mRNA_H-canaliculatus_F_contig14718.3602.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14718.3602.1
Unique NamemRNA_H-canaliculatus_F_contig14718.3602.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14718.3602.1 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 5.980e-15
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 RKKARAVCVTGTPALSRPAELFMQLKALMPGAFKAFHPFAVR 126
            +K +RA+CVTGTPALSRPAELFMQLKALMP AF+ FHPFAVR
Sbjct:  254 QKASRAICVTGTPALSRPAELFMQLKALMPQAFRTFHPFAVR 295
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BLAST of mRNA_H-canaliculatus_F_contig14718.3602.1 vs. uniprot
Match: A0A0B1RVA9_OESDE (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1RVA9_OESDE)

HSP 1 Score: 55.5 bits (132), Expect = 9.620e-8
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 RKKARAVCVTGTPALSRPAELFMQLKALMPGAFKAFHPFAVR-----QARFCLRA 150
            +K +R + ++GTPALSRPAELF Q+K +    F +FH FA+R     Q RFC  A
Sbjct:   45 KKASRVILLSGTPALSRPAELFSQIKLVNERLFPSFHQFAIRYCDGKQGRFCFEA 99
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BLAST of mRNA_H-canaliculatus_F_contig14718.3602.1 vs. uniprot
Match: A0A7S4KWJ5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KWJ5_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 2.240e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 RKKARAVCVTGTPALSRPAELFMQLKALMPGAFKAFHPFAVRQARFC 141
            +K  RA+ +TGTPALSRP ELF Q++A+ P  F  F PFA   +R+C
Sbjct:   33 QKAKRAILLTGTPALSRPKELFTQIQAINPNLFPKFFPFA---SRYC 76
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BLAST of mRNA_H-canaliculatus_F_contig14718.3602.1 vs. uniprot
Match: A0A3P7HAX6_ANGCS (Uncharacterized protein n=2 Tax=Angiostrongylus costaricensis TaxID=334426 RepID=A0A3P7HAX6_ANGCS)

HSP 1 Score: 54.7 bits (130), Expect = 2.380e-7
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 RKKARAVCVTGTPALSRPAELFMQLKALMPGAFKAFHPFAVR-----QARFCLRA 150
            ++ +R + ++GTPALSRPAELF Q+K +    F  FH FAVR     Q RFC  A
Sbjct:  225 KRASRVILLSGTPALSRPAELFSQIKLVNDSLFPKFHEFAVRYCDGKQGRFCFEA 279
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BLAST of mRNA_H-canaliculatus_F_contig14718.3602.1 vs. uniprot
Match: A0A0K0CWU2_ANGCA (Uncharacterized protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0CWU2_ANGCA)

HSP 1 Score: 54.7 bits (130), Expect = 2.380e-7
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 RKKARAVCVTGTPALSRPAELFMQLKALMPGAFKAFHPFAVR-----QARFCLRA 150
            ++ +R + ++GTPALSRPAELF Q+K +    F  FH FAVR     Q RFC  A
Sbjct:  248 KRASRVILLSGTPALSRPAELFSQIKLVNDSLFPKFHEFAVRYCDGKQGRFCFEA 302
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BLAST of mRNA_H-canaliculatus_F_contig14718.3602.1 vs. uniprot
Match: A0A3P6QTX9_CYLGO (Uncharacterized protein n=1 Tax=Cylicostephanus goldi TaxID=71465 RepID=A0A3P6QTX9_CYLGO)

HSP 1 Score: 54.3 bits (129), Expect = 3.240e-7
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 RKKARAVCVTGTPALSRPAELFMQLKALMPGAFKAFHPFAVR-----QARFCLRA 150
            RK +R + ++GTPALSRPAELF Q++ +    F  FH FA+R     Q RFC  A
Sbjct:  101 RKASRVILLSGTPALSRPAELFSQIRLVNERLFPNFHQFAIRYCDGKQGRFCFEA 155
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BLAST of mRNA_H-canaliculatus_F_contig14718.3602.1 vs. uniprot
Match: A0A401PAN0_SCYTO (Uncharacterized protein n=4 Tax=Scyliorhinus TaxID=7829 RepID=A0A401PAN0_SCYTO)

HSP 1 Score: 53.9 bits (128), Expect = 4.470e-7
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 RKKARAVCVTGTPALSRPAELFMQLKALMPGAFKAFHPFAVRQARFCLR 147
            +K ARAV +TGTPALSRP ELFMQ+ AL PG F  +  +A R     LR
Sbjct:  132 QKAARAVLLTGTPALSRPEELFMQINALYPGKFGTWTVYAKRYCNAHLR 180
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BLAST of mRNA_H-canaliculatus_F_contig14718.3602.1 vs. uniprot
Match: C1N727_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N727_MICPC)

HSP 1 Score: 53.1 bits (126), Expect = 8.320e-7
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   13 RAVCVTGTPALSRPAELFMQLKALMPGAFKAFHPFAVR 126
            RA+C+TGTPALSRP EL+ QL+AL P  F  F+ FA R
Sbjct:  242 RAICLTGTPALSRPIELYTQLEALRPNVFTKFNEFAQR 279
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BLAST of mRNA_H-canaliculatus_F_contig14718.3602.1 vs. uniprot
Match: A0A7R9Y2M5_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y2M5_MICPS)

HSP 1 Score: 53.1 bits (126), Expect = 8.330e-7
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   13 RAVCVTGTPALSRPAELFMQLKALMPGAFKAFHPFAVR 126
            RA+C+TGTPALSRP EL+ QL+AL P  F  F+ FA R
Sbjct:  180 RAICLTGTPALSRPIELYTQLEALRPNVFTKFNEFAQR 217
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BLAST of mRNA_H-canaliculatus_F_contig14718.3602.1 vs. uniprot
Match: A0A0C2CN89_9BILA (Helicase protein n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2CN89_9BILA)

HSP 1 Score: 52.4 bits (124), Expect = 1.540e-6
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 RKKARAVCVTGTPALSRPAELFMQLKALMPGAFKAFHPFAVR-----QARFCLRA 150
            +K +R + ++GTPALSRPAELF Q++ +    F  FH FA+R     Q RFC  A
Sbjct:   18 KKASRVILLSGTPALSRPAELFSQIRLVNDRLFPNFHEFALRYCDGKQGRFCFEA 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14718.3602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK86_ECTSI5.980e-1583.33Harp (Smarcal1)-related n=1 Tax=Ectocarpus silicul... [more]
A0A0B1RVA9_OESDE9.620e-849.09Helicase ATP-binding domain-containing protein (Fr... [more]
A0A7S4KWJ5_9EUKA2.240e-753.19Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A3P7HAX6_ANGCS2.380e-749.09Uncharacterized protein n=2 Tax=Angiostrongylus co... [more]
A0A0K0CWU2_ANGCA2.380e-749.09Uncharacterized protein n=1 Tax=Angiostrongylus ca... [more]
A0A3P6QTX9_CYLGO3.240e-749.09Uncharacterized protein n=1 Tax=Cylicostephanus go... [more]
A0A401PAN0_SCYTO4.470e-757.14Uncharacterized protein n=4 Tax=Scyliorhinus TaxID... [more]
C1N727_MICPC8.320e-763.16Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A7R9Y2M5_MICPS8.330e-763.16Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A0C2CN89_9BILA1.540e-647.27Helicase protein n=1 Tax=Ancylostoma duodenale Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14718contigH-canaliculatus_F_contig14718:21..170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue4.7e-12
Seed eggNOG ortholog2880.D8LK86
KEGG koko:K14440
EggNOG free text desc.annealing helicase activity
EggNOG OGsCOG0553@1,KOG1000@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929217.9538145-CDS-H-canaliculatus_F_contig14718:20..1701622929217.9538145-CDS-H-canaliculatus_F_contig14718:20..170Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14718 21..170 -
1696845722.0776567-CDS-H-canaliculatus_F_contig14718:20..1701696845722.0776567-CDS-H-canaliculatus_F_contig14718:20..170Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14718 21..170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14718.3602.1prot_H-canaliculatus_F_contig14718.3602.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14718 21..170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14718.3602.1

>prot_H-canaliculatus_F_contig14718.3602.1 ID=prot_H-canaliculatus_F_contig14718.3602.1|Name=mRNA_H-canaliculatus_F_contig14718.3602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=50bp
RKKARAVCVTGTPALSRPAELFMQLKALMPGAFKAFHPFAVRQARFCLRA
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mRNA from alignment at H-canaliculatus_F_contig14718:21..170-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14718.3602.1 ID=mRNA_H-canaliculatus_F_contig14718.3602.1|Name=mRNA_H-canaliculatus_F_contig14718.3602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=150bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14718:21..170- (Hapterophycus canaliculatus Oshoro5f female)
CGAAAAAAAGCGCGGGCCGTGTGCGTCACGGGGACCCCGGCGCTGTCCAG
GCCGGCGGAGCTGTTCATGCAGCTGAAGGCGCTCATGCCCGGCGCGTTCA
AAGCCTTCCACCCCTTCGCGGTCAGGCAAGCCCGTTTTTGTTTGCGCGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14718:21..170-

>mRNA_H-canaliculatus_F_contig14718.3602.1 ID=mRNA_H-canaliculatus_F_contig14718.3602.1|Name=mRNA_H-canaliculatus_F_contig14718.3602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=300bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14718:21..170- (Hapterophycus canaliculatus Oshoro5f female)
CGAAAAAAAGCGCGGGCCGTGTGCGTCACGGGGACCCCGGCGCTGTCCAG
GCCGGCGGAGCTGTTCATGCAGCTGAAGGCGCTCATGCCCGGCGCGTTCA
AAGCCTTCCACCCCTTCGCGGTCAGGCAAGCCCGTTTTTGTTTGCGCGCT
CGAAAAAAAGCGCGGGCCGTGTGCGTCACGGGGACCCCGGCGCTGTCCAG
GCCGGCGGAGCTGTTCATGCAGCTGAAGGCGCTCATGCCCGGCGCGTTCA
AAGCCTTCCACCCCTTCGCGGTCAGGCAAGCCCGTTTTTGTTTGCGCGCT
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