIIGLLDIFGFESFVTNSFEQLCINYCNEKLNNHFNEHVFKHELAIYSEEGVNVRDLSYKDNMPILEFLENSHNGIYSMLDEQ 328          
BLAST of mRNA_H-canaliculatus_F_contig14851.3674.1 vs. uniprot
Match: A0A835YPP0_9STRA (Myosin I, high molecular weight-Acanthamoeba sp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPP0_9STRA)

HSP 1 Score: 233 bits (595), Expect = 5.460e-66
Identity = 135/292 (46.23%), Postives = 165/292 (56.51%), Query Frame = 1
Query:    1 DFDEVRNAMDTLLFKQHTKDTIWAVLAAVLHLGNVAFTDKRNPDVDEEAKVANRETLAFAAKLIGCDAQLLTSCLTMRKLSTGNVVVPYKVDEAGHTRDAMTKTLYSLLFEWIIKEINKTLEVRENERHVCVSVCLCVLCVLCAFLCCVSRSPVPSLRFTTVFPLETESRDLPPPDRLLSLAPFDLVLQSGSASKNGRXXXXXXXGNSESIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ 876
            DFDEV NAMD L F++ ++  IW ++AA+LH GNV FT     D DE A++ N +TL FAA LIG +AQ  +  LT R LS G VVVPYKV EA  TRDAM KTLY+L+FEWII++IN TLE                                                                     ++++N R          +SII LLDIFGFESF TNSFEQLCINYCNEKLNNHFNEHVFK E+A Y  EGV V +L +KDN PIL+F+E   +G+YS++DEQ
Sbjct:  306 DFDEVCNAMDILNFEESSQMEIWKIVAAILHFGNVKFTATAAFDKDETARIINTDTLNFAAGLIGINAQTFSRVLTQRILSVGKVVVPYKVREAMDTRDAMVKTLYALMFEWIIRKINMTLEKNAGS----------------------------------------------------------------TSARNSR----------DSIIGLLDIFGFESFTTNSFEQLCINYCNEKLNNHFNEHVFKHELAIYVQEGVSVRDLSYKDNMPILEFLENGHNGIYSMMDEQ 523          
BLAST of mRNA_H-canaliculatus_F_contig14851.3674.1 vs. uniprot
Match: A0A8J4Q311_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q311_9MYCE)

HSP 1 Score: 145 bits (366), Expect = 2.170e-35
Identity = 93/294 (31.63%), Postives = 135/294 (45.92%), Query Frame = 1
Query:    1 DFDEVRNAMDTLLFKQHTKDTIWAVLAAVLHLGNVAFTDKRNPDVDEEAKVANRETLAFAAKLIGCDAQLLTSCLTMRK--LSTGNVVVPYKVDEAGHTRDAMTKTLYSLLFEWIIKEINKTLEVRENERHVCVSVCLCVLCVLCAFLCCVSRSPVPSLRFTTVFPLETESRDLPPPDRLLSLAPFDLVLQSGSASKNGRXXXXXXXGNSESIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ 876
            DF+ VR AM+ L   +  ++TI+++L+AVLHLGN+ F         E + V N++TL   AKL+  D+  L +CLT+R   +     V+P KV+EA  TRD++ K+LY  +F W++  IN  +                               P P+  F                                                    I +LDIFGFE+F+ NSFEQ CIN+ NEKL  HFN+H+FK E   Y  E +    +V+ DN+  LD IE +  G+ S+LDE+
Sbjct:  245 DFEHVRYAMNVLTLPEDKQNTIFSILSAVLHLGNIQFEKSEKTQGAEGSSVTNQDTLQIVAKLLQVDSTKLETCLTIRHVLIRGQKFVIPLKVNEAEDTRDSLAKSLYGNVFNWLVAFINTRI-----------------------------YKPQPNSTF----------------------------------------------------IGVLDIFGFENFKKNSFEQFCINFANEKLQQHFNQHIFKLEQEEYEKEKINWSKIVYNDNQECLDLIEKRPLGILSLLDEE 457          
BLAST of mRNA_H-canaliculatus_F_contig14851.3674.1 vs. uniprot
Match: UPI001EAFABF8 (unconventional myosin-IXa-like isoform X8 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFABF8)

HSP 1 Score: 145 bits (365), Expect = 2.910e-35
Identity = 97/294 (32.99%), Postives = 140/294 (47.62%), Query Frame = 1
Query:    1 DFDEVRNAMDTLLFKQHTKDTIWAVLAAVLHLGNVAFTDKRNPDVDEEAKVANRETLAFAAKLIGCDAQLLTSCLTMRKLSTGN--VVVPYKVDEAGHTRDAMTKTLYSLLFEWIIKEINKTLEVRENERHVCVSVCLCVLCVLCAFLCCVSRSPVPSLRFTTVFPLETESRDLPPPDRLLSLAPFDLVLQSGSASKNGRXXXXXXXGNSESIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ 876
            +F  ++ +M+ + F   T+  I+AVL+AVLHLGN+ F  K +   DE   V N  T+     L+    + +   LT +K   G+  VV+ YK+++A  TRDAM K LY  LF+WI+ ++N+ L  +++                       S   VP     +      ES    P    L L    L L                 GNS   I +LDIFGFE F  NSFEQ CIN+ NE L  +FN+H+FK E   Y  EG+   N+ F DN   L+    +  GL+ ++DE+
Sbjct:  395 EFARLKQSMEMVGFSHETQKRIFAVLSAVLHLGNIEFRKKGDQHHDESVSVKNEATVQIICSLLKVKEKTVLEALTTKKTVAGDETVVINYKMEDAIATRDAMAKCLYGSLFDWIVLKVNQALLAKKHN----------------------SEHQVPKEVVLSTSDSSPESNG--PLQGQLDLESDPLAL-----------------GNS---IGVLDIFGFEDFGKNSFEQFCINFANEHLQYYFNQHIFKFEQEEYQREGIQWKNIEFIDNTACLELFSKRPKGLFCLMDEE 644          
BLAST of mRNA_H-canaliculatus_F_contig14851.3674.1 vs. uniprot
Match: UPI001EAF91CD (unconventional myosin-IXAa-like isoform X1 n=14 Tax=Haliotis TaxID=6452 RepID=UPI001EAF91CD)

HSP 1 Score: 145 bits (365), Expect = 2.920e-35
Identity = 97/294 (32.99%), Postives = 140/294 (47.62%), Query Frame = 1
Query:    1 DFDEVRNAMDTLLFKQHTKDTIWAVLAAVLHLGNVAFTDKRNPDVDEEAKVANRETLAFAAKLIGCDAQLLTSCLTMRKLSTGN--VVVPYKVDEAGHTRDAMTKTLYSLLFEWIIKEINKTLEVRENERHVCVSVCLCVLCVLCAFLCCVSRSPVPSLRFTTVFPLETESRDLPPPDRLLSLAPFDLVLQSGSASKNGRXXXXXXXGNSESIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ 876
            +F  ++ +M+ + F   T+  I+AVL+AVLHLGN+ F  K +   DE   V N  T+     L+    + +   LT +K   G+  VV+ YK+++A  TRDAM K LY  LF+WI+ ++N+ L  +++                       S   VP     +      ES    P    L L    L L                 GNS   I +LDIFGFE F  NSFEQ CIN+ NE L  +FN+H+FK E   Y  EG+   N+ F DN   L+    +  GL+ ++DE+
Sbjct:  395 EFARLKQSMEMVGFSHETQKRIFAVLSAVLHLGNIEFRKKGDQHHDESVSVKNEATVQIICSLLKVKEKTVLEALTTKKTVAGDETVVINYKMEDAIATRDAMAKCLYGSLFDWIVLKVNQALLAKKHN----------------------SEHQVPKEVVLSTSDSSPESNG--PLQGQLDLESDPLAL-----------------GNS---IGVLDIFGFEDFGKNSFEQFCINFANEHLQYYFNQHIFKFEQEEYQREGIQWKNIEFIDNTACLELFSKRPKGLFCLMDEE 644          
BLAST of mRNA_H-canaliculatus_F_contig14851.3674.1 vs. uniprot
Match: A0A5C7HFK6_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HFK6_9ROSI)

HSP 1 Score: 144 bits (364), Expect = 3.800e-35
Identity = 95/290 (32.76%), Postives = 132/290 (45.52%), Query Frame = 1
Query:   10 EVRNAMDTLLFKQHTKDTIWAVLAAVLHLGNVAFTDKRNPDVDEEAKVANRETLAFAAKLIGCDAQLLTSCLTMRKLST--GNVVVPYKVDEAGHTRDAMTKTLYSLLFEWIIKEINKTLEVRENERHVCVSVCLCVLCVLCAFLCCVSRSPVPSLRFTTVFPLETESRDLPPPDRLLSLAPFDLVLQSGSASKNGRXXXXXXXGNSESIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDE 873
            E RNAMD +   Q  +D I+ V+AA+LHLGN+ FT  +  D  +     +   L  AA+L+ CD + L   L  R + T  GN+  P   D A  +RDA+ KT+YS LF+WI+++IN +                            + + P                                                     N+ S+I +LDI+GFESF+ NSFEQLCIN  NEKL  HFN+HVFK E   Y  E +    + F DN+ +LD IE K  G+ ++LDE
Sbjct:  303 ETRNAMDIVGISQEEQDAIFRVVAAILHLGNIDFTKGKEVDSSKLKDEKSHYHLQTAAELLMCDEKALEDSLCKRVIVTPDGNITKPLDPDSAALSRDALAKTVYSRLFDWIVEKINSS----------------------------IGQDP-----------------------------------------------------NASSLIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTREEINWSYVEFVDNQDVLDLIEKKPGGIIALLDE 511          
BLAST of mRNA_H-canaliculatus_F_contig14851.3674.1 vs. uniprot
Match: F0Z7K7_DICPU (Class VII unconventional myosin n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z7K7_DICPU)

HSP 1 Score: 143 bits (361), Expect = 1.000e-34
Identity = 93/294 (31.63%), Postives = 135/294 (45.92%), Query Frame = 1
Query:    1 DFDEVRNAMDTLLFKQHTKDTIWAVLAAVLHLGNVAFTDKRNPDVDEEAKVANRETLAFAAKLIGCDAQLLTSCLTMRK--LSTGNVVVPYKVDEAGHTRDAMTKTLYSLLFEWIIKEINKTLEVRENERHVCVSVCLCVLCVLCAFLCCVSRSPVPSLRFTTVFPLETESRDLPPPDRLLSLAPFDLVLQSGSASKNGRXXXXXXXGNSESIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ 876
            DF+ V+ AM+ L   +  + TI+++++AVLHLGN+ F         E ++V+N+++L   A+L+  D   L SCLT+R   +   N V+P KV+EA  TRDA++K LY  +F W++  IN                               SR   P    T                                                   I +LDIFGFE+F+ NSFEQ CIN+ NEKL  HFN+H+FK E   Y  E +    +V+ DN+  LD IE +  G+ S+LDE+
Sbjct:  243 DFEHVKYAMNVLGLPEDKQTTIFSIISAVLHLGNIQFEKSEKTQGAEGSEVSNKDSLKIVAQLLNVDPAKLESCLTIRHVLIRGQNFVIPLKVNEAEDTRDALSKALYGNVFNWLVTFIN-------------------------------SRIHKPQKNST--------------------------------------------------FIGVLDIFGFENFKKNSFEQFCINFANEKLQQHFNQHIFKLEQEEYEKEKINWSKIVYNDNQECLDLIEKRPLGILSLLDEE 455          
BLAST of mRNA_H-canaliculatus_F_contig14851.3674.1 vs. uniprot
Match: A0A1S3K725_LINUN (LOW QUALITY PROTEIN: unconventional myosin-IXa-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K725_LINUN)

HSP 1 Score: 143 bits (360), Expect = 1.340e-34
Identity = 98/294 (33.33%), Postives = 142/294 (48.30%), Query Frame = 1
Query:    1 DFDEVRNAMDTLLFKQHTKDTIWAVLAAVLHLGNVAFTDKRNPDVDEEAKVANRETLAFAAKLIGCDAQLLTSCLTMRKLSTGN--VVVPYKVDEAGHTRDAMTKTLYSLLFEWIIKEINKTLEVRENERHVCVSVCLCVLCVLCAFLCCVSRSPVPSLRFTTVFPLETESRDLPPPDRLLSLAPFDLVLQSGSASKNGRXXXXXXXGNSESIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAAEGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ 876
            +F  ++ +M+ + F   T+  +++VL+AVLHLGN+ F  K     DE   + N E++   + L+    + L   LTM+K + G   V++PY++++A  TRDAM K LY  LF+WI+ ++N +L  +++ +   V                                              L                   XXXXXXXGNS   I +LDIFGFE F  NSFEQ CINY NE L  +FN+H+FK E   Y  EG+   N+ F DN   LD    K  GL+ +LDE+
Sbjct:  402 EFARLKQSMEIVGFSTETQRRVFSVLSAVLHLGNIEFKKKSEIHHDEAVYIKNIESVQVISGLLKVKEETLVEALTMKKTTAGEETVIIPYRMEDALATRDAMAKCLYGALFDWIVLQVNHSLLAKKDHKEHQV---------------------------------------------YLXXXXXXXXXXXXXXXXXXXXXXXXXXGNS---IGVLDIFGFEDFTKNSFEQFCINYANEHLQYYFNQHIFKFEQEEYQREGIQWKNIEFIDNTGCLDLFAKKPHGLFHLLDEE 647          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14851.3674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVH2_ECTSI2.090e-11568.84Myosin I, high molecular weight-Acanthamoeba sp n=... [more]
A0A6H5JBI4_9PHAE3.520e-11568.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YVK9_9STRA9.550e-6846.58P-loop containing nucleoside triphosphate hydrolas... [more]
A0A835YPP0_9STRA5.460e-6646.23Myosin I, high molecular weight-Acanthamoeba sp n=... [more]
A0A8J4Q311_9MYCE2.170e-3531.63Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI001EAFABF82.910e-3532.99unconventional myosin-IXa-like isoform X8 n=1 Tax=... [more]
UPI001EAF91CD2.920e-3532.99unconventional myosin-IXAa-like isoform X1 n=14 Ta... [more]
A0A5C7HFK6_9ROSI3.800e-3532.76Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]
F0Z7K7_DICPU1.000e-3431.63Class VII unconventional myosin n=1 Tax=Dictyostel... [more]
A0A1S3K725_LINUN1.340e-3433.33LOW QUALITY PROTEIN: unconventional myosin-IXa-lik... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14851contigH-canaliculatus_F_contig14851:121..1593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score358.6
Seed ortholog evalue2.7e-96
Seed eggNOG ortholog2880.D7FVH2
Preferred nameMyo22
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG4229@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size876
Cds size852
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14851.3674.1prot_H-canaliculatus_F_contig14851.3674.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14851 145..1593 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929228.4596622-UTR-H-canaliculatus_F_contig14851:120..1441622929228.4596622-UTR-H-canaliculatus_F_contig14851:120..144Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14851 121..144 +
1696845726.1400204-UTR-H-canaliculatus_F_contig14851:120..1441696845726.1400204-UTR-H-canaliculatus_F_contig14851:120..144Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14851 121..144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929228.4775157-CDS-H-canaliculatus_F_contig14851:144..3271622929228.4775157-CDS-H-canaliculatus_F_contig14851:144..327Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14851 145..327 +
1696845726.14983-CDS-H-canaliculatus_F_contig14851:144..3271696845726.14983-CDS-H-canaliculatus_F_contig14851:144..327Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14851 145..327 +
1622929228.4920018-CDS-H-canaliculatus_F_contig14851:783..10291622929228.4920018-CDS-H-canaliculatus_F_contig14851:783..1029Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14851 784..1029 +
1696845726.1579585-CDS-H-canaliculatus_F_contig14851:783..10291696845726.1579585-CDS-H-canaliculatus_F_contig14851:783..1029Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14851 784..1029 +
1622929228.5118992-CDS-H-canaliculatus_F_contig14851:1170..15931622929228.5118992-CDS-H-canaliculatus_F_contig14851:1170..1593Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14851 1171..1593 +
1696845726.1659946-CDS-H-canaliculatus_F_contig14851:1170..15931696845726.1659946-CDS-H-canaliculatus_F_contig14851:1170..1593Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14851 1171..1593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14851.3674.1

>prot_H-canaliculatus_F_contig14851.3674.1 ID=prot_H-canaliculatus_F_contig14851.3674.1|Name=mRNA_H-canaliculatus_F_contig14851.3674.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=284bp
MDTLLFKQHTKDTIWAVLAAVLHLGNVAFTDKRNPDVDEEAKVANRETLA
FAAKLIGCDAQLLTSCLTMRKLSTGNVVVPYKVDEAGHTRDAMTKTLYSL
LFEWIIKEINKTLEVRENERHVCVSVCLCVLCVLCAFLCCVSRSPVPSLR
FTTVFPLETESRDLPPPDRLLSLAPFDLVLQSGSASKNGRGRGGGSGGNS
ESIIALLDIFGFESFQTNSFEQLCINYCNEKLNNHFNEHVFKGEIAAYAA
EGVVVPNLVFKDNKPILDFIEGKGDGLYSILDEQ
back to top

mRNA from alignment at H-canaliculatus_F_contig14851:121..1593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14851.3674.1 ID=mRNA_H-canaliculatus_F_contig14851.3674.1|Name=mRNA_H-canaliculatus_F_contig14851.3674.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1473bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14851:121..1593+ (Hapterophycus canaliculatus Oshoro5f female)
GACTTCGACGAGGTCCGAAACGCCATGGACACGCTCCTGTTCAAGCAGCA CACCAAGGACACCATCTGGGCGGTCCTCGCCGCCGTGCTCCACCTCGGCA ACGTCGCCTTCACCGACAAGCGAAACCCGGACGTGGACGAGGAGGCCAAG GTGGCCAACAGGGAGACCCTGGCCTTCGCGGCCAAGCTCATCGGCTGCGA CGCTCAGGTGCGTGTTCGGGCGTTCGTCTCGGCCCGCGCGGCGAACCTCG CCGAGCGGCTGTGCGGGAGGAACGGTCCCGAAGAGTTATTTTCTTTTTGA GGGGGGGGGGCGGGGGGGGGTGTCTTCGGCGGGGTGCGGCGGGGAGGTGC CACTGCTGCCGAGGAGCGCTGCGCGTGGATTTGCAATACTTGGGTTAGGT AGAAGGTGAAGTCGAGGCGAGGCGGGACGATTCGCCTTGCAGTTCTTGCG GGGGCCTCGGTCTTGCGAGAAATGGCTCGCGGTCTATTCTGGGTGCGCTG GGCTGTGGGCGCTGACTCTTGCGCCCCATCTTTTTTCCCCGTTTCCCTCT CGCCGTCCTTGCCTCGTTACCTCGTTCTCTCCCGCTCGGCGTGCTTTTCT TCTCGTTTTTTCTCCCTTTTTTTTGTCGTTTTTCTTGTTTCTTGTGGCGC CCCAACGCAACAGCTGCTGACGAGCTGCCTGACGATGCGGAAGCTGAGCA CAGGCAACGTGGTGGTGCCGTACAAGGTGGACGAGGCGGGGCACACGAGG GACGCCATGACCAAGACGCTGTACTCTCTCCTGTTCGAGTGGATCATCAA GGAGATCAACAAGACGTTGGAGGTGCGCGAAAACGAGCGCCACGTCTGCG TGTCTGTGTGTCTGTGTGTCTTATGTGTTTTGTGTGCGTTTCTTTGTTGT GTCTCACGCGTCTTGTTTTCCGCCCGTGTGTGCTCATCTGTGTGGTCAGG CTGTAGGCACGCACCCAGCGACGCGCGAACCCAGGACTCGTGACCCACAG CCTCTCTTCTTCTCGTCTTTTTTTCTTCTGTTTGCGGCCCTGCGCGAAAG AGTCCTGTGCCATCTCTACGCTTTACAACAGTATTCCCACTCGAAACGGA ATCCCGCGACTTACCGCCTCCGGATCGTCTCCTTTCTCTCGCCCCCTTTG ACCTCGTGTTGCAGTCCGGTAGCGCTTCCAAGAACGGGCGGGGGCGGGGG GGCGGCAGCGGCGGGAACAGCGAGTCCATCATCGCTCTGCTCGACATCTT CGGCTTCGAGAGCTTCCAGACCAACAGCTTCGAGCAGCTGTGCATCAACT ACTGCAACGAGAAGCTCAACAACCACTTCAACGAGCACGTCTTCAAGGGG GAGATCGCGGCGTACGCGGCGGAGGGGGTGGTGGTGCCGAACCTGGTTTT CAAGGACAACAAGCCCATCCTGGACTTCATCGAGGGGAAGGGGGACGGCC TGTACAGCATCCTCGACGAGCAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14851:121..1593+

>mRNA_H-canaliculatus_F_contig14851.3674.1 ID=mRNA_H-canaliculatus_F_contig14851.3674.1|Name=mRNA_H-canaliculatus_F_contig14851.3674.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1704bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14851:121..1593+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACACGCTCCTGTTCAAGCAGCACACCAAGGACACCATCTGGGCGGT
CCTCGCCGCCGTGCTCCACCTCGGCAACGTCGCCTTCACCGACAAGCGAA
ACCCGGACGTGGACGAGGAGGCCAAGGTGGCCAACAGGGAGACCCTGGCC
TTCGCGGCCAAGCTCATCGGCTGCGACGCTCAGATGGACACGCTCCTGTT
CAAGCAGCACACCAAGGACACCATCTGGGCGGTCCTCGCCGCCGTGCTCC
ACCTCGGCAACGTCGCCTTCACCGACAAGCGAAACCCGGACGTGGACGAG
GAGGCCAAGGTGGCCAACAGGGAGACCCTGGCCTTCGCGGCCAAGCTCAT
CGGCTGCGACGCTCAGCTGCTGACGAGCTGCCTGACGATGCGGAAGCTGA
GCACAGGCAACGTGGTGGTGCCGTACAAGGTGGACGAGGCGGGGCACACG
AGGGACGCCATGACCAAGACGCTGTACTCTCTCCTGTTCGAGTGGATCAT
CAAGGAGATCAACAAGACGTTGGAGGTGCGCGAAAACGAGCGCCACGTCT
GCGTGTCTGTGTGTCTGTGTGTCTTATGTGTTTTGTGTGCGTTTCTTTGT
TGTGTCTCACGCCTGCTGACGAGCTGCCTGACGATGCGGAAGCTGAGCAC
AGGCAACGTGGTGGTGCCGTACAAGGTGGACGAGGCGGGGCACACGAGGG
ACGCCATGACCAAGACGCTGTACTCTCTCCTGTTCGAGTGGATCATCAAG
GAGATCAACAAGACGTTGGAGGTGCGCGAAAACGAGCGCCACGTCTGCGT
GTCTGTGTGTCTGTGTGTCTTATGTGTTTTGTGTGCGTTTCTTTGTTGTG
TCTCACGCAGTCCTGTGCCATCTCTACGCTTTACAACAGTATTCCCACTC
GAAACGGAATCCCGCGACTTACCGCCTCCGGATCGTCTCCTTTCTCTCGC
CCCCTTTGACCTCGTGTTGCAGTCCGGTAGCGCTTCCAAGAACGGGCGGG
GGCGGGGGGGCGGCAGCGGCGGGAACAGCGAGTCCATCATCGCTCTGCTC
GACATCTTCGGCTTCGAGAGCTTCCAGACCAACAGCTTCGAGCAGCTGTG
CATCAACTACTGCAACGAGAAGCTCAACAACCACTTCAACGAGCACGTCT
TCAAGGGGGAGATCGCGGCGTACGCGGCGGAGGGGGTGGTGGTGCCGAAC
CTGGTTTTCAAGGACAACAAGCCCATCCTGGACTTCATCGAGGGGAAGGG
GGACGGCCTGTACAGCATCCTCGACGAGCAGAGTCCTGTGCCATCTCTAC
GCTTTACAACAGTATTCCCACTCGAAACGGAATCCCGCGACTTACCGCCT
CCGGATCGTCTCCTTTCTCTCGCCCCCTTTGACCTCGTGTTGCAGTCCGG
TAGCGCTTCCAAGAACGGGCGGGGGCGGGGGGGCGGCAGCGGCGGGAACA
GCGAGTCCATCATCGCTCTGCTCGACATCTTCGGCTTCGAGAGCTTCCAG
ACCAACAGCTTCGAGCAGCTGTGCATCAACTACTGCAACGAGAAGCTCAA
CAACCACTTCAACGAGCACGTCTTCAAGGGGGAGATCGCGGCGTACGCGG
CGGAGGGGGTGGTGGTGCCGAACCTGGTTTTCAAGGACAACAAGCCCATC
CTGGACTTCATCGAGGGGAAGGGGGACGGCCTGTACAGCATCCTCGACGA
GCAG
back to top