mRNA_H-canaliculatus_F_contig147.3589.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig147.3589.1
Unique NamemRNA_H-canaliculatus_F_contig147.3589.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig147.3589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig147contigH-canaliculatus_F_contig147:27885..29270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929215.6767685-CDS-H-canaliculatus_F_contig147:27884..280761622929215.6767685-CDS-H-canaliculatus_F_contig147:27884..28076Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig147 27885..28076 -
1696845721.5292473-CDS-H-canaliculatus_F_contig147:27884..280761696845721.5292473-CDS-H-canaliculatus_F_contig147:27884..28076Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig147 27885..28076 -
1622929215.6873503-CDS-H-canaliculatus_F_contig147:29192..292701622929215.6873503-CDS-H-canaliculatus_F_contig147:29192..29270Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig147 29193..29270 -
1696845721.5415823-CDS-H-canaliculatus_F_contig147:29192..292701696845721.5415823-CDS-H-canaliculatus_F_contig147:29192..29270Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig147 29193..29270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig147.3589.1prot_H-canaliculatus_F_contig147.3589.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig147 27885..29270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig147.3589.1

>prot_H-canaliculatus_F_contig147.3589.1 ID=prot_H-canaliculatus_F_contig147.3589.1|Name=mRNA_H-canaliculatus_F_contig147.3589.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
NETPQAAWTAGAKPYNWIVSTFDSTTLVVTSIAFDDGAGTYEYELKLFDV
SSVGDGIGDIVTVKESFQSVPTDFYAAAVAISRDNEQVL*
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mRNA from alignment at H-canaliculatus_F_contig147:27885..29270-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig147.3589.1 ID=mRNA_H-canaliculatus_F_contig147.3589.1|Name=mRNA_H-canaliculatus_F_contig147.3589.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1386bp|location=Sequence derived from alignment at H-canaliculatus_F_contig147:27885..29270- (Hapterophycus canaliculatus Oshoro5f female)
AATGAAACACCTCAAGCCGCATGGACGGCGGGGGCCAAGCCCTACAACTG
GATAGTATCTACTTTTGACAGCACGACGGTAAGAGGTAGCTGTGGACTGA
AATCTACGCTTGTCCCGCAGGATGTGATCGTTGTTGTTTGCTAGACTCGA
GTCTGTAAAACTTGCTTTCCATCGAGCTCGTTAAGCTCAATTTACGATAT
TATTTATCCAAGCAGTCGACGTCCATCACTAGTTAAGGCAGACCGTCCCG
CCCACGCCTGAGCTCCAAGCCACCAGACACACACACAAGGAACCCTTCAT
TTTGGAGCCTCAAAGAGGATTAAGGAATGAGCATTCACGCGCATCTTAGG
CATTCTCAAGGCAAAAGTTCTTTCAATCTTGGCGGGAGCACAGACCTATG
TATGGGGTGTTGATGGAGGCAAGATGGCTCAAAGAAAATACACATCAGTC
CTACTTCTAGACGTATCTATACGCCTTGAAGTAGCAGTAAGCACACTGGA
GAAGCTTTGTACTATGTCGTACGTCGCGGAAATACGTACGTACCCTACAT
ATAACAGTTGCTCTTGAACTTTAATGGTGTTCGTGATAGGCAAGGCTCTC
ACACGGCGCATAAGAAACGGCTTTGGCAAGACGGCTTGGCTACTCCCTCT
GCCAGCCGTATCTGCATCTTGTTCTTTGGACCGTTCTTATATAGCTCCGG
AGCGATCAATATGGCGTCGGTTCGCGAGTCTGGCACGGAGTTAGTTTTCG
AACACGTGGTTCCCCCGGTTCCTTGTCGAATCGCAGCTATTAATTGCGCT
CGATCATGCCGTCTTACGTCCCTTCACCGCCAAACGTCGCTTCAACGCTG
TACTAAGTCCAAAAATCATTAGAGCAAATTATTGGGCGCCAGGAATGCAA
GAAAGGCGAACCTGCACGCGAAGTTCACTGAAATGAGAAAACAACTGTAT
CACGGTGGCTAGGCTTCGCTCGATGTTTGCGCAAATCACCATGTATAGGC
TGGCCGGCCGTTCGATCAACGGTGCAGCTCTGAAGTCACTCGCCATGTGC
AATTGACCTTTGCCAAAAGTCTTGCCGCGTTTCAACAAACTTTTTAGGAG
GCGTGGCCCGGCACTTCATCCCTGGCCTCCGTCGGCTCGTGCGGCCTTTC
AACCTTCTCCCGTCGCGCTTGTGTTTTACGCTCGCTGATTTCAGTTGGTA
GTCACGTCGATCGCCTTCGATGACGGAGCTGGCACGTATGAATATGAGCT
GAAGCTCTTCGACGTCTCCAGTGTCGGCGATGGCATTGGGGATATAGTGA
CGGTCAAAGAGTCGTTCCAGAGCGTACCGACAGACTTCTATGCGGCAGCT
GTCGCCATTAGCAGGGACAACGAACAGGTGCTTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig147:27885..29270-

>mRNA_H-canaliculatus_F_contig147.3589.1 ID=mRNA_H-canaliculatus_F_contig147.3589.1|Name=mRNA_H-canaliculatus_F_contig147.3589.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig147:27885..29270- (Hapterophycus canaliculatus Oshoro5f female)
AATGAAACACCTCAAGCCGCATGGACGGCGGGGGCCAAGCCCTACAACTG
GATAGTATCTACTTTTGACAGCACGACGAATGAAACACCTCAAGCCGCAT
GGACGGCGGGGGCCAAGCCCTACAACTGGATAGTATCTACTTTTGACAGC
ACGACGTTGGTAGTCACGTCGATCGCCTTCGATGACGGAGCTGGCACGTA
TGAATATGAGCTGAAGCTCTTCGACGTCTCCAGTGTCGGCGATGGCATTG
GGGATATAGTGACGGTCAAAGAGTCGTTCCAGAGCGTACCGACAGACTTC
TATGCGGCAGCTGTCGCCATTAGCAGGGACAACGAACAGGTGCTTTGATT
GGTAGTCACGTCGATCGCCTTCGATGACGGAGCTGGCACGTATGAATATG
AGCTGAAGCTCTTCGACGTCTCCAGTGTCGGCGATGGCATTGGGGATATA
GTGACGGTCAAAGAGTCGTTCCAGAGCGTACCGACAGACTTCTATGCGGC
AGCTGTCGCCATTAGCAGGGACAACGAACAGGTGCTTTGA
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