mRNA_H-canaliculatus_F_contig14775.3628.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14775.3628.1
Unique NamemRNA_H-canaliculatus_F_contig14775.3628.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14775.3628.1 vs. uniprot
Match: A0A6H5LN99_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN99_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.310e-7
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 IYLSEWSGAVLGANMMFHRSIIFDLGTQRLGFADANC 111
            IYL+E +GAVLGAN+M  R+++FDL  +R+GFADA C
Sbjct:  482 IYLTESTGAVLGANVMLDRNVLFDLANERIGFADARC 518
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BLAST of mRNA_H-canaliculatus_F_contig14775.3628.1 vs. uniprot
Match: A0A484E2L8_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E2L8_BRELC)

HSP 1 Score: 53.9 bits (128), Expect = 2.450e-7
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 IYLSEWSGAVLGANMMFHRSIIFDLGTQRLGFADANC 111
            IYL+E  G V+GAN+M HR +IFD+G  R+GF DA+C
Sbjct:  397 IYLTENHGGVIGANIMMHRDVIFDVGNHRVGFVDADC 433
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BLAST of mRNA_H-canaliculatus_F_contig14775.3628.1 vs. uniprot
Match: K3WTX9_GLOUD (Peptidase A1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTX9_GLOUD)

HSP 1 Score: 47.8 bits (112), Expect = 3.710e-5
Identity = 19/37 (51.35%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 IYLSEWSGAVLGANMMFHRSIIFDLGTQRLGFADANC 111
            ++L+E+SG V+GAN+M  R +IFD   +R+GF DA+C
Sbjct:   22 VFLTEFSGGVIGANIMTDRDVIFDSENKRVGFVDADC 58
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BLAST of mRNA_H-canaliculatus_F_contig14775.3628.1 vs. uniprot
Match: A0A5D6XLK2_9STRA (Peptidase A1 domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLK2_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.720e-5
Identity = 19/37 (51.35%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 IYLSEWSGAVLGANMMFHRSIIFDLGTQRLGFADANC 111
            ++L+E+SG V+GAN+M  R +IFD   +R+GF DA+C
Sbjct:  333 VFLTEFSGGVIGANIMQDRDVIFDSDNRRVGFVDADC 369
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14775.3628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5LN99_9PHAE1.310e-762.16Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
A0A484E2L8_BRELC2.450e-759.46Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
K3WTX9_GLOUD3.710e-551.35Peptidase A1 domain-containing protein n=1 Tax=Glo... [more]
A0A5D6XLK2_9STRA3.720e-551.35Peptidase A1 domain-containing protein (Fragment) ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14775contigH-canaliculatus_F_contig14775:2278..2388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929221.2989013-CDS-H-canaliculatus_F_contig14775:2277..23881622929221.2989013-CDS-H-canaliculatus_F_contig14775:2277..2388Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14775 2278..2388 -
1696845723.450131-CDS-H-canaliculatus_F_contig14775:2277..23881696845723.450131-CDS-H-canaliculatus_F_contig14775:2277..2388Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14775 2278..2388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14775.3628.1prot_H-canaliculatus_F_contig14775.3628.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14775 2278..2388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14775.3628.1

>prot_H-canaliculatus_F_contig14775.3628.1 ID=prot_H-canaliculatus_F_contig14775.3628.1|Name=mRNA_H-canaliculatus_F_contig14775.3628.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=37bp
IYLSEWSGAVLGANMMFHRSIIFDLGTQRLGFADANC
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mRNA from alignment at H-canaliculatus_F_contig14775:2278..2388-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14775.3628.1 ID=mRNA_H-canaliculatus_F_contig14775.3628.1|Name=mRNA_H-canaliculatus_F_contig14775.3628.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=111bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14775:2278..2388- (Hapterophycus canaliculatus Oshoro5f female)
ATTTACCTGTCGGAGTGGTCGGGGGCCGTCTTAGGCGCCAACATGATGTT
CCACCGTAGCATCATCTTCGACCTCGGCACACAGCGGCTCGGCTTCGCCG
ATGCGAACTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14775:2278..2388-

>mRNA_H-canaliculatus_F_contig14775.3628.1 ID=mRNA_H-canaliculatus_F_contig14775.3628.1|Name=mRNA_H-canaliculatus_F_contig14775.3628.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=222bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14775:2278..2388- (Hapterophycus canaliculatus Oshoro5f female)
ATTTACCTGTCGGAGTGGTCGGGGGCCGTCTTAGGCGCCAACATGATGTT
CCACCGTAGCATCATCTTCGACCTCGGCACACAGCGGCTCGGCTTCGCCG
ATGCGAACTGCATTTACCTGTCGGAGTGGTCGGGGGCCGTCTTAGGCGCC
AACATGATGTTCCACCGTAGCATCATCTTCGACCTCGGCACACAGCGGCT
CGGCTTCGCCGATGCGAACTGC
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