mRNA_H-canaliculatus_F_contig1484.3665.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1484.3665.1
Unique NamemRNA_H-canaliculatus_F_contig1484.3665.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1484.3665.1 vs. uniprot
Match: D7FYZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ0_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 3.900e-6
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 3 
Query:  120 METSMSRNTAIHSGQLFAGNPRSYQGGSVLKVNKPPKLAVV 242
            ++TSMSRNT IH GQLFA     Y GGS LK N  PKL +V
Sbjct:    4 VDTSMSRNTVIHGGQLFAARTNDYVGGSPLKTNYSPKLCMV 44
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1484.3665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYZ0_ECTSI3.900e-660.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1484contigH-canaliculatus_F_contig1484:20839..21391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size245
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929227.3386378-CDS-H-canaliculatus_F_contig1484:20838..209711622929227.3386378-CDS-H-canaliculatus_F_contig1484:20838..20971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1484 20839..20971 +
1696845725.7483354-CDS-H-canaliculatus_F_contig1484:20838..209711696845725.7483354-CDS-H-canaliculatus_F_contig1484:20838..20971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1484 20839..20971 +
1622929227.357757-CDS-H-canaliculatus_F_contig1484:21279..213891622929227.357757-CDS-H-canaliculatus_F_contig1484:21279..21389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1484 21280..21389 +
1696845725.7596622-CDS-H-canaliculatus_F_contig1484:21279..213891696845725.7596622-CDS-H-canaliculatus_F_contig1484:21279..21389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1484 21280..21389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1484.3665.1prot_H-canaliculatus_F_contig1484.3665.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1484 20839..21389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1484.3665.1

>prot_H-canaliculatus_F_contig1484.3665.1 ID=prot_H-canaliculatus_F_contig1484.3665.1|Name=mRNA_H-canaliculatus_F_contig1484.3665.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=81bp
RKRTARARTARAPSVQPTSRQRRSTRKTANRQPRSSRATRWRRACQETLL
SIRDSSSPGTPDPTKEEVFSRSTSLRSSPSS
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mRNA from alignment at H-canaliculatus_F_contig1484:20839..21391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1484.3665.1 ID=mRNA_H-canaliculatus_F_contig1484.3665.1|Name=mRNA_H-canaliculatus_F_contig1484.3665.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=553bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1484:20839..21391+ (Hapterophycus canaliculatus Oshoro5f female)
AGGAAGCGGACAGCGCGTGCAAGGACCGCCCGTGCACCGAGTGTCCAACC
GACCAGCCGCCAAAGAAGAAGCACAAGAAAAACAGCAAACCGGCAACCCC
GATCGTCCCGAGCAACACGATGGAGACGAGCATGTGAGAAGGAAGGGAAA
TGCTGATTTTTGCTTCGACTTTCGACTGACGCCCGTACATGGAGCACGAT
TTTCGTACGGGTCTCCTAGGGGCGTTGTGGGCCCTCCGCTTGTCCGTTGC
CCATTTCCTGGGAGTTATGAATACCTTGGTCTTACTGGGTGTGCGGCGGA
TCACATCCGTCTCGTAGGTGATGTGTTTTTCACGATGGGTCAACGAATTC
ATTGTGTCATCGCTCTGCGTACTAATCAGATCCCGCCCGCCATCCAACCC
CCCAATCGCACCAACTGCCTTCCGCAATTTATACTTTGTAGGTCAAGAAA
CACTGCTATCCATTCGGGACAGCTCTTCGCCGGGAACCCCCGATCCTACC
AAGGAGGAAGTGTTCTCAAGGTCAACAAGCCTCCGAAGCTCGCCGTCGTC
GAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1484:20839..21391+

>mRNA_H-canaliculatus_F_contig1484.3665.1 ID=mRNA_H-canaliculatus_F_contig1484.3665.1|Name=mRNA_H-canaliculatus_F_contig1484.3665.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1484:20839..21391+ (Hapterophycus canaliculatus Oshoro5f female)
AGGAAGCGGACAGCGCGTGCAAGGACCGCCCGTGCACCGAGTGTCCAACC
GACCAGCCGCCAAAGAAGAAGCACAAGAAAAACAGCAAACCGGCAACCCC
GATCGTCCCGAGCAACACGATGGAGACGAGCATAGGAAGCGGACAGCGCG
TGCAAGGACCGCCCGTGCACCGAGTGTCCAACCGACCAGCCGCCAAAGAA
GAAGCACAAGAAAAACAGCAAACCGGCAACCCCGATCGTCCCGAGCAACA
CGATGGAGACGAGCATGTCAAGAAACACTGCTATCCATTCGGGACAGCTC
TTCGCCGGGAACCCCCGATCCTACCAAGGAGGAAGTGTTCTCAAGGTCAA
CAAGCCTCCGAAGCTCGCCGTCGTCGGTCAAGAAACACTGCTATCCATTC
GGGACAGCTCTTCGCCGGGAACCCCCGATCCTACCAAGGAGGAAGTGTTC
TCAAGGTCAACAAGCCTCCGAAGCTCGCCGTCGTCG
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