mRNA_H-canaliculatus_F_contig14710.3599.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14710.3599.1
Unique NamemRNA_H-canaliculatus_F_contig14710.3599.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14710.3599.1 vs. uniprot
Match: D8LF87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 2.840e-66
Identity = 99/113 (87.61%), Postives = 109/113 (96.46%), Query Frame = 1
Query:    1 SLAPQGQLRCWVDVMSSDDARFFPPDDVSLPPNLDFEIRVVFWKCKDVVSMDTATDQNDLFVRSWVEGCDAQETDTHWFAKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQV 339
            SLAPQGQLRCW+D+MS++DAR FPPDDVSLPPN DFE+RVVFWKCKDVV+MDT T+QNDLFV+SWVEGCDAQETDTHWFAKKGKGSFNWRMKFKV LGPRT+AWKFPYLTVQ+
Sbjct: 1792 SLAPQGQLRCWLDIMSAEDARAFPPDDVSLPPNRDFEVRVVFWKCKDVVAMDTVTEQNDLFVKSWVEGCDAQETDTHWFAKKGKGSFNWRMKFKVSLGPRTRAWKFPYLTVQL 1904          
BLAST of mRNA_H-canaliculatus_F_contig14710.3599.1 vs. uniprot
Match: D8LF91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF91_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.250e-48
Identity = 77/113 (68.14%), Postives = 95/113 (84.07%), Query Frame = 1
Query:    1 SLAPQGQLRCWVDVMSSDDARFFPPDDVSLPPNLDFEIRVVFWKCKDVVSMDTATDQNDLFVRSWVEGCDAQETDTHWFAKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQV 339
            S APQG L+CWVD+M   DA+ FPP DV+LPP+++FE+R+V WKCKDVV+MD A+  NDLFV+SW+EGCD  ETDTHW AK GKGSFNWRMKF+V LGPR ++ KFPYLT+Q+
Sbjct: 1351 SNAPQGMLQCWVDIMPPGDAKGFPPADVALPPDVEFEVRLVIWKCKDVVAMDFASGLNDLFVKSWLEGCDPLETDTHWRAKGGKGSFNWRMKFRVILGPRARSSKFPYLTLQM 1463          
BLAST of mRNA_H-canaliculatus_F_contig14710.3599.1 vs. uniprot
Match: A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.110e-47
Identity = 76/112 (67.86%), Postives = 93/112 (83.04%), Query Frame = 1
Query:    1 SLAPQGQLRCWVDVMSSDDARFFPPDDVSLPPNLDFEIRVVFWKCKDVVSMDTATDQNDLFVRSWVEGCDAQETDTHWFAKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQ 336
            S APQG L+CWVD+M   DA+ FPP DV+LPP+++FE+R+  WKCKDVV+MD A+  NDLFV+SW+EGCD  ETDTHW AK GKGSFNWRMKF+V LGPR ++ KFPYLT+Q
Sbjct: 1733 SNAPQGMLQCWVDIMPPGDAKGFPPADVALPPDVEFEVRLGIWKCKDVVAMDFASGLNDLFVKSWLEGCDPLETDTHWRAKGGKGSFNWRMKFRVMLGPRARSSKFPYLTLQ 1844          
BLAST of mRNA_H-canaliculatus_F_contig14710.3599.1 vs. uniprot
Match: A0A7S3XXD1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXD1_HETAK)

HSP 1 Score: 150 bits (378), Expect = 3.810e-41
Identity = 70/113 (61.95%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 SLAPQGQLRCWVDVMSSDDARFFPPDDVSLPPNLDFEIRVVFWKCKDVVSMDTATDQNDLFVRSWVEGCDAQETDTHWFAKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQV 339
            S APQGQL CWVDV+   +A  FP DDV+LP  + FE+RVV WK KD VSM+  T  ND+F + W EG D QETDTHW AK GK SFNWRMKF V LG   +A KFPYL VQ+
Sbjct:  254 STAPQGQLTCWVDVLRPAEAAVFPADDVALPAAMVFEVRVVVWKTKDCVSMEALTHMNDMFAKVWAEGADKQETDTHWRAKGGKASFNWRMKFDVLLGHNARAMKFPYLHVQL 366          
BLAST of mRNA_H-canaliculatus_F_contig14710.3599.1 vs. uniprot
Match: A0A7S1TTJ4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTJ4_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.930e-40
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   10 PQGQLRCWVDVMSSDDARFFPPDDVSLPPNLDFEIRVVFWKCKDVVSMDTATDQN--DLFVRSWVEGCDAQETDTHWFAKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQV 339
            PQG L CWVD+M   +A  FPPDDV+LPP  DFE+RVV WK   V   D    QN  D++ R WVEG ++QETDTHW AK+GKGSFNWRM+F V LGPR KA+KFPYL VQ+
Sbjct:  325 PQGDLECWVDIMPPGEAAAFPPDDVALPPAQDFEVRVVVWKTAKVPPQDLLGGQNMTDMYARVWVEGAESQETDTHWRAKRGKGSFNWRMRFPVRLGPREKAFKFPYLHVQL 436          
BLAST of mRNA_H-canaliculatus_F_contig14710.3599.1 vs. uniprot
Match: A0A7S1U2G6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2G6_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.100e-38
Identity = 67/112 (59.82%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   10 PQGQLRCWVDVMSSDDARFFPPDDVSLPPNLDFEIRVVFWKCKDVVSMDTATDQN--DLFVRSWVEGCDAQETDTHWFAKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQV 339
            PQG L CWVD+M   +A  +PPDDV+LPP  +FE+RVV WK  +V   DT   QN  D+F + WVEGCD QETDTHW AKKGKGSFNWRMKF + LG      KFPYL  Q+
Sbjct:  277 PQGNLECWVDIMQPHEASAYPPDDVALPPRQEFEVRVVVWKLANVPPADTLGGQNMTDMFCKVWVEGCDVQETDTHWRAKKGKGSFNWRMKFDIELGHGAHVSKFPYLHFQL 388          
BLAST of mRNA_H-canaliculatus_F_contig14710.3599.1 vs. uniprot
Match: A0A7S3JSY6_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSY6_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.040e-37
Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 SLAPQGQLRCWVDVMSSDDARFFPPDDVSLPPNLDFEIRVVFWKCKDVVSMDTATDQNDLFVRSWVEGCDAQETDTHWFAKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQ 336
            S   QGQL CWVD+++  +A  FPPDDVSLPP L  E+RVV WK +D+V+MDT T+ NDL+++  +E  +AQ TD HW AK GKGSFNWRMKF V LG  TK  +FP+L +Q
Sbjct: 1596 SAQEQGQLECWVDILTPAEASTFPPDDVSLPPKLKAEVRVVVWKARDMVNMDTITNMNDLYIKCQMEDTEAQCTDIHWRAKGGKGSFNWRMKFDVELGHNTKVMRFPHLKIQ 1707          
BLAST of mRNA_H-canaliculatus_F_contig14710.3599.1 vs. uniprot
Match: A0A3M6VD74_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VD74_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.310e-36
Identity = 63/112 (56.25%), Postives = 77/112 (68.75%), Query Frame = 1
Query:    1 SLAPQGQLRCWVDVMSSDDARFFPPDDVSLPPNLDFEIRVVFWKCKDVVSMDTATDQNDLFVRSWVEGCDAQETDTHWFAKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQ 336
            S AP G ++ W+D++S   A  +PP D+SLPP +D E+RVV WK ++V S DT  D NDLF R W+EG D QETD HW AKKGKGSFNWRMKF + LG +    K PY  VQ
Sbjct: 1459 SRAPMGTIKLWIDILSPAQAHDYPPIDISLPPPVDMELRVVVWKARNVPSFDTMEDMNDLFFRCWMEGSDYQETDIHWRAKKGKGSFNWRMKFPITLGHKQTNTKIPYFHVQ 1570          
BLAST of mRNA_H-canaliculatus_F_contig14710.3599.1 vs. uniprot
Match: M4BQ73_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQ73_HYAAE)

HSP 1 Score: 139 bits (351), Expect = 4.300e-36
Identity = 62/112 (55.36%), Postives = 77/112 (68.75%), Query Frame = 1
Query:    1 SLAPQGQLRCWVDVMSSDDARFFPPDDVSLPPNLDFEIRVVFWKCKDVVSMDTATDQNDLFVRSWVEGCDAQETDTHWFAKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQ 336
            S AP G ++ W+D++S   A  +PP D+SLPP +D E+RVV WK ++V S DT  D NDLF R W+EG D QETD HW AKKGKGSFNWRMKF + LG +    K PY  +Q
Sbjct: 1459 SQAPMGTIKLWIDILSPAQAHDYPPIDISLPPPVDMELRVVVWKARNVPSFDTLEDMNDLFFRCWMEGSDYQETDIHWRAKKGKGSFNWRMKFLITLGHKQTNTKIPYFHIQ 1570          
BLAST of mRNA_H-canaliculatus_F_contig14710.3599.1 vs. uniprot
Match: A0A6G0WJX2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJX2_9STRA)

HSP 1 Score: 139 bits (350), Expect = 5.870e-36
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 SLAPQGQLRCWVDVMSSDDARFFPPDDVSLPPNLDFEIRVVFWKCKDVVSMDTATDQNDLFVRSWVEGCDAQETDTHWFAKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQV 339
            S AP GQL+ W+D+++  DA  +PP D++LPP + FE+RVV WK K+V + D  T+ NDLFVR  +EG D+Q+TD HW AKKGK SFNWRMKF V LG +    KFPY  +Q+
Sbjct: 1492 SRAPMGQLKLWIDILTPKDAAAYPPVDIALPPPITFELRVVIWKTKEVPNFDELTEMNDLFVRCQLEGSDSQDTDIHWRAKKGKASFNWRMKFPVTLGHKQHNSKFPYFKMQM 1604          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14710.3599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF87_ECTSI2.840e-6687.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LF91_ECTSI1.250e-4868.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL55_9PHAE1.110e-4767.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XXD1_HETAK3.810e-4161.95Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1TTJ4_9STRA1.930e-4062.50Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U2G6_9STRA1.100e-3859.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3JSY6_9STRA1.040e-3758.04Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A3M6VD74_9STRA2.310e-3656.25Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
M4BQ73_HYAAE4.300e-3655.36Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A6G0WJX2_9STRA5.870e-3654.87Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14710contigH-canaliculatus_F_contig14710:312..1812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.6
Seed ortholog evalue2.8e-57
Seed eggNOG ortholog2880.D8LF87
KEGG koko:K19949,ko:K22125,ko:K22127
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1030@1,KOG1030@2759,KOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFerIin domain
Ec32 orthologEc-01_004080.1
Exons3
Model size339
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14710.3599.1prot_H-canaliculatus_F_contig14710.3599.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14710 312..1812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929217.7250366-CDS-H-canaliculatus_F_contig14710:311..4171622929217.7250366-CDS-H-canaliculatus_F_contig14710:311..417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14710 312..417 -
1696845721.9808521-CDS-H-canaliculatus_F_contig14710:311..4171696845721.9808521-CDS-H-canaliculatus_F_contig14710:311..417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14710 312..417 -
1622929217.7481623-CDS-H-canaliculatus_F_contig14710:698..8201622929217.7481623-CDS-H-canaliculatus_F_contig14710:698..820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14710 699..820 -
1696845721.9940557-CDS-H-canaliculatus_F_contig14710:698..8201696845721.9940557-CDS-H-canaliculatus_F_contig14710:698..820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14710 699..820 -
1622929217.762582-CDS-H-canaliculatus_F_contig14710:1701..18121622929217.762582-CDS-H-canaliculatus_F_contig14710:1701..1812Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14710 1702..1812 -
1696845722.0028281-CDS-H-canaliculatus_F_contig14710:1701..18121696845722.0028281-CDS-H-canaliculatus_F_contig14710:1701..1812Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14710 1702..1812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14710.3599.1

>prot_H-canaliculatus_F_contig14710.3599.1 ID=prot_H-canaliculatus_F_contig14710.3599.1|Name=mRNA_H-canaliculatus_F_contig14710.3599.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
SLAPQGQLRCWVDVMSSDDARFFPPDDVSLPPNLDFEIRVVFWKCKDVVS
MDTATDQNDLFVRSWVEGCDAQETDTHWFAKKGKGSFNWRMKFKVPLGPR
TKAWKFPYLTVQV
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mRNA from alignment at H-canaliculatus_F_contig14710:312..1812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14710.3599.1 ID=mRNA_H-canaliculatus_F_contig14710.3599.1|Name=mRNA_H-canaliculatus_F_contig14710.3599.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1501bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14710:312..1812- (Hapterophycus canaliculatus Oshoro5f female)
AGCCTGGCGCCCCAGGGCCAGCTGAGGTGTTGGGTGGACGTGATGTCGTC GGACGACGCCAGGTTCTTCCCGCCGGACGATGTTTCGCTGCCGCCCAACC TCGACTTCGAGGTAAGCCGTCATAACGTGTCGCAACGTGCTATAACGTGG TGATGCTCCTTCCACTGAAGCCAACAACAACGAAATATCTGATGTAGTCC AGCTGTTCACCGGAGGAGACTCAACAGCGAGCAAGAACCGATTGAATGAA GTAGAAGCACGTGGACGCGGTGGTGCGTGCATTCATATCGACCGGAGATT GCCACGCCGCATGGCATATATGCATGTTGACACGTAGTTCGTGCGGGCGT ACAGCAGCAGTGCTCGGCTAGCTGACGCGTTTGCCCTCAGATACCGGGCC GGGTCTCGCGGTGCTGTATCGACCAACAATACCCAAAATAATCCAAATAC TCCGAGGAAGAGGTAGGTAGCAGCTCTACACGATTTCGTTCCCTCACGCA AGCACAACATAACGCTTTTGTTGTCGAGGACTGCCGCAGTCCTTGCCTGC ATGGCCGGGTGAAACGCGTCGCTAAGTAGCAAAGGAAGACGCGGTCGGGC TTGGAATGGATCAATCCGGAGACATGTCGCGCTGCTTGCGGCGGCTGTCG CGCTTCTTTGGGCAGCATCACGAGTCCGATTGACGTATCGTTCGGCCTTG TCCTCGCCCGAAAGATCAGAAACGAATCTCTAACGAAGGCGGCCGGCACC CGGCGGGTTCGGCAGGGTGCCGGCCCTTGACCTTGGTTTTTGCCCTCGTC GGCACGGCGGTGTCGACGGACGCCGCCCCTATCGACGCCTCTCGAAGCCT CGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGGAAGAGGCGGAGATGCCG CAGCAACCCGTCAGCGGTCGGTCGATCCATCCATCCATCCATCCATCAAA CCTGCCCCTCCATATTCTTTCCGCGCTCGCTCGCTGGTGCAGATCCGAGT GGTGTTCTGGAAGTGCAAGGACGTCGTGTCGATGGACACGGCCACGGACC AAAACGACCTCTTCGTACGCAGCTGGGTGGAGGGCTGCGACGCCCAGGAG ACCGACACGCATTGGTGAGGGCGAGCGCGTTCGGGTTGGCGTTTGATCTC GATGCTCGATGTTGATGTCAAAGGAGGCGTTGGTGTCGTCGTTGCTGTTG TTGTCTGTCTATCTGTCTGTCTGTCTGTCTGTCACTGTCTATGTACCGTT ACCTCCCCCCTCCCCCCCCCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTC CATCTTTTCCTCTATCCCTCTCTCGGCGATCGCTGCACGCTTTTCGTCGT GGCGGCGCAATAATCTATTTTTACATTAATCCTGAATCCCTCCAGGTTCG CCAAGAAAGGCAAGGGGTCGTTCAACTGGCGAATGAAGTTCAAGGTGCCC CTCGGCCCACGTACCAAGGCGTGGAAATTTCCATACCTCACCGTGCAGGT A
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14710:312..1812-

>mRNA_H-canaliculatus_F_contig14710.3599.1 ID=mRNA_H-canaliculatus_F_contig14710.3599.1|Name=mRNA_H-canaliculatus_F_contig14710.3599.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14710:312..1812- (Hapterophycus canaliculatus Oshoro5f female)
AGCCTGGCGCCCCAGGGCCAGCTGAGGTGTTGGGTGGACGTGATGTCGTC
GGACGACGCCAGGTTCTTCCCGCCGGACGATGTTTCGCTGCCGCCCAACC
TCGACTTCGAGAGCCTGGCGCCCCAGGGCCAGCTGAGGTGTTGGGTGGAC
GTGATGTCGTCGGACGACGCCAGGTTCTTCCCGCCGGACGATGTTTCGCT
GCCGCCCAACCTCGACTTCGAGATCCGAGTGGTGTTCTGGAAGTGCAAGG
ACGTCGTGTCGATGGACACGGCCACGGACCAAAACGACCTCTTCGTACGC
AGCTGGGTGGAGGGCTGCGACGCCCAGGAGACCGACACGCATTGATCCGA
GTGGTGTTCTGGAAGTGCAAGGACGTCGTGTCGATGGACACGGCCACGGA
CCAAAACGACCTCTTCGTACGCAGCTGGGTGGAGGGCTGCGACGCCCAGG
AGACCGACACGCATTGGTTCGCCAAGAAAGGCAAGGGGTCGTTCAACTGG
CGAATGAAGTTCAAGGTGCCCCTCGGCCCACGTACCAAGGCGTGGAAATT
TCCATACCTCACCGTGCAGGTAGTTCGCCAAGAAAGGCAAGGGGTCGTTC
AACTGGCGAATGAAGTTCAAGGTGCCCCTCGGCCCACGTACCAAGGCGTG
GAAATTTCCATACCTCACCGTGCAGGTA
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