mRNA_H-canaliculatus_F_contig14825.3654.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14825.3654.1
Unique NamemRNA_H-canaliculatus_F_contig14825.3654.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14825.3654.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 7.730e-69
Identity = 134/168 (79.76%), Postives = 139/168 (82.74%), Query Frame = 1 
Query:   85 MSTHCVSVLLLVCIAQECLAFVPSWTATFRSSRSQPSASAPTAATFSLLQPSGPICPVFGACGTCGAQYFYPVRGMTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQDXXXXXXXXIEDAEEETAEVVKKIDCIEAAIAGGSKYLGMSDPEALLKQLGRKED 588
            MS +CVSVLLLV IAQ CLAFVPSWTATFRSSRSQP AS P AATFSL QPSGPICPVFGAC TCGAQ+FYPV GMTS SAMSEG EEEGGGDH AREAADGSPAADEIRAVQ XXXXXXXX               D IEAAIAGGS+YLGM+DPEALLKQLGRKE+
Sbjct:    1 MSRNCVSVLLLVGIAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEE 168
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BLAST of mRNA_H-canaliculatus_F_contig14825.3654.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 9.960e-37
Identity = 77/94 (81.91%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:  292 FYPVRGMTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQDXXXXXXXXIEDAEEETAEVVKKIDCIEAAIAGGSKYLGMSDPEALLKQL 573
            FYPVRGMT  SAMSEGDEEEGGGDH AREAAD  PAADEIRAVQD        IEDAEEETAEVVKKID IEAAIAGG++YLGM+DPEALLKQL
Sbjct:    2 FYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL 95
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BLAST of mRNA_H-canaliculatus_F_contig14825.3654.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 3.950e-34
Identity = 76/93 (81.72%), Postives = 80/93 (86.02%), Query Frame = 1 
Query:  310 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQDXXXXXXXXIEDAEEETAEVVKKIDCIEAAIAGGSKYLGMSDPEALLKQLGRKED 588
            MTS SAMSEGDEEEGGGDHDAREAAD  PAADEIRAVQD         EDAE+ETAEVVKKID IEAAIAGGS+YLGM+DPEALLKQLGRKE+
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEE 93
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BLAST of mRNA_H-canaliculatus_F_contig14825.3654.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.660e-33
Identity = 86/100 (86.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:  310 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQDXXXXXXXXIED-------AEEETAEVVKKIDCIEAAIAGGSKYLGMSDPEALLKQLGRKED 588
            MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQ XXXXXXXX          AEEETAEVVKKID IEAAIAGGSKYLGM+DPEALLKQLGRKE+
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEE 100
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BLAST of mRNA_H-canaliculatus_F_contig14825.3654.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 5.820e-21
Identity = 66/93 (70.97%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:  295 YPVRGMTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQDXXXXXXXXIEDAEEETAEVVKKIDCIEAA-IAGGSKYLGMSDPEALLKQ 570
            YPVRG+TS SA+SEG+EE+GGGDHD REAA GSPAADEIRAVQ XXXXXXXX             KID +EAA IAGGS YLGM+DPEALLK+
Sbjct:    3 YPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKE 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14825.3654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM56_ECTSI7.730e-6979.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI9.960e-3781.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI3.950e-3481.72Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI1.660e-3386.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI5.820e-2170.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14825contigH-canaliculatus_F_contig14825:252..1613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size1331
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14825.3654.1prot_H-canaliculatus_F_contig14825.3654.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14825 336..912 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929226.1441584-UTR-H-canaliculatus_F_contig14825:251..3351622929226.1441584-UTR-H-canaliculatus_F_contig14825:251..335Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14825 252..335 +
1696845725.220106-UTR-H-canaliculatus_F_contig14825:251..3351696845725.220106-UTR-H-canaliculatus_F_contig14825:251..335Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14825 252..335 +
1622929226.190835-UTR-H-canaliculatus_F_contig14825:912..16131622929226.190835-UTR-H-canaliculatus_F_contig14825:912..1613Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14825 913..1613 +
1696845725.2557373-UTR-H-canaliculatus_F_contig14825:912..16131696845725.2557373-UTR-H-canaliculatus_F_contig14825:912..1613Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14825 913..1613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929226.158512-CDS-H-canaliculatus_F_contig14825:335..8381622929226.158512-CDS-H-canaliculatus_F_contig14825:335..838Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14825 336..838 +
1696845725.229797-CDS-H-canaliculatus_F_contig14825:335..8381696845725.229797-CDS-H-canaliculatus_F_contig14825:335..838Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14825 336..838 +
1622929226.1732035-CDS-H-canaliculatus_F_contig14825:869..9121622929226.1732035-CDS-H-canaliculatus_F_contig14825:869..912Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14825 870..912 +
1696845725.2399027-CDS-H-canaliculatus_F_contig14825:869..9121696845725.2399027-CDS-H-canaliculatus_F_contig14825:869..912Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14825 870..912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14825.3654.1

>prot_H-canaliculatus_F_contig14825.3654.1 ID=prot_H-canaliculatus_F_contig14825.3654.1|Name=mRNA_H-canaliculatus_F_contig14825.3654.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=182bp
MSTHCVSVLLLVCIAQECLAFVPSWTATFRSSRSQPSASAPTAATFSLLQ
PSGPICPVFGACGTCGAQYFYPVRGMTSSSAMSEGDEEEGGGDHDAREAA
DGSPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDCIEAAIAGGSKY
LGMSDPEALLKQLGRKEDNYAGRRSNSASSF*
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mRNA from alignment at H-canaliculatus_F_contig14825:252..1613+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14825.3654.1 ID=mRNA_H-canaliculatus_F_contig14825.3654.1|Name=mRNA_H-canaliculatus_F_contig14825.3654.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1362bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14825:252..1613+ (Hapterophycus canaliculatus Oshoro5f female)
GGAAGAGCAAAGAATATACAGGGAAAAGAGCACCGCCGCCGCCCCACCCC
TACTAAGCGAAGCGAAGAGAGCATTGGTTTCAAGATGTCAACGCATTGTG
TGTCGGTTCTTCTCCTGGTCTGTATCGCACAAGAATGCTTGGCCTTCGTC
CCGAGCTGGACTGCGACGTTCAGGTCGTCACGCTCGCAGCCATCTGCTTC
CGCGCCTACGGCGGCGACGTTTTCGCTCTTGCAGCCCTCTGGTCCGATCT
GCCCTGTGTTCGGGGCGTGTGGCACTTGTGGGGCGCAATATTTTTACCCG
GTGCGAGGGATGACGAGCTCGAGCGCGATGAGCGAGGGCGACGAGGAGGA
GGGGGGCGGCGATCATGATGCGCGAGAAGCTGCCGATGGCAGTCCAGCGG
CGGACGAGATCCGTGCGGTCCAGGATGAGATCCGTGGTGTAGAGCGAAAG
ATCGAGGATGCAGAGGAGGAGACGGCAGAGGTTGTCAAGAAGATTGATTG
TATTGAGGCTGCTATTGCGGGGGGCTCCAAGTACCTCGGAATGAGCGACC
CCGAAGCCCTCTTGAAGCAACTAGGCAGGAAGGAGGAGCAACTACGCAGG
AAAGAGGGGAAGGAGGAGCAACTACGCAGGAAGGAGGAGCAACTCCGCGA
GCTCCTTTTGAAGAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCCGTG
CCAACAACGCCCCCGCAGGTATAGAAGCGTCCCATTATGTGTGAAAATCC
ACAGCAGTGTACAGATAAGGAAATTTTGGCGCTGACCGACCGTAAGTATT
ATTACGCGGGCTCCCTCGAGCGCTGAGCGTGAAGCGGGGGGACTCACCCC
TCTTAAATCAAGACGTTTTCTTTGACTTTCCACCTTTGGATCCTCGCGGA
GTACCGCCCTCGCGAACGCTCAGCGAAAAGTCTTTCCAGCGCGGCTCCGC
TGTCCCCCTGCCGCGGGATCGACGCTGGGCCGGCGACCCCAACAGCGCAA
CACTTCAAATCCCCCAAATCTCCACAATTTCCGTTTCGAACCTTCGCCTC
TCACCGTGTGTGTCACGCCTCTGAGTTTCATTGTTAGTTTTAAATTTCCA
CACCGGGACTGTGTCAGCAACAATCACTCGCACGCTGCACGATGCTGATC
AACTCAGGGTACGTGCACAGCAGTCAGCCGTCTAGGTTGCGAGACACCTA
GAGTGGCGTTGGCTCTCAGAGGTACAAGGAGCGCGCAACCGAAAAAAGCC
GCTGAACATGACGAAATTTCGGTCGCGCACGTCGGCTTTATTACCTCGTC
AGGAACTGGATGATGAGGACTCGCACGATTGCACGATGCTCAGGACATAC
ATGTCCACAGCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14825:252..1613+

>mRNA_H-canaliculatus_F_contig14825.3654.1 ID=mRNA_H-canaliculatus_F_contig14825.3654.1|Name=mRNA_H-canaliculatus_F_contig14825.3654.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1092bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14825:252..1613+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCAACGCATTGTGTGTCGGTTCTTCTCCTGGTCTGTATCGCACAAGA
ATGCTTGGCCTTCGTCCCGAGCTGGACTGCGACGTTCAGGTCGTCACGCT
CGCAGCCATCTGCTTCCGCGCCTACGGCGGCGACGTTTTCGCTCTTGCAG
CCCTCTGGTCCGATCTGCCCTGTGTTCGGGGCGTGTGGCACTTGTGGGGC
GCAATATTTTTACCCGGTGCGAGGGATGACGAGCTCGAGCGCGATGAGCG
AGGGCGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCTGCC
GATGGCAGTCCAGCGGCGGACGAGATCCGTGCGGTCCAGGATGAGATCCG
TGGTGTAGAGCGAAAGATCGAGGATGCAGAGGAGGAGACGGCAGAGGTTG
TCAAGAAGATTGATTGTATTGAGGCTGCTATTGCGGGGGGCTCCAAGTAC
CTCGGAATGAGCGACCCCGAAGCCCTCTTGAAGCAACTAGGCAGGAAGGA
GGAATGTCAACGCATTGTGTGTCGGTTCTTCTCCTGGTCTGTATCGCACA
AGAATGCTTGGCCTTCGTCCCGAGCTGGACTGCGACGTTCAGGTCGTCAC
GCTCGCAGCCATCTGCTTCCGCGCCTACGGCGGCGACGTTTTCGCTCTTG
CAGCCCTCTGGTCCGATCTGCCCTGTGTTCGGGGCGTGTGGCACTTGTGG
GGCGCAATATTTTTACCCGGTGCGAGGGATGACGAGCTCGAGCGCGATGA
GCGAGGGCGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCT
GCCGATGGCAGTCCAGCGGCGGACGAGATCCGTGCGGTCCAGGATGAGAT
CCGTGGTGTAGAGCGAAAGATCGAGGATGCAGAGGAGGAGACGGCAGAGG
TTGTCAAGAAGATTGATTGTATTGAGGCTGCTATTGCGGGGGGCTCCAAG
TACCTCGGAATGAGCGACCCCGAAGCCCTCTTGAAGCAACTAGGCAGGAA
GGAGGACAACTACGCAGGAAGGAGGAGCAACTCCGCGAGCTCCTTTTGAC
AACTACGCAGGAAGGAGGAGCAACTCCGCGAGCTCCTTTTGA
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