mRNA_H-canaliculatus_F_contig148.3637.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig148.3637.1
Unique NamemRNA_H-canaliculatus_F_contig148.3637.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig148.3637.1 vs. uniprot
Match: D7G6V0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6V0_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 2.380e-91
Identity = 174/257 (67.70%), Postives = 185/257 (71.98%), Query Frame = 3 
Query:  438 AQMTLISLRILVGYAKSTHRTLAQLCRVPYQPRHRPATAARPAPHVDDEGT--------HPEQDAVDSGNRFLLRVD-GDEDSGGTQRCGLPWDPLAPRLLQEAQRLAREGKQKPFTAAVVLAAALPFSGCVVLVGAPVLAGDAALQWGAGTPVGRTVGQGAKNAVELSKLGWVASKLATKQTLRLASQELVRVGGVAGLAWRAGEGALWTARHPIEAAMATVGMAADTGKAVYEQAVWMADLLVTVREEVFAGPVD 1181
            AQMTLISLRILVGYAKSTHR+LAQLCRVP+QPR      AR A H D            +P    V      L +VD       G +  GLPWDPLAPRLLQEA+RLA EGK++PFTAAVVLAAALPFSG             AALQWGA TPVGRTVG G KNAVEL KLGWVASKLATKQTLRLASQEL R GGV GLA RAGEGALWTARHP+EAAMATVGMAAD   A YEQAVWM DLL TVREEVF+ P +
Sbjct:  195 AQMTLISLRILVGYAKSTHRSLAQLCRVPFQPRRE---RARMAVHADPNNXXXXXXXXXNPAAARVGE----LFQVDEXXXXXDGHEGGGLPWDPLAPRLLQEARRLAEEGKERPFTAAVVLAAALPFSGXXXXXXXXXXXXXAALQWGAATPVGRTVGHGTKNAVELGKLGWVASKLATKQTLRLASQELDRAGGVTGLACRAGEGALWTARHPVEAAMATVGMAADAASAAYEQAVWMGDLLATVREEVFSRPAE 444
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BLAST of mRNA_H-canaliculatus_F_contig148.3637.1 vs. uniprot
Match: A0A7S1D4B8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4B8_CYCTE)

HSP 1 Score: 64.3 bits (155), Expect = 2.990e-7
Identity = 45/146 (30.82%), Postives = 71/146 (48.63%), Query Frame = 3 
Query:  651 EDSGGTQRCGLPWDPLAPRLLQEAQRLAREGKQKPFTAAVVLAAALPFSGCVVLVGAPVLAGDAALQW----GAGTPVGRTVGQGAKNAVELSKLGWVASKLATKQTLRLASQELVRVGGVAGLAWRAGEGALWTARHPIEAAMAT 1076
            ++  G  R  + W PL P ++        E  +KP  A  +     P +    LVG PV+  DAA+Q      +G PV + + +GA      ++L ++ S L  +Q+LR+AS+++ R GGV  +A      AL  A HP+E    T
Sbjct:  245 QEVNGKDRIRVLWPPLGPAVMSACNWGKEEATKKPLLAVALGLTIWPAAVVTALVGTPVVLADAAIQGIYNSMSGGPVVKVIERGAAQTYHAARLTYLCSGLVARQSLRIASRQIERNGGVGQVAQNVAGIALDRALHPVETVQMT 390
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig148.3637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6V0_ECTSI2.380e-9167.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1D4B8_CYCTE2.990e-730.82Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig148contigH-canaliculatus_F_contig148:1230..3590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.9
Seed ortholog evalue7.1e-77
Seed eggNOG ortholog2880.D7G6V0
EggNOG OGs2EWU7@1,2SYK9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_012150.1
Exons3
Model size1779
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig148.3637.1prot_H-canaliculatus_F_contig148.3637.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig148 1707..3007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929222.011322-UTR-H-canaliculatus_F_contig148:1229..13861622929222.011322-UTR-H-canaliculatus_F_contig148:1229..1386Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig148 1230..1386 +
1696845723.838429-UTR-H-canaliculatus_F_contig148:1229..13861696845723.838429-UTR-H-canaliculatus_F_contig148:1229..1386Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig148 1230..1386 +
1622929222.0260818-UTR-H-canaliculatus_F_contig148:1420..17061622929222.0260818-UTR-H-canaliculatus_F_contig148:1420..1706Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig148 1421..1706 +
1696845723.8503518-UTR-H-canaliculatus_F_contig148:1420..17061696845723.8503518-UTR-H-canaliculatus_F_contig148:1420..1706Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig148 1421..1706 +
1622929222.0858836-UTR-H-canaliculatus_F_contig148:3007..35901622929222.0858836-UTR-H-canaliculatus_F_contig148:3007..3590Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig148 3008..3590 +
1696845723.885212-UTR-H-canaliculatus_F_contig148:3007..35901696845723.885212-UTR-H-canaliculatus_F_contig148:3007..3590Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig148 3008..3590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929222.0370705-CDS-H-canaliculatus_F_contig148:1706..21741622929222.0370705-CDS-H-canaliculatus_F_contig148:1706..2174Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig148 1707..2174 +
1696845723.863043-CDS-H-canaliculatus_F_contig148:1706..21741696845723.863043-CDS-H-canaliculatus_F_contig148:1706..2174Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig148 1707..2174 +
1622929222.048914-CDS-H-canaliculatus_F_contig148:2722..30071622929222.048914-CDS-H-canaliculatus_F_contig148:2722..3007Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig148 2723..3007 +
1696845723.8729136-CDS-H-canaliculatus_F_contig148:2722..30071696845723.8729136-CDS-H-canaliculatus_F_contig148:2722..3007Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig148 2723..3007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig148.3637.1

>prot_H-canaliculatus_F_contig148.3637.1 ID=prot_H-canaliculatus_F_contig148.3637.1|Name=mRNA_H-canaliculatus_F_contig148.3637.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=251bp
MTLISLRILVGYAKSTHRTLAQLCRVPYQPRHRPATAARPAPHVDDEGTH
PEQDAVDSGNRFLLRVDGDEDSGGTQRCGLPWDPLAPRLLQEAQRLAREG
KQKPFTAAVVLAAALPFSGCVVLVGAPVLAGDAALQWGAGTPVGRTVGQG
AKNAVELSKLGWVASKLATKQTLRLASQELVRVGGVAGLAWRAGEGALWT
ARHPIEAAMATVGMAADTGKAVYEQAVWMADLLVTVREEVFAGPVDVREE
*
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mRNA from alignment at H-canaliculatus_F_contig148:1230..3590+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig148.3637.1 ID=mRNA_H-canaliculatus_F_contig148.3637.1|Name=mRNA_H-canaliculatus_F_contig148.3637.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2361bp|location=Sequence derived from alignment at H-canaliculatus_F_contig148:1230..3590+ (Hapterophycus canaliculatus Oshoro5f female)
CAAGCTTTTATTAGAGGTGGATCCCATTTGCGTGTTTTGAGTCCTACCGT
AGTTTTCCCCCCACATTTTTACTCACGATTGCGTCGTCTCTTTAAGGCAC
TCTTTTGACATGCTTAATGCACTGCGAAGCAAGTCGAAAGGTTGTCGGTG
CATGTTGCACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACAGGCACGTCCTCTTCCTCTCGCGCTCCAACGGAG
TTTACGCGAGAAAATCAGCACAAAATGTGCTGTTGCTGGGGATTGTTTGT
TTCTCGAGAACGGTACAAGTACTCCATTAACGCTCTGGTGTTGAAGGTGC
TCGCGCGTCATTCTTGACGGAAAATGTATAGTTATTTACCTTGCTGCCTG
CCTCTCCGCTGTCACAAAGATGACGTTTCCCCTCGTATGATTTGTGTGAA
CAATTTCCTGCTCCCGCCAACGCACAGATGACCCTGATATCTCTTCGAAT
ACTGGTCGGCTACGCGAAGAGCACCCACAGAACTCTCGCCCAGCTGTGCC
GCGTGCCTTACCAACCTCGACACCGCCCCGCGACGGCGGCAAGACCAGCA
CCTCATGTGGACGACGAGGGCACTCACCCGGAACAAGACGCTGTTGATAG
CGGCAACCGTTTCCTCCTGCGTGTCGACGGAGACGAGGATAGCGGAGGTA
CCCAAAGATGCGGGCTCCCTTGGGATCCCCTCGCGCCTAGGCTACTACAA
GAAGCGCAGCGGTTGGCTAGGGAGGGCAAGCAGAAACCGTTCACCGCGGC
CGTTGTCCTGGCTGCTGCCTTGCCGTTTTCTGGGTGCGTGGTGCTGGTCG
GGGCGCCGGTGTTGGCCGGAGACGCGGCTCTGCAATGGGGAGCCGGTACT
CCTGTCGGAAGGACGGTAGGGCAGGGGGCCAAGAACGCCGTAGAGGTGAG
ATTCGAGTATTGCGGCATGCTGCTCTGCCAGGAGCATGCCTGGGTCGGTG
TGTTTTTCCACTTTTCAAGAAAGTCGAGACGAACTCTGCGCGAACCCTGA
AGATTCTTCGTAATGTTAAGGGGAAGGATGAATCCTCCAGCCCAATGAGT
CAGGGGTGAATTTGCGTTCAGGTCGCATTATATTTCCCTTGTGGTTTTGC
GAGGGCTGAGTCCACCTTGTTTTGCTCACGGTAGCGCCATATCTGGTACC
TGGTGAGATAAATCAAATACGCAGCGGCGGCGAGACAGAGTTTGAGGATC
TGACCAGCTTACTGTCTTCGCGCCCGACGGCGAGCAACAACATACTCGAT
TGCGTTCCCGCCGCCCTCCGGGGTGCGAGCGCGAATTCCGTCCGCCTCCA
CGGTTGTGTCAAGGAAACAGCAGGATCTGGCACCATTGGTGTTCGAAGTT
TCAACACTTACGAGCATGTACGAGCAAGGAGAGCACGCCTCCTCACGCCC
AAGCTACCGCTTCCGACTTTCTCCTTCTCCCTCCATCATGCAGCTCAGCA
AGCTGGGCTGGGTAGCGAGCAAGCTCGCCACGAAGCAGACCCTGAGACTT
GCGAGCCAGGAGCTCGTCCGGGTAGGTGGGGTGGCGGGGCTGGCTTGGCG
GGCAGGAGAGGGTGCTCTGTGGACGGCGAGACACCCGATAGAGGCCGCGA
TGGCCACCGTAGGCATGGCGGCCGACACAGGCAAAGCCGTGTACGAACAG
GCGGTGTGGATGGCCGATCTCCTTGTCACCGTCAGGGAAGAGGTATTCGC
GGGTCCGGTTGATGTTCGCGAAGAGTGATTGAAGTACATACGTAAACATT
TTGACGTGCGAGTTGTAGTGCTTGCGATCAAGCGGGGCCATGTTGGTGGT
GCCGAAATCGGACGAGCCGTGGCCAGTGTTGTGTTGAACCCACTTCAGCA
CGCACGGGCCAGTGTGTGTGGGAACACACTGTCTGACACTTTTTGTATTT
CTCATGCCAATAGGATTGATCACGATTTTGCAGTGCCGCGCGAAGGAAAA
CAGTTGTGCCGGCGTAGACTCGCAGCGACTCGCCGGAGAACGAGGATCGT
ACACATGAGTGATATGTGAAGCTTCGGGTAATATGAAGTCGCCACACATC
ATGTGTCGGCGGCGATACCAACAGGGATCAGGGATTCGAGATTGACGGTA
AGGCCCGGCTGCTCGCGAGTTGTGTCATAATTTGTAGCGCTCGCATTTTC
AGTATTCGCAGCTCAGAGCTAATATAATGTATGCTTACTCATGTAATATG
GTAATGTGGTGTGGGAATATGTTAACGTGTTCTGTGTGGCTGAGAGGTGT
TGTCTCCTTCAAGGCCGCCGATCGTTGCTGTTGGCTGCGAATTATACCGC
AGACTGCGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig148:1230..3590+

>mRNA_H-canaliculatus_F_contig148.3637.1 ID=mRNA_H-canaliculatus_F_contig148.3637.1|Name=mRNA_H-canaliculatus_F_contig148.3637.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1506bp|location=Sequence derived from alignment at H-canaliculatus_F_contig148:1230..3590+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACCCTGATATCTCTTCGAATACTGGTCGGCTACGCGAAGAGCACCCA
CAGAACTCTCGCCCAGCTGTGCCGCGTGCCTTACCAACCTCGACACCGCC
CCGCGACGGCGGCAAGACCAGCACCTCATGTGGACGACGAGGGCACTCAC
CCGGAACAAGACGCTGTTGATAGCGGCAACCGTTTCCTCCTGCGTGTCGA
CGGAGACGAGGATAGCGGAGGTACCCAAAGATGCGGGCTCCCTTGGGATC
CCCTCGCGCCTAGGCTACTACAAGAAGCGCAGCGGTTGGCTAGGGAGGGC
AAGCAGAAACCGTTCACCGCGGCCGTTGTCCTGGCTGCTGCCTTGCCGTT
TTCTGGGTGCGTGGTGCTGGTCGGGGCGCCGGTGTTGGCCGGAGACGCGG
CTCTGCAATGGGGAGCCGGTACTCCTGTCGGAAGGACGGTAGGGCAGGGG
GCCAAGAACGCCGTAGAGATGACCCTGATATCTCTTCGAATACTGGTCGG
CTACGCGAAGAGCACCCACAGAACTCTCGCCCAGCTGTGCCGCGTGCCTT
ACCAACCTCGACACCGCCCCGCGACGGCGGCAAGACCAGCACCTCATGTG
GACGACGAGGGCACTCACCCGGAACAAGACGCTGTTGATAGCGGCAACCG
TTTCCTCCTGCGTGTCGACGGAGACGAGGATAGCGGAGGTACCCAAAGAT
GCGGGCTCCCTTGGGATCCCCTCGCGCCTAGGCTACTACAAGAAGCGCAG
CGGTTGGCTAGGGAGGGCAAGCAGAAACCGTTCACCGCGGCCGTTGTCCT
GGCTGCTGCCTTGCCGTTTTCTGGGTGCGTGGTGCTGGTCGGGGCGCCGG
TGTTGGCCGGAGACGCGGCTCTGCAATGGGGAGCCGGTACTCCTGTCGGA
AGGACGGTAGGGCAGGGGGCCAAGAACGCCGTAGAGCTCAGCAAGCTGGG
CTGGGTAGCGAGCAAGCTCGCCACGAAGCAGACCCTGAGACTTGCGAGCC
AGGAGCTCGTCCGGGTAGGTGGGGTGGCGGGGCTGGCTTGGCGGGCAGGA
GAGGGTGCTCTGTGGACGGCGAGACACCCGATAGAGGCCGCGATGGCCAC
CGTAGGCATGGCGGCCGACACAGGCAAAGCCGTGTACGAACAGGCGGTGT
GGATGGCCGATCTCCTTGTCACCGTCAGGGAAGAGGTATTCGCGGGTCCG
GTTGATGTTCGCGAAGAGTGACTCAGCAAGCTGGGCTGGGTAGCGAGCAA
GCTCGCCACGAAGCAGACCCTGAGACTTGCGAGCCAGGAGCTCGTCCGGG
TAGGTGGGGTGGCGGGGCTGGCTTGGCGGGCAGGAGAGGGTGCTCTGTGG
ACGGCGAGACACCCGATAGAGGCCGCGATGGCCACCGTAGGCATGGCGGC
CGACACAGGCAAAGCCGTGTACGAACAGGCGGTGTGGATGGCCGATCTCC
TTGTCACCGTCAGGGAAGAGGTATTCGCGGGTCCGGTTGATGTTCGCGAA
GAGTGA
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