mRNA_H-canaliculatus_F_contig1482.3652.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1482.3652.1
Unique NamemRNA_H-canaliculatus_F_contig1482.3652.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1482.3652.1 vs. uniprot
Match: A0A6H5L825_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L825_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.070e-39
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 1
Query:   28 QALFDYYATSFDESLKGLDYSSPEALREVLGAIRPHYREVFDAGCGTGLLGPLFREISDTLIGVDLSEGMLEAALDR 258
            +ALFDYYA SFDESLKGLDYSSPEALREVLG +RP Y+EVFDAGCGTGLLGPLFR+I+DTLIGVDLSEGMLEAALDR
Sbjct:  247 KALFDYYAVSFDESLKGLDYSSPEALREVLGGLRPRYKEVFDAGCGTGLLGPLFRDITDTLIGVDLSEGMLEAALDR 323          
BLAST of mRNA_H-canaliculatus_F_contig1482.3652.1 vs. uniprot
Match: A0A6J5DE82_9BURK (Methyltransf_11 domain-containing protein n=1 Tax=Paraburkholderia humisilvae TaxID=627669 RepID=A0A6J5DE82_9BURK)

HSP 1 Score: 81.6 bits (200), Expect = 3.020e-16
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 PPGGSRASSQALFDYYATSFDESL-KGLDYSSPEALREVLGAIRPHYREVFDAGCGTGLLGPLFREISDTLIGVDLSEGMLEAA 249
            PP  +    + LFD +A SFDE L K L Y +P+AL + LG I     +V DAGCGTGL GPL R  S TL+GVDLSEGMLE A
Sbjct:  240 PPRANDDYVRELFDGFAASFDEQLLKNLGYRAPQALVDALGDIGDSL-DVLDAGCGTGLCGPLLRARSRTLVGVDLSEGMLERA 322          
BLAST of mRNA_H-canaliculatus_F_contig1482.3652.1 vs. uniprot
Match: UPI0018957CBA (tetratricopeptide repeat protein n=1 Tax=Methylobacter sp. BlB1 TaxID=2785914 RepID=UPI0018957CBA)

HSP 1 Score: 81.6 bits (200), Expect = 3.030e-16
Identity = 43/89 (48.31%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    1 PPGGSRASSQALFDYYATSFDESLKGLDYSSPEALREVLGAIRPHYRE---VFDAGCGTGLLGPLFREISDTLIGVDLSEGMLEAALDR 258
            P   S+A  Q +FD +A SFD  L GLDY +PE + + +  + P  R+   V DAGCGTGL GPL    + TL+GVDLS GML  A  R
Sbjct:  239 PDRASQAYIQDIFDKFAASFDTVLNGLDYRAPELVTQAVSVLFPEPRQELRVLDAGCGTGLCGPLLLPYARTLVGVDLSSGMLNKAKGR 327          
BLAST of mRNA_H-canaliculatus_F_contig1482.3652.1 vs. uniprot
Match: A0A7S3XSZ3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSZ3_HETAK)

HSP 1 Score: 81.3 bits (199), Expect = 3.190e-16
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   28 QALFDYYATSFDESLKGLDYSSPEALREVL-----GAIRPHYREVFDAGCGTGLLGPLFREISDTLIGVDLSEGMLEAALDR 258
            ++LF+ YA +FD SL GL+Y +PE + + +      A +  +  V DAGCGTGL+GPLF  IS  LIG+D+S+GML+ A +R
Sbjct:  169 KSLFNDYAETFDSSLSGLEYKAPELISQTMHKLLNAAGKKTFNTVVDAGCGTGLIGPLFEGISRKLIGIDISDGMLQKAKER 250          
BLAST of mRNA_H-canaliculatus_F_contig1482.3652.1 vs. uniprot
Match: UPI0006924B9E (tetratricopeptide repeat protein n=2 Tax=Methylobacter TaxID=429 RepID=UPI0006924B9E)

HSP 1 Score: 81.3 bits (199), Expect = 4.170e-16
Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 PPGGSRASSQALFDYYATSFDESLKGLDYSSPEALREVLGAIRPHYRE---VFDAGCGTGLLGPLFREISDTLIGVDLSEGMLEAALDR 258
            P   S A  Q +FD +A SFD  L  LDY +PE + + +  + P  R+   V DAGCGTGL GPL R  + TL+GVDLS GML  A  R
Sbjct:  241 PDRASEAYIQDIFDKFAASFDTVLNRLDYRAPELVTQAVATLFPEPRQDLRVLDAGCGTGLCGPLLRPYAGTLVGVDLSSGMLRKAKGR 329          
BLAST of mRNA_H-canaliculatus_F_contig1482.3652.1 vs. uniprot
Match: A0A2A2WH43_9BACT (Methyltransf_25 domain-containing protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A2A2WH43_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 4.280e-16
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   13 SRASS---QALFDYYATSFDESLKGLDYSSPEALREV---LGAIRPHYREVFDAGCGTGLLGPLFREISDTLIGVDLSEGMLEAALDR 258
            SRAS    + +FD +A +FDE L+ LDY++P  LR +   LG      R + DAGCGTGL+G L R  +  L+GVDLS GML+ A+DR
Sbjct:  247 SRASDDYVREVFDQFAETFDEQLQSLDYAAPRLLRSMIADLGLSADGSRSILDAGCGTGLMGELLRPFASRLVGVDLSAGMLQRAVDR 334          
BLAST of mRNA_H-canaliculatus_F_contig1482.3652.1 vs. uniprot
Match: A0A3S0VPJ8_9GAMM (Tetratricopeptide repeat protein n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3S0VPJ8_9GAMM)

HSP 1 Score: 80.9 bits (198), Expect = 6.050e-16
Identity = 44/78 (56.41%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   34 LFDYYATSFDESLKGLDYSSPEALREVLGAI--RPHYR-EVFDAGCGTGLLGPLFREISDTLIGVDLSEGMLEAALDR 258
            LFD YA  FDE L+ LDY +PE L E + A    P+   EV DAGCGTGL GPL R  +  LIGVDLS GM+E A +R
Sbjct:  279 LFDQYADQFDEDLQALDYRAPELLSEAITARLGTPNGTLEVLDAGCGTGLCGPLLRPYAQRLIGVDLSSGMIEKAQER 356          
BLAST of mRNA_H-canaliculatus_F_contig1482.3652.1 vs. uniprot
Match: UPI001FBB9E75 (tetratricopeptide repeat protein n=1 Tax=Methylobacterium sp. J-068 TaxID=2836649 RepID=UPI001FBB9E75)

HSP 1 Score: 80.5 bits (197), Expect = 7.470e-16
Identity = 43/89 (48.31%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    1 PPGGSRASSQALFDYYATSFDESLKGLDYSSPEALREVLGAIRPHYRE---VFDAGCGTGLLGPLFREISDTLIGVDLSEGMLEAALDR 258
            P   S A    LFD YATSFD SL GL+Y +P+ +   LG +     +   + DAGCGTGL GPL    +  L+GVDLSEGML  A++R
Sbjct:  222 PSRASDAYVAKLFDAYATSFDRSLSGLEYRAPDLVAAALGGLAGQPEKGLAILDAGCGTGLCGPLVSAWARDLVGVDLSEGMLAQAVER 310          
BLAST of mRNA_H-canaliculatus_F_contig1482.3652.1 vs. uniprot
Match: UPI001EE2DDC7 (tetratricopeptide repeat protein n=1 Tax=Methylobacterium goesingense TaxID=243690 RepID=UPI001EE2DDC7)

HSP 1 Score: 80.1 bits (196), Expect = 1.140e-15
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 PPGGSRASSQALFDYYATSFDESLKGLDYSSPEALREVLGAI--RPHYR-EVFDAGCGTGLLGPLFREISDTLIGVDLSEGMLEAALDR 258
            P   S A    LFD YA SFD SL GL+Y +P+ +  VL A+  RP     + DAGCGTGL GPL  E + +L+GVDLSEGML  A +R
Sbjct:  294 PTRASDAYVAKLFDAYAPSFDRSLSGLEYRAPDLVATVLEAMAGRPDKGLAILDAGCGTGLCGPLVAEWARSLVGVDLSEGMLAQAAER 382          
BLAST of mRNA_H-canaliculatus_F_contig1482.3652.1 vs. uniprot
Match: A0A4Q9VMB0_9HYPH (Tetratricopeptide repeat protein n=1 Tax=Siculibacillus lacustris TaxID=1549641 RepID=A0A4Q9VMB0_9HYPH)

HSP 1 Score: 79.3 bits (194), Expect = 2.100e-15
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 PPGGSRASSQALFDYYATSFDESLKGLDYSSPEALREVLGAIRPHYR--EVFDAGCGTGLLGPLFREISDTLIGVDLSEGMLEAA 249
            P   + A  + +FD YA+SFD SL  L Y +PEA+ E+LG + P      + DAGCGTGL+GPL RE +  L G+DLS GML  A
Sbjct:  270 PERAADAYVERIFDSYASSFDSSLGSLGYQAPEAIAELLGRVAPDLAGAAILDAGCGTGLVGPLVRERAARLDGLDLSGGMLAKA 354          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1482.3652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L825_9PHAE1.070e-3989.61Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A6J5DE82_9BURK3.020e-1655.95Methyltransf_11 domain-containing protein n=1 Tax=... [more]
UPI0018957CBA3.030e-1648.31tetratricopeptide repeat protein n=1 Tax=Methyloba... [more]
A0A7S3XSZ3_HETAK3.190e-1647.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI0006924B9E4.170e-1648.31tetratricopeptide repeat protein n=2 Tax=Methyloba... [more]
A0A2A2WH43_9BACT4.280e-1648.86Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A3S0VPJ8_9GAMM6.050e-1656.41Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
UPI001FBB9E757.470e-1648.31tetratricopeptide repeat protein n=1 Tax=Methyloba... [more]
UPI001EE2DDC71.140e-1551.69tetratricopeptide repeat protein n=1 Tax=Methyloba... [more]
A0A4Q9VMB0_9HYPH2.100e-1549.41Tetratricopeptide repeat protein n=1 Tax=Siculibac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1482contigH-canaliculatus_F_contig1482:25385..26305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue4.1e-32
Seed eggNOG ortholog2880.D8LBV8
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-20_003450.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929225.9600437-CDS-H-canaliculatus_F_contig1482:25384..254401622929225.9600437-CDS-H-canaliculatus_F_contig1482:25384..25440Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1482 25385..25440 -
1696845725.1193259-CDS-H-canaliculatus_F_contig1482:25384..254401696845725.1193259-CDS-H-canaliculatus_F_contig1482:25384..25440Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1482 25385..25440 -
1622929225.973301-CDS-H-canaliculatus_F_contig1482:26103..263051622929225.973301-CDS-H-canaliculatus_F_contig1482:26103..26305Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1482 26104..26305 -
1696845725.1315625-CDS-H-canaliculatus_F_contig1482:26103..263051696845725.1315625-CDS-H-canaliculatus_F_contig1482:26103..26305Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1482 26104..26305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1482.3652.1prot_H-canaliculatus_F_contig1482.3652.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1482 25385..26305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1482.3652.1

>prot_H-canaliculatus_F_contig1482.3652.1 ID=prot_H-canaliculatus_F_contig1482.3652.1|Name=mRNA_H-canaliculatus_F_contig1482.3652.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=86bp
PPGGSRASSQALFDYYATSFDESLKGLDYSSPEALREVLGAIRPHYREVF
DAGCGTGLLGPLFREISDTLIGVDLSEGMLEAALDR
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mRNA from alignment at H-canaliculatus_F_contig1482:25385..26305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1482.3652.1 ID=mRNA_H-canaliculatus_F_contig1482.3652.1|Name=mRNA_H-canaliculatus_F_contig1482.3652.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=921bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1482:25385..26305- (Hapterophycus canaliculatus Oshoro5f female)
CCGCCCGGCGGCTCGCGCGCGTCGTCCCAGGCTTTGTTCGACTACTACGC CACCTCGTTTGACGAGAGCCTTAAGGGCCTGGACTACTCCTCGCCGGAGG CACTGCGAGAGGTGTTGGGGGCGATCAGGCCGCACTACCGCGAGGTCTTC GACGCCGGCTGCGGCACGGGGCTGTTGGGCCCGCTGTTCCGAGAAATCTC AGGTAATTCGACACCCCCCTCCTCCCGCCCCCTCCCCGTAGCTCGTTGTA GCTGCTGGGCCTTTCCGTGGGCGCGCCGTTTCGTCGTGCGGTCCTCTTCT CCTCGCGTTTTCTGTTTTCGCACGCGTGTGCGCACGTTTTTCGTCTGCTC GGTGGCCAGGGCGCTGGGAGGAGGACGGCGTCCGCGTATCGGCGAGAGCG TGCGGGCCGGGCGCCCTACTCGTGTTCGACTTTCGCCCTTGATCCAGGGC AAGCAGGCAGTGATCCACAACGTGATGCATAGCGAAACGTGACGTGTGTA CCACGGCCATTCAGGTGTCCTGTCCCGTAGCGGTCGTTTCGTTCGAGACG CGTGAACGCAGAGCCCGTCAGCTCGTTCATCCCGGCCTCTGCCCGCATCC CCCGCCCCCCCCAACAAAATACTCTTAGGCTCCCCCGTGAGTCCTCCCTC CCCCTTTTTCTGTGGCAACTGCTGTGAGTCTACCTCGCCTGTTTTTATGC CCTTTTAGTAGGTTTGGGTCTTATTTTTCCCGTAGGACTTTTCCCCCTGA CTTGCGCTTCTGCGTGCGCCCGTCCGATATCCTTCTCCTTATCTGTGCTG GCCCCCGAATGGGTACCGTGGCCGGTGCTGCTGTTGCCGCTTGCCATTGG TTCTGATGTCTCAAGACACCCTGATCGGGGTGGACCTGAGCGAGGGGATG CTAGAAGCGGCGTTGGATAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1482:25385..26305-

>mRNA_H-canaliculatus_F_contig1482.3652.1 ID=mRNA_H-canaliculatus_F_contig1482.3652.1|Name=mRNA_H-canaliculatus_F_contig1482.3652.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=516bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1482:25385..26305- (Hapterophycus canaliculatus Oshoro5f female)
CCGCCCGGCGGCTCGCGCGCGTCGTCCCAGGCTTTGTTCGACTACTACGC
CACCTCGTTTGACGAGAGCCTTAAGGGCCTGGACTACTCCTCGCCGGAGG
CACTGCGAGAGGTGTTGGGGGCGATCAGGCCGCACTACCGCGAGGTCTTC
GACGCCGGCTGCGGCACGGGGCTGTTGGGCCCGCTGTTCCGAGAAATCTC
AGCCGCCCGGCGGCTCGCGCGCGTCGTCCCAGGCTTTGTTCGACTACTAC
GCCACCTCGTTTGACGAGAGCCTTAAGGGCCTGGACTACTCCTCGCCGGA
GGCACTGCGAGAGGTGTTGGGGGCGATCAGGCCGCACTACCGCGAGGTCT
TCGACGCCGGCTGCGGCACGGGGCTGTTGGGCCCGCTGTTCCGAGAAATC
TCAGACACCCTGATCGGGGTGGACCTGAGCGAGGGGATGCTAGAAGCGGC
GTTGGATAGAACACCCTGATCGGGGTGGACCTGAGCGAGGGGATGCTAGA
AGCGGCGTTGGATAGA
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