mRNA_H-canaliculatus_F_contig1484.3663.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1484.3663.1
Unique NamemRNA_H-canaliculatus_F_contig1484.3663.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1484.3663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1484contigH-canaliculatus_F_contig1484:5491..6146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-85
Ec32 orthologEc-06_005960.1
Exons1
Model size656
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1484.3663.1prot_H-canaliculatus_F_contig1484.3663.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1484 5718..5987 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929227.4058015-UTR-H-canaliculatus_F_contig1484:5490..57171622929227.4058015-UTR-H-canaliculatus_F_contig1484:5490..5717Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1484 5491..5717 +
1696845725.7710495-UTR-H-canaliculatus_F_contig1484:5490..57171696845725.7710495-UTR-H-canaliculatus_F_contig1484:5490..5717Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1484 5491..5717 +
1622929227.441591-UTR-H-canaliculatus_F_contig1484:5987..61461622929227.441591-UTR-H-canaliculatus_F_contig1484:5987..6146Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1484 5988..6146 +
1696845725.7972908-UTR-H-canaliculatus_F_contig1484:5987..61461696845725.7972908-UTR-H-canaliculatus_F_contig1484:5987..6146Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1484 5988..6146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929227.4232006-CDS-H-canaliculatus_F_contig1484:5717..59871622929227.4232006-CDS-H-canaliculatus_F_contig1484:5717..5987Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1484 5718..5987 +
1696845725.781093-CDS-H-canaliculatus_F_contig1484:5717..59871696845725.781093-CDS-H-canaliculatus_F_contig1484:5717..5987Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1484 5718..5987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1484.3663.1

>prot_H-canaliculatus_F_contig1484.3663.1 ID=prot_H-canaliculatus_F_contig1484.3663.1|Name=mRNA_H-canaliculatus_F_contig1484.3663.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
MRRQKTFRVFTGTDMLTSYALFSVVPFLFVSAGLKIGSNATLKNTAVGSS
IASFVFLLLSKKLFFVYKQNLLERSIFSQMAEVFDSCPD*
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mRNA from alignment at H-canaliculatus_F_contig1484:5491..6146+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1484.3663.1 ID=mRNA_H-canaliculatus_F_contig1484.3663.1|Name=mRNA_H-canaliculatus_F_contig1484.3663.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=656bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1484:5491..6146+ (Hapterophycus canaliculatus Oshoro5f female)
TTCATGGACGCAGCCGATGCCTACACATCGGGATATACGGCTCTAAACAA
GGCATCAATGTCAAAGTTTGGCATATCCGCCGGACTGGCACTCCTGGTTT
ATCTTGCCACCAAGGTCTACGCCGCAGCCACGGACGAGAAAGAAGATGAA
AAAACCAAGTTTTTCATGGTACCAATCGTGTCGAACGCCGTCACCGTTGT
TGTTGCTTTGGTAGCTATATTGGCGTCATGAGGAGACAGAAGACTTTCCG
AGTTTTCACCGGTACAGACATGCTAACGAGCTATGCCCTTTTCTCAGTTG
TACCATTCCTCTTCGTTTCCGCCGGATTGAAGATTGGATCGAATGCCACG
TTGAAGAATACCGCTGTGGGTTCAAGCATTGCTTCTTTCGTTTTCCTCTT
GTTGTCGAAAAAGCTATTTTTCGTTTACAAGCAAAACTTGTTGGAAAGGA
GCATCTTCTCCCAGATGGCTGAAGTTTTCGACAGCTGTCCGGACTAAGTG
TCTAGCACGTGCAGTCACAAGCACGCCGAGTTCCTGAGGGTGTTTGCAAA
CAGCGTCCAGCCCTACCTGGCAGAGATATCGCGTTTATTGCCTGAGCCAA
TCAAAGCAGCAACGGTTGCAAAGAGACTCAGCGATCGACAAGTTTTCGAT
ACGCTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1484:5491..6146+

>mRNA_H-canaliculatus_F_contig1484.3663.1 ID=mRNA_H-canaliculatus_F_contig1484.3663.1|Name=mRNA_H-canaliculatus_F_contig1484.3663.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1484:5491..6146+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGAGACAGAAGACTTTCCGAGTTTTCACCGGTACAGACATGCTAAC
GAGCTATGCCCTTTTCTCAGTTGTACCATTCCTCTTCGTTTCCGCCGGAT
TGAAGATTGGATCGAATGCCACGTTGAAGAATACCGCTGTGGGTTCAAGC
ATTGCTTCTTTCGTTTTCCTCTTGTTGTCGAAAAAGCTATTTTTCGTTTA
CAAGCAAAACTTGTTGGAAAGGAGCATCTTCTCCCAGATGGCTGAAGTTT
TCGACAGCTGTCCGGACTAAATGAGGAGACAGAAGACTTTCCGAGTTTTC
ACCGGTACAGACATGCTAACGAGCTATGCCCTTTTCTCAGTTGTACCATT
CCTCTTCGTTTCCGCCGGATTGAAGATTGGATCGAATGCCACGTTGAAGA
ATACCGCTGTGGGTTCAAGCATTGCTTCTTTCGTTTTCCTCTTGTTGTCG
AAAAAGCTATTTTTCGTTTACAAGCAAAACTTGTTGGAAAGGAGCATCTT
CTCCCAGATGGCTGAAGTTTTCGACAGCTGTCCGGACTAA
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