mRNA_H-canaliculatus_F_contig1479.3635.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1479.3635.1
Unique NamemRNA_H-canaliculatus_F_contig1479.3635.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1479.3635.1 vs. uniprot
Match: A0A6H5JNQ0_9PHAE (KIX_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ0_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.780e-31
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 3 
Query:  570 MTSNGSELFLDRTTRVRKIQQIAAFLAQIEGKDPQDRSLHGLAQKFENQIFTAAMNVEDYNTRINKKLSKVQ 785
            M +NGSELFLDR TRVRKIQQIA FLAQIEGKDPQDRSLHGLAQKFENQIFTAAMNVEDYNTRINKKLSKV+
Sbjct:    1 MAANGSELFLDRNTRVRKIQQIATFLAQIEGKDPQDRSLHGLAQKFENQIFTAAMNVEDYNTRINKKLSKVR 72
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BLAST of mRNA_H-canaliculatus_F_contig1479.3635.1 vs. uniprot
Match: A0A836CHY1_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHY1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.920e-9
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  627 QQIAAFLAQIEGKDPQDRSLHGLAQKFENQIFTAAMNVEDYNTRINKKLSKVQK 788
            +QIA FLA +EGKD  D SLH LA +FENQIF+ A++ +DY  RINKKLS+V+K
Sbjct:   20 RQIAEFLANLEGKDKNDASLHELAGRFENQIFSVAVDFKDYQERINKKLSRVRK 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1479.3635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNQ0_9PHAE3.780e-3193.06KIX_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CHY1_9STRA1.920e-962.96KIX_2 domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1479contigH-canaliculatus_F_contig1479:2848..5954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size791
Cds size573
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1479.3635.1prot_H-canaliculatus_F_contig1479.3635.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1479 4254..5954 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929221.8444273-UTR-H-canaliculatus_F_contig1479:2847..29631622929221.8444273-UTR-H-canaliculatus_F_contig1479:2847..2963Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1479 2848..2963 -
1696845723.7618053-UTR-H-canaliculatus_F_contig1479:2847..29631696845723.7618053-UTR-H-canaliculatus_F_contig1479:2847..2963Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1479 2848..2963 -
1622929221.8617942-UTR-H-canaliculatus_F_contig1479:4152..42531622929221.8617942-UTR-H-canaliculatus_F_contig1479:4152..4253Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1479 4153..4253 -
1696845723.7729151-UTR-H-canaliculatus_F_contig1479:4152..42531696845723.7729151-UTR-H-canaliculatus_F_contig1479:4152..4253Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1479 4153..4253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929221.8740277-CDS-H-canaliculatus_F_contig1479:4253..44001622929221.8740277-CDS-H-canaliculatus_F_contig1479:4253..4400Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1479 4254..4400 -
1696845723.7819636-CDS-H-canaliculatus_F_contig1479:4253..44001696845723.7819636-CDS-H-canaliculatus_F_contig1479:4253..4400Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1479 4254..4400 -
1622929221.8853347-CDS-H-canaliculatus_F_contig1479:5528..59541622929221.8853347-CDS-H-canaliculatus_F_contig1479:5528..5954Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1479 5529..5954 -
1696845723.7942455-CDS-H-canaliculatus_F_contig1479:5528..59541696845723.7942455-CDS-H-canaliculatus_F_contig1479:5528..5954Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1479 5529..5954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1479.3635.1

>prot_H-canaliculatus_F_contig1479.3635.1 ID=prot_H-canaliculatus_F_contig1479.3635.1|Name=mRNA_H-canaliculatus_F_contig1479.3635.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=191bp
GGKALVRAPIGGNLGYANEAIGKPLNRAPKLRRVKPVEEFFGSSTLSRAA
FSHRERGRDSRALREGAADGRGACHLRRRAVVSHPALEVAAERRRAGSVA
RASDVWREETPTRRGQLTKKRGTLSNGVFIEKELARRAGRGKANARFRKA
GGQRCLTLLEGIVPLVVFVRGRRHSSSKTKKAREKSQKPS*
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mRNA from alignment at H-canaliculatus_F_contig1479:2848..5954-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1479.3635.1 ID=mRNA_H-canaliculatus_F_contig1479.3635.1|Name=mRNA_H-canaliculatus_F_contig1479.3635.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3107bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1479:2848..5954- (Hapterophycus canaliculatus Oshoro5f female)
GGAGGGAAGGCGCTGGTGCGTGCACCGATCGGAGGAAACTTGGGCTACGC
GAACGAGGCAATCGGCAAGCCTTTAAACCGTGCGCCGAAGCTACGAAGGG
TGAAACCGGTTGAAGAGTTTTTCGGGTCTTCGACACTTTCGCGAGCGGCT
TTCTCTCACCGCGAGAGGGGGAGAGATTCGCGAGCTCTCCGCGAAGGAGC
AGCTGACGGGCGGGGAGCCTGCCACCTAAGGCGACGGGCGGTAGTATCGC
ATCCTGCTCTAGAAGTGGCAGCCGAACGGAGAAGGGCTGGTTCTGTGGCG
CGCGCATCCGACGTGTGGAGAGAGGAGACACCGACGAGGAGGGGGCAGTT
GACCAAAAAGCGGGGTACCCTTTCGAACGGAGTTTTCATCGAGAAGGAGC
TTGCTCGCCGGGCAGGACGCGGAAAGGTGAGAGATAAGACGGTGGTCGAC
ACCGGTGCTCCTGCCACCGTTTGTGCGACGTCGGGGGCGAGCTCGGCAGG
GCCTCAGAGGATGATGTAGGAGTTGGGGTGCTGCGAAGGAGCCACGTGCA
ATGTCGGCGTTGTTTGGGAAGTAGATGAGATTTCCAGCAGCAGAGAGGGC
AGATGCTCTGTCTTTTCGTTCCAGCGCGCACACGCACCGGCGGCCCGCGC
GGTTAGAGGTGATCCGTCCTGCGCCGATGTCGACTCTTGCATGAGCTCGC
GTCTTTTTCGGACGTGGCGTGATGGGCGCGGTGAATTCAGCCGGACATGC
TCTCCATTTCCGTCTCCACCCGATTATACTCTGTTTCTCTCTCCTCTCAT
GCTTTCTTAGTTCGCTCCGAAAAAGAGAAAATGGGCCTGCTGTCTGTGTT
GGCGCGCTGTGCTATGCTGGTTTTTTGCGGAGTCTTTTTCCCCATGTTCC
CACGAGGCACCCAGCCCGCCCCATGCCGCAGGGCACCCCTCGCTGACATC
GCGGGACAGAGGGAGGTTTCGTATCACGGTTGTCGAACCCCGCAGTCGGC
GGCTCGTGGTTGTTTTTTGCGGAGGCGAAATCGTCGATGATGGAACCCCT
ACTACGTCAGGCGTTTGGTTGTTGATCTGTCTTTCTGCGTGTGGCCAAAA
AAATCGAGTTCCCCCCGCGATTTTCATCCTGTCGACGTGTAACTAGCGCG
TTCTCTCGCTCTCACTCACTCGCTCGCTCCCGGGACCTTGCACCAAGGGC
GTGCGGCGGTGCTCGCCCCGGTGGACCCTGCCACTAAATATGGCACAGAC
CGTACATCGTGTCTACCGGCGTACCGGAGATAGAGCGCGAGTCATGAGGA
TGGAACGTCGTTGGTGTGACAACGAACTCACATACAATCACACCTTTTTT
TTTGTTCACACCCCGTGTCCCCTCCCTTTTTTCTTTCGCCCCCTCTTCCG
GCTCGAAAAACGAAGTCACTCCTCGATTTTCCAAACCAAAGCCTGATACC
ATGTTTTTTTGTCCCCCCTGGCCCGTTCTCGCTCCCGCGTGTCGCGGCCC
TTCCCTTGCTCACCCCCCCCTGGCGCCGCGGCTCGCTCAACACTTCTCTG
ATAGGCGAACGCCCGCTTCCGCAAGGCGGGGGGGCAGCGCTGTCTCACTC
TACTGGAGGGAATCGTCCCTTTGGTGGTGTTCGTGAGAGGGAGGAGACAC
TCCTCGTCAAAGACGAAAAAAGCTCGCGAGAAAAGTCAAAAACCATCATG
ACGTCGAACGGAAGTGAGTTGTTCCTCGACAGGACCACTCGGGTGCGCAA
GATTCAGCAGATCGCGGCGTTCCTGGCTCAGATAGAAGGGAAGGACCCCC
AGGTAAGAGGAGGACAAGGAGGGAGTATCTATCGCCGTGCGGGCTCCGTT
GTCATTTCTGTTTTTTTGGCCAAGAGGTCTCTCTTTCCGTTTATGGGTCG
ACTGGAGATTTTCGGGGGATTGTTGCCCTTGCGTTTGGTGTTTCTATTTT
GCATCACACGCCCGCCGCCGGGAGAAGCCCGTGCGCCGGAGTGTCAACGT
TACCAGGGGTACAAGGCGACGTACGGCTCCCCGCCACCACTTCAGTCTTA
TCCTCTCCTCACGTGCTAGCGGGATGCGTTCTTTCTTCGCGTCGCCCGAT
GCGCAAGCTCGGGGCCCACGAGAAACAAATCAAATTCGTGTGGGCGGCGT
GATGTTTTTTCACACTCCTCCATCCAGAGCTCTCTCGCCCTCCTCTCGTC
TTCTCTTTTTCCCGCTAGGGCGTGGGCCCCGTTTCTCTCCTCCCGTCCTA
CAAATAATATTGGCGTGTCTGTCATGAGAGTGCCCTGTCTCCCGGCGCGT
CGTGGACGTCCCTCCTGCAGTAGTATGCAGCGGGACCTGGTGTTCATGCG
GCGAAAGTCGTGCGCCGTTCCAAATGCGCTGTTGCACTCTGTGATGTAGA
GATTACTTCGCCAGAGCAGCACTGGGGAGCTCGGGCGATCGACTCAAGGT
CGATTCTGTCTGCGGTTAAAAATATTGGTCGTCTTTTTATTTTTTTCCGA
GCGTTTTTTTAGATTTGTTTTCTTCTGCGTATGAAAGCGAAGACATTTTT
TATGTTCATGATACGTGTACTCTGTATAAACAAAAACTCTTTCAAGTTCA
GTGAGTCCCACCATTTGTGTGACGCTCGATGTCTCCCATCCGTTCCCCCC
CGGCGGCCCCTCTTTAGTTTGTCCGAAACACGAGTCGTTCATTCCGCCGG
TGTCGCGCGTCCTCTCACTGTAGTCATAGTTCGCGCGTGTGCACGCTTTC
CCCTGGGACGAAGGGGCTGCCCACCGCAGCACTGAGGTGCCGAGCAGGAG
CTGAAGCCGCCGTCTTCCGACGCACCGCTTGTTGACGAAACTTTCGCAGG
GGTCAGACTTTTCGTCCTTGTCCATCCCCCGAGTCTTCGAAGTCTTGTCA
AACCGCCAGTCCCTTGAAGCCAACTCTCAAGCGCGTGCGCATCTCTCTCC
CCCTCTTTCTCTCTCTCGTGCTTTTTCCCGGGCGGCCCCAGGACCGGAGC
CTGCATGGCCTAGCCCAAAAGTTCGAGAATCAGATTTTCACGGCGGCGAT
GAACGTGGAGGACTACAACACCCGGATCAACAAGAAGCTCAGCAAGGTTC
AGAAGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1479:2848..5954-

>mRNA_H-canaliculatus_F_contig1479.3635.1 ID=mRNA_H-canaliculatus_F_contig1479.3635.1|Name=mRNA_H-canaliculatus_F_contig1479.3635.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1146bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1479:2848..5954- (Hapterophycus canaliculatus Oshoro5f female)
GGAGGGAAGGCGCTGGTGCGTGCACCGATCGGAGGAAACTTGGGCTACGC
GAACGAGGCAATCGGCAAGCCTTTAAACCGTGCGCCGAAGCTACGAAGGG
TGAAACCGGTTGAAGAGTTTTTCGGGTCTTCGACACTTTCGCGAGCGGCT
TTCTCTCACCGCGAGAGGGGGAGAGATTCGCGAGCTCTCCGCGAAGGAGC
AGCTGACGGGCGGGGAGCCTGCCACCTAAGGCGACGGGCGGTAGTATCGC
ATCCTGCTCTAGAAGTGGCAGCCGAACGGAGAAGGGCTGGTTCTGTGGCG
CGCGCATCCGACGTGTGGAGAGAGGAGACACCGACGAGGAGGGGGCAGTT
GACCAAAAAGCGGGGTACCCTTTCGAACGGAGTTTTCATCGAGAAGGAGC
TTGCTCGCCGGGCAGGACGCGGAAAGGGAGGGAAGGCGCTGGTGCGTGCA
CCGATCGGAGGAAACTTGGGCTACGCGAACGAGGCAATCGGCAAGCCTTT
AAACCGTGCGCCGAAGCTACGAAGGGTGAAACCGGTTGAAGAGTTTTTCG
GGTCTTCGACACTTTCGCGAGCGGCTTTCTCTCACCGCGAGAGGGGGAGA
GATTCGCGAGCTCTCCGCGAAGGAGCAGCTGACGGGCGGGGAGCCTGCCA
CCTAAGGCGACGGGCGGTAGTATCGCATCCTGCTCTAGAAGTGGCAGCCG
AACGGAGAAGGGCTGGTTCTGTGGCGCGCGCATCCGACGTGTGGAGAGAG
GAGACACCGACGAGGAGGGGGCAGTTGACCAAAAAGCGGGGTACCCTTTC
GAACGGAGTTTTCATCGAGAAGGAGCTTGCTCGCCGGGCAGGACGCGGAA
AGGCGAACGCCCGCTTCCGCAAGGCGGGGGGGCAGCGCTGTCTCACTCTA
CTGGAGGGAATCGTCCCTTTGGTGGTGTTCGTGAGAGGGAGGAGACACTC
CTCGTCAAAGACGAAAAAAGCTCGCGAGAAAAGTCAAAAACCATCATGAG
CGAACGCCCGCTTCCGCAAGGCGGGGGGGCAGCGCTGTCTCACTCTACTG
GAGGGAATCGTCCCTTTGGTGGTGTTCGTGAGAGGGAGGAGACACTCCTC
GTCAAAGACGAAAAAAGCTCGCGAGAAAAGTCAAAAACCATCATGA
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