mRNA_H-canaliculatus_F_contig14698.3586.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14698.3586.1
Unique NamemRNA_H-canaliculatus_F_contig14698.3586.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14698.3586.1 vs. uniprot
Match: A0A6H5LGC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 4.830e-28
Identity = 65/91 (71.43%), Postives = 79/91 (86.81%), Query Frame = 3 
Query:  264 EWERARATLDDMTAAEHLPAPPAEAFQAVLGACDASGRVGEALDVAQAMVVAGYAPSARLVARLMASHSEELEIERREAEEAAAAPAED*G 536
            +WERARA LDDMTAA+HLP PP EAF+AVLGACD++GRVGEAL++AQ MV AG++PS  L+ RLMASH++EL+ ERRE EEAAA PAE+ G
Sbjct: 1343 DWERARAILDDMTAADHLPPPPEEAFRAVLGACDSAGRVGEALEIAQVMVGAGFSPSIALMTRLMASHADELDRERREMEEAAAEPAEEWG 1433
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BLAST of mRNA_H-canaliculatus_F_contig14698.3586.1 vs. uniprot
Match: D7FX74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX74_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.530e-27
Identity = 64/91 (70.33%), Postives = 79/91 (86.81%), Query Frame = 3 
Query:  264 EWERARATLDDMTAAEHLPAPPAEAFQAVLGACDASGRVGEALDVAQAMVVAGYAPSARLVARLMASHSEELEIERREAEEAAAAPAED*G 536
            +WERARA LDDMTAA+HLP PP EAF+AVLGACD++GRVGEAL++AQ MV AG++PS  L+ RL+ASH++EL+ ERRE EEAAA PAE+ G
Sbjct: 1077 DWERARAILDDMTAADHLPPPPEEAFRAVLGACDSAGRVGEALEIAQVMVGAGFSPSISLMTRLIASHADELDRERREMEEAAAEPAEEWG 1167
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14698.3586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LGC4_9PHAE4.830e-2871.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX74_ECTSI1.530e-2770.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14698contigH-canaliculatus_F_contig14698:2..1049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue5.6e-20
Seed eggNOG ortholog2880.D7FX74
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1048
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14698.3586.1prot_H-canaliculatus_F_contig14698.3586.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14698 298..534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.7288473-UTR-H-canaliculatus_F_contig14698:1..2971622929214.7288473-UTR-H-canaliculatus_F_contig14698:1..297Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14698 2..297 +
1696845721.0274143-UTR-H-canaliculatus_F_contig14698:1..2971696845721.0274143-UTR-H-canaliculatus_F_contig14698:1..297Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14698 2..297 +
1622929214.7517452-UTR-H-canaliculatus_F_contig14698:534..10491622929214.7517452-UTR-H-canaliculatus_F_contig14698:534..1049Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14698 535..1049 +
1696845721.054575-UTR-H-canaliculatus_F_contig14698:534..10491696845721.054575-UTR-H-canaliculatus_F_contig14698:534..1049Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14698 535..1049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.740854-CDS-H-canaliculatus_F_contig14698:297..5341622929214.740854-CDS-H-canaliculatus_F_contig14698:297..534Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14698 298..534 +
1696845721.040732-CDS-H-canaliculatus_F_contig14698:297..5341696845721.040732-CDS-H-canaliculatus_F_contig14698:297..534Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14698 298..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14698.3586.1

>prot_H-canaliculatus_F_contig14698.3586.1 ID=prot_H-canaliculatus_F_contig14698.3586.1|Name=mRNA_H-canaliculatus_F_contig14698.3586.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=79bp
MTAAEHLPAPPAEAFQAVLGACDASGRVGEALDVAQAMVVAGYAPSARLV
ARLMASHSEELEIERREAEEAAAAPAED*
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mRNA from alignment at H-canaliculatus_F_contig14698:2..1049+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14698.3586.1 ID=mRNA_H-canaliculatus_F_contig14698.3586.1|Name=mRNA_H-canaliculatus_F_contig14698.3586.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1048bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14698:2..1049+ (Hapterophycus canaliculatus Oshoro5f female)
GAGACGCGCCGACGCCGGAGACCGCTTCTCGGCGAGAGACCAGCGGTGGG
ACCCCCGCGTCGCAGCCGTTTTCGCCCCCCGCTTCGCGCGTCGGCGCGGT
TGACGTGCTGTCTCCGCCGGCGGCGACGGAGAGGCTGGCGGGTCCGGGGG
GCCGCGGTGAGAGCCTGCCCGCTGCGGGCAACGGCGGCGAGGGAGACGGC
AGCGGCAGCAGCGGCAGCAGCGGCAGCGCAGCTCCAAGCAGCGGGGTTGA
AGACGAAGGGATCGAGTGGGAAAGAGCGAGGGCGACGCTGGACGACATGA
CGGCTGCGGAGCATCTGCCCGCTCCGCCTGCGGAGGCGTTCCAGGCCGTG
CTAGGCGCTTGCGATGCCTCCGGGAGGGTGGGGGAGGCGCTTGATGTCGC
CCAGGCGATGGTGGTTGCGGGGTATGCCCCTAGCGCTCGCTTGGTGGCTC
GCTTGATGGCGAGCCACTCTGAGGAGTTGGAAATAGAGAGAAGGGAAGCG
GAGGAGGCAGCGGCCGCGCCTGCGGAAGACTAGGGGGGCAAAAGATCAGG
AACGCAGGCTTGGTTGGTCATTGATTATTTATGTCAGAGACATTTGGGCC
TGAAATCAATGTCTCGAAAATTAACACTTTTTATCTTCAGTCGCACATGA
GCCCTTGCACCCGCCAGAAAAGGGTTTGGTTTGTCTCGTTGGTCAGGAGA
AGAGTGCAGGGAAGATGGACCCTTGATAGAAAAATGTGGTGCCGGAGGCA
TCGGTTGACTCCGACTAACTCTTGGCTTTTGTTTATCCGGTTTTGATATT
CGTCGTCTATTAGGACGTTTGTGGTGGTGAAGATATTGAGAGAGAATCTC
GCGCATGACCGCATCACAAAAGGCTTCTGCTTTTCGGGTCATCGAAGGTT
CTAAACAGCGAACTTCCGAGCCAGCCATCGTACATCGTGGCAGCCCGAAC
GGGCTTGTCATGCCTTCTCGGGGGGGGGGCGGGGCGCCGAGTCCGGAGGC
CACCGCCACGGCTACCACAAGCGAGAGGTTTATTTCCTCCAAGTTGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14698:2..1049+

>mRNA_H-canaliculatus_F_contig14698.3586.1 ID=mRNA_H-canaliculatus_F_contig14698.3586.1|Name=mRNA_H-canaliculatus_F_contig14698.3586.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=474bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14698:2..1049+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGGCTGCGGAGCATCTGCCCGCTCCGCCTGCGGAGGCGTTCCAGGC
CGTGCTAGGCGCTTGCGATGCCTCCGGGAGGGTGGGGGAGGCGCTTGATG
TCGCCCAGGCGATGGTGGTTGCGGGGTATGCCCCTAGCGCTCGCTTGGTG
GCTCGCTTGATGGCGAGCCACTCTGAGGAGTTGGAAATAGAGAGAAGGGA
AGCGGAGGAGGCAGCGGCCGCGCCTGCGGAAGACTAGATGACGGCTGCGG
AGCATCTGCCCGCTCCGCCTGCGGAGGCGTTCCAGGCCGTGCTAGGCGCT
TGCGATGCCTCCGGGAGGGTGGGGGAGGCGCTTGATGTCGCCCAGGCGAT
GGTGGTTGCGGGGTATGCCCCTAGCGCTCGCTTGGTGGCTCGCTTGATGG
CGAGCCACTCTGAGGAGTTGGAAATAGAGAGAAGGGAAGCGGAGGAGGCA
GCGGCCGCGCCTGCGGAAGACTAG
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