mRNA_H-canaliculatus_F_contig14709.3595.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14709.3595.1
Unique NamemRNA_H-canaliculatus_F_contig14709.3595.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14709.3595.1 vs. uniprot
Match: D7G1J7_ECTSI (Ubiquinone Biosynthesis Monooxygenase COQ6 (C-terminal region) Ubiquinone Biosynthesis Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 2.120e-17
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1
Query:    1 VKLSGSHEEIAFQRYLSKGPLAMLPLKGGNMASLVWSTTPEHAESLK 141
            VKL+ SH E+AFQRYLS+GPLAMLPL GG +ASLVWSTTPEHAESLK
Sbjct:  289 VKLAESHGEVAFQRYLSRGPLAMLPLPGGKLASLVWSTTPEHAESLK 335          
BLAST of mRNA_H-canaliculatus_F_contig14709.3595.1 vs. uniprot
Match: A0A6H5KUH3_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.790e-16
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1
Query:    1 VKLSGSHEEIAFQRYLSKGPLAMLPLKGGNMASLVWSTTPEHAESLK 141
            VKL+ SH E+AFQRYLS+GPLAMLPL GG +ASLVWSTTP HAESLK
Sbjct:  191 VKLAESHGEVAFQRYLSRGPLAMLPLPGGKLASLVWSTTPVHAESLK 237          
BLAST of mRNA_H-canaliculatus_F_contig14709.3595.1 vs. uniprot
Match: A0A2C5Z9P5_9HYPO (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Ophiocordyceps australis TaxID=1399860 RepID=A0A2C5Z9P5_9HYPO)

HSP 1 Score: 60.5 bits (145), Expect = 3.960e-9
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   13 GSHEEIAFQRYLSKGPLAMLPLKGGNMASLVWSTTPEHAESLK 141
            G H ++A+QR+L  GP+AMLPL G N A+LVWSTTPEHA  LK
Sbjct:  308 GEHTKVAYQRFLPTGPVAMLPLPG-NYATLVWSTTPEHASLLK 349          
BLAST of mRNA_H-canaliculatus_F_contig14709.3595.1 vs. uniprot
Match: A0A1G0J3A4_9GAMM (FAD_binding_3 domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=A0A1G0J3A4_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 9.890e-9
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1
Query:    1 VKLSGSHEEIAFQRYLSKGPLAMLPLKGGNMASLVWSTTPEHAESLKVSFAETSRTRL 174
            +K    H++ A+QR+LS GPLA LPL+  +  S+VWST P HAE LK    E    +L
Sbjct:  193 IKTEKPHQQTAYQRFLSSGPLAFLPLQDSHSCSIVWSTDPTHAEILKTMNKENFELQL 250          
BLAST of mRNA_H-canaliculatus_F_contig14709.3595.1 vs. uniprot
Match: A0A6A5XJA4_9PLEO (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Aaosphaeria arxii CBS 175.79 TaxID=1450172 RepID=A0A6A5XJA4_9PLEO)

HSP 1 Score: 59.3 bits (142), Expect = 1.010e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   13 GSHEEIAFQRYLSKGPLAMLPLKGGNMASLVWSTTPEHAESLK 141
            G+  +IA+QR+L  GPLAMLPL G NMA+LVWSTTPE A  LK
Sbjct:  261 GADHKIAYQRFLPSGPLAMLPLPG-NMATLVWSTTPERAAKLK 302          
BLAST of mRNA_H-canaliculatus_F_contig14709.3595.1 vs. uniprot
Match: A0A6A6VZR0_9PEZI (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6VZR0_9PEZI)

HSP 1 Score: 58.9 bits (141), Expect = 1.380e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   13 GSHEEIAFQRYLSKGPLAMLPLKGGNMASLVWSTTPEHAESLK 141
            G+  +IA+QR+L  GP+AMLPL G NMASLVWSTTPE A  LK
Sbjct:  261 GNTHKIAYQRFLPTGPIAMLPLPG-NMASLVWSTTPERASRLK 302          
BLAST of mRNA_H-canaliculatus_F_contig14709.3595.1 vs. uniprot
Match: A0A2D9JPJ9_9GAMM (FAD_binding_3 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D9JPJ9_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 1.860e-8
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 VKLSGSHEEIAFQRYLSKGPLAMLPLKGGNMASLVWSTTPEHAESLKVSFAETSRTRL 174
            ++L  SHEE A+QR+LS GP+AMLPL G +  S+VWSTTP+ A +L     +  +TR+
Sbjct:  193 LRLELSHEETAWQRFLSTGPIAMLPLPG-DYGSIVWSTTPDEAAALVTMDIDAFQTRV 249          
BLAST of mRNA_H-canaliculatus_F_contig14709.3595.1 vs. uniprot
Match: A0A6A6URX6_9PEZI (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6URX6_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 1.880e-8
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   25 EIAFQRYLSKGPLAMLPLKGGNMASLVWSTTPEHAESLKVSFAE 156
            +IA+QR+LS GP+AMLPL G  MASLVWSTTPE AE LK    E
Sbjct:  259 KIAYQRFLSTGPIAMLPLPG-KMASLVWSTTPERAEVLKALSEE 301          
BLAST of mRNA_H-canaliculatus_F_contig14709.3595.1 vs. uniprot
Match: A0A2C5YHS3_9HYPO (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Ophiocordyceps australis TaxID=1399860 RepID=A0A2C5YHS3_9HYPO)

HSP 1 Score: 58.2 bits (139), Expect = 2.580e-8
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   13 GSHEEIAFQRYLSKGPLAMLPLKGGNMASLVWSTTPEHAESLK 141
            G H ++A+QR+L  GP+AMLPL G   A+LVWSTTPEHA  LK
Sbjct:  256 GEHTKVAYQRFLPTGPVAMLPLPG-KYATLVWSTTPEHASLLK 297          
BLAST of mRNA_H-canaliculatus_F_contig14709.3595.1 vs. uniprot
Match: A0A6G1HGS4_9PEZI (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Aulographum hederae CBS 113979 TaxID=1176131 RepID=A0A6G1HGS4_9PEZI)

HSP 1 Score: 58.2 bits (139), Expect = 2.580e-8
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   13 GSHEEIAFQRYLSKGPLAMLPLKGGNMASLVWSTTPEHAESLK 141
            GS  +IA+QR+L  GP+A+LPL G NMASLVWSTTP+ A  LK
Sbjct:  260 GSEHKIAYQRFLPTGPIALLPLPG-NMASLVWSTTPDRAARLK 301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14709.3595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1J7_ECTSI2.120e-1782.98Ubiquinone Biosynthesis Monooxygenase COQ6 (C-term... [more]
A0A6H5KUH3_9PHAE1.790e-1680.85FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A2C5Z9P5_9HYPO3.960e-965.12Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A1G0J3A4_9GAMM9.890e-946.55FAD_binding_3 domain-containing protein n=3 Tax=Ba... [more]
A0A6A5XJA4_9PLEO1.010e-867.44Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A6A6VZR0_9PEZI1.380e-867.44Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A2D9JPJ9_9GAMM1.860e-850.00FAD_binding_3 domain-containing protein n=1 Tax=Ga... [more]
A0A6A6URX6_9PEZI1.880e-868.18Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A2C5YHS3_9HYPO2.580e-862.79Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A6G1HGS4_9PEZI2.580e-865.12Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14709contigH-canaliculatus_F_contig14709:350..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue4.9e-14
Seed eggNOG ortholog2880.D7G1J7
Preferred nameCOQ6
KEGG rclassRC02670
KEGG koko:K06126,ko:K21437
KEGG ReactionR04982,R08773
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00128
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG3855@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929216.245283-CDS-H-canaliculatus_F_contig14709:349..5411622929216.245283-CDS-H-canaliculatus_F_contig14709:349..541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14709 350..541 +
1696845721.8084548-CDS-H-canaliculatus_F_contig14709:349..5411696845721.8084548-CDS-H-canaliculatus_F_contig14709:349..541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14709 350..541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14709.3595.1prot_H-canaliculatus_F_contig14709.3595.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14709 350..541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14709.3595.1

>prot_H-canaliculatus_F_contig14709.3595.1 ID=prot_H-canaliculatus_F_contig14709.3595.1|Name=mRNA_H-canaliculatus_F_contig14709.3595.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=64bp
VKLSGSHEEIAFQRYLSKGPLAMLPLKGGNMASLVWSTTPEHAESLKVSF
AETSRTRLRALRA*
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mRNA from alignment at H-canaliculatus_F_contig14709:350..541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14709.3595.1 ID=mRNA_H-canaliculatus_F_contig14709.3595.1|Name=mRNA_H-canaliculatus_F_contig14709.3595.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=192bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14709:350..541+ (Hapterophycus canaliculatus Oshoro5f female)
GTGAAGCTGTCAGGTTCCCACGAGGAGATCGCGTTCCAGCGGTATCTGTC GAAGGGGCCACTGGCGATGCTCCCTCTTAAGGGAGGGAACATGGCGTCGC TGGTGTGGTCCACCACGCCCGAACACGCCGAGAGCCTCAAGGTCAGTTTT GCGGAAACCTCACGCACGCGCTTACGTGCCCTGCGAGCCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14709:350..541+

>mRNA_H-canaliculatus_F_contig14709.3595.1 ID=mRNA_H-canaliculatus_F_contig14709.3595.1|Name=mRNA_H-canaliculatus_F_contig14709.3595.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=384bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14709:350..541+ (Hapterophycus canaliculatus Oshoro5f female)
GTGAAGCTGTCAGGTTCCCACGAGGAGATCGCGTTCCAGCGGTATCTGTC
GAAGGGGCCACTGGCGATGCTCCCTCTTAAGGGAGGGAACATGGCGTCGC
TGGTGTGGTCCACCACGCCCGAACACGCCGAGAGCCTCAAGGTCAGTTTT
GCGGAAACCTCACGCACGCGCTTACGTGCCCTGCGAGCCTGAGTGAAGCT
GTCAGGTTCCCACGAGGAGATCGCGTTCCAGCGGTATCTGTCGAAGGGGC
CACTGGCGATGCTCCCTCTTAAGGGAGGGAACATGGCGTCGCTGGTGTGG
TCCACCACGCCCGAACACGCCGAGAGCCTCAAGGTCAGTTTTGCGGAAAC
CTCACGCACGCGCTTACGTGCCCTGCGAGCCTGA
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