mRNA_H-canaliculatus_F_contig14683.3581.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14683.3581.1
Unique NamemRNA_H-canaliculatus_F_contig14683.3581.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14683.3581.1 vs. uniprot
Match: A0A7S1C6P3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6P3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.490e-9
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 2 
Query:   74 TGRWSKSEHEAFLKGILRHGKSFKSIKQEFIPTRTVSQVKTHAKKHFLKLQKRGQLEERS 253
            TGRW++ EHE F+KG+  +G+ +K +    IP+RTV Q++THA+K+F KL K   L+ R+
Sbjct:   20 TGRWTRDEHERFVKGLELYGREWKKV-ASMIPSRTVVQIRTHAQKYFQKLAKEQGLDPRA 78
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BLAST of mRNA_H-canaliculatus_F_contig14683.3581.1 vs. uniprot
Match: A0A6V1NQ49_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NQ49_HETAK)

HSP 1 Score: 61.6 bits (148), Expect = 9.760e-9
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 2 
Query:   74 TGRWSKSEHEAFLKGILRHGKSFKSIKQEFIPTRTVSQVKTHAKKHFLKLQK 229
            TGRW+  EH  FLK +  HGK++K++ Q F+ TR+V QV+THA+KHFLK+ K
Sbjct:   40 TGRWTPEEHNLFLKALSIHGKNWKTVAQ-FVGTRSVVQVRTHAQKHFLKMAK 90
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BLAST of mRNA_H-canaliculatus_F_contig14683.3581.1 vs. uniprot
Match: F0YJ37_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJ37_AURAN)

HSP 1 Score: 57.8 bits (138), Expect = 1.370e-8
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 2 
Query:   80 RWSKSEHEAFLKGILRHGKSFKSIKQEFIPTRTVSQVKTHAKKHFLKLQKRGQLEERSGEPSAV 271
            RW+  EHE FL G+ R GK +K IK E IPT+TV+QV+THA  HF K+     L    G+P A+
Sbjct:    1 RWTAREHELFLDGLERFGKKWKLIK-ELIPTKTVTQVRTHANGHFSKM-----LRRTVGKPDAL 58
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BLAST of mRNA_H-canaliculatus_F_contig14683.3581.1 vs. uniprot
Match: A0A5A8E8J8_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E8J8_CAFRO)

HSP 1 Score: 61.6 bits (148), Expect = 2.160e-8
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 2 
Query:   65 KMCTGRWSKSEHEAFLKGILRHGKSFKSIKQEFIPTRTVSQVKTHAKKHFLKLQKRGQ----LEERSGEPSAVGAA 280
            K  +GRW+  EH+ F++G+ R G+ ++SI Q  +PTR+V Q++THA+K F+KL+K GQ    ++ R G  + V  A
Sbjct:    8 KGTSGRWTVLEHDMFVEGLRRFGRCWRSISQ-LVPTRSVVQIRTHAQKFFMKLEKTGQEIPTMDNRPGGQAPVDVA 82
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BLAST of mRNA_H-canaliculatus_F_contig14683.3581.1 vs. uniprot
Match: A0A7S0PCF2_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PCF2_CAFRO)

HSP 1 Score: 61.6 bits (148), Expect = 2.210e-8
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 2 
Query:   65 KMCTGRWSKSEHEAFLKGILRHGKSFKSIKQEFIPTRTVSQVKTHAKKHFLKLQKRGQ----LEERSGEPSAVGAA 280
            K  +GRW+  EH+ F++G+ R G+ ++SI Q  +PTR+V Q++THA+K F+KL+K GQ    ++ R G  + V  A
Sbjct:    8 KGTSGRWTVLEHDMFVEGLRRFGRCWRSISQ-LVPTRSVVQIRTHAQKFFMKLEKTGQEIPTMDNRPGGQAPVDVA 82
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BLAST of mRNA_H-canaliculatus_F_contig14683.3581.1 vs. uniprot
Match: A0A7S3XSC1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSC1_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 2.870e-8
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 2 
Query:    5 GKAPTGRD*AMADDTKKAPIKMCTGRWSKSEHEAFLKGILRHGKSFKSIKQEFIPTRTVSQVKTHAKKHFLKLQKRGQLEERSGEPSAV 271
            G    GR     DD++    K   GRW++ EH  FL+G+ + GK +K I    + TRTV Q++THA+K+FLKL+K+    +R+ +PS++
Sbjct:   38 GAQAVGRKNDQQDDSRNGSEKQ--GRWNEEEHRLFLQGVEKFGKDWKQI-STVVLTRTVVQIRTHAQKYFLKLEKK----QRAIQPSSL 119
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BLAST of mRNA_H-canaliculatus_F_contig14683.3581.1 vs. uniprot
Match: A0A1V9ZGA4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGA4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.510e-8
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:   41 DDTKKAPIKMCTGRWSKSEHEAFLKGILRHGKSFKSIKQEFIPTRTVSQVKTHAKKHFLKLQK 229
            D + K+ ++  TGRW+K EHE FL+G+ R+GKS+K I    + TRT+ Q++THA+K+  K  K
Sbjct:   69 DGSTKSNVETHTGRWTKKEHELFLEGLRRYGKSWKHI-ANLVVTRTLVQIRTHAQKYLQKQNK 130
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BLAST of mRNA_H-canaliculatus_F_contig14683.3581.1 vs. uniprot
Match: UPI00098E583E (protein REVEILLE 8-like isoform X3 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E583E)

HSP 1 Score: 59.3 bits (142), Expect = 8.620e-8
Identity = 27/52 (51.92%), Postives = 41/52 (78.85%), Query Frame = 2 
Query:   80 RWSKSEHEAFLKGILRHGKSFKSIKQEFIPTRTVSQVKTHAKKHFLKLQKRG 235
            RWS+ EHE FL G+L  G+ +K I ++F+ T+TV Q+++HA+K+FLK+QK G
Sbjct:   22 RWSEEEHERFLDGLLLFGREWKKI-EDFVGTKTVIQIRSHAQKYFLKVQKNG 72
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BLAST of mRNA_H-canaliculatus_F_contig14683.3581.1 vs. uniprot
Match: D8LPV2_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV2_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 9.260e-8
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:   62 IKMCTGRWSKSEHEAFLKGILRHGKSFKSIKQEFIPTRTVSQVKTHAKKHFLKLQKR----GQLE--ERSGEPSAVGAA 280
            + + TGRW+K E E F +G+ +HGK++    +EF+PTR V QV+THA+K+F K +K     GQ E  ++ GE +  G A
Sbjct:   38 VTLRTGRWTKKECEDFARGLEKHGKAWS---KEFVPTRKVPQVRTHARKYFAKQRKAMMLSGQSEGGDQDGEQTQGGGA 113
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BLAST of mRNA_H-canaliculatus_F_contig14683.3581.1 vs. uniprot
Match: R9YZ62_NARTA (MYB transcription factor n=7 Tax=Amaryllidoideae TaxID=703251 RepID=R9YZ62_NARTA)

HSP 1 Score: 59.3 bits (142), Expect = 9.340e-8
Identity = 27/52 (51.92%), Postives = 41/52 (78.85%), Query Frame = 2 
Query:   80 RWSKSEHEAFLKGILRHGKSFKSIKQEFIPTRTVSQVKTHAKKHFLKLQKRG 235
            RWS+ EHE FL G+L  G+ +K I ++F+ T+TV Q+++HA+K+FLK+QK G
Sbjct:   22 RWSEEEHERFLDGLLLFGREWKKI-EDFVGTKTVIQIRSHAQKYFLKVQKNG 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14683.3581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C6P3_9STRA7.490e-946.67Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6V1NQ49_HETAK9.760e-955.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0YJ37_AURAN1.370e-850.00Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A5A8E8J8_CAFRO2.160e-842.11Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7S0PCF2_CAFRO2.210e-842.11Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A7S3XSC1_HETAK2.870e-839.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1V9ZGA4_9STRA4.510e-846.03Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
UPI00098E583E8.620e-851.92protein REVEILLE 8-like isoform X3 n=1 Tax=Asparag... [more]
D8LPV2_ECTSI9.260e-843.04Nucleotidyltransferase family protein n=1 Tax=Ecto... [more]
R9YZ62_NARTA9.340e-851.92MYB transcription factor n=7 Tax=Amaryllidoideae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14683contigH-canaliculatus_F_contig14683:53..1940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog2850.Phatr46535
KEGG koko:K11865
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0097159,GO:1901363
EggNOG free text desc.ubiquitin modification-dependent histone binding
EggNOG OGsKOG0724@1,KOG0724@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size409
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14683.3581.1prot_H-canaliculatus_F_contig14683.3581.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14683 53..1906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.1106677-CDS-H-canaliculatus_F_contig14683:52..3161622929214.1106677-CDS-H-canaliculatus_F_contig14683:52..316Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14683 53..316 -
1696845720.7513947-CDS-H-canaliculatus_F_contig14683:52..3161696845720.7513947-CDS-H-canaliculatus_F_contig14683:52..316Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14683 53..316 -
1622929214.1202943-CDS-H-canaliculatus_F_contig14683:671..7611622929214.1202943-CDS-H-canaliculatus_F_contig14683:671..761Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14683 672..761 -
1696845720.762566-CDS-H-canaliculatus_F_contig14683:671..7611696845720.762566-CDS-H-canaliculatus_F_contig14683:671..761Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14683 672..761 -
1622929214.138606-CDS-H-canaliculatus_F_contig14683:1885..19061622929214.138606-CDS-H-canaliculatus_F_contig14683:1885..1906Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14683 1886..1906 -
1696845720.7716317-CDS-H-canaliculatus_F_contig14683:1885..19061696845720.7716317-CDS-H-canaliculatus_F_contig14683:1885..1906Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14683 1886..1906 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.1515377-UTR-H-canaliculatus_F_contig14683:1906..19401622929214.1515377-UTR-H-canaliculatus_F_contig14683:1906..1940Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14683 1907..1940 -
1696845720.7807696-UTR-H-canaliculatus_F_contig14683:1906..19401696845720.7807696-UTR-H-canaliculatus_F_contig14683:1906..1940Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14683 1907..1940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14683.3581.1

>prot_H-canaliculatus_F_contig14683.3581.1 ID=prot_H-canaliculatus_F_contig14683.3581.1|Name=mRNA_H-canaliculatus_F_contig14683.3581.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
MADDTKKAPIKMCTGRWSKSEHEAFLKGILRHGKSFKSIKQEFIPTRTVS
QVKTHAKKHFLKLQKRGQLEERSGEPSAVGAAAASPTKKKSRREERSSLR
NKKNNNGDGSVKNRRTRRAKKGREG
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mRNA from alignment at H-canaliculatus_F_contig14683:53..1940-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14683.3581.1 ID=mRNA_H-canaliculatus_F_contig14683.3581.1|Name=mRNA_H-canaliculatus_F_contig14683.3581.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1888bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14683:53..1940- (Hapterophycus canaliculatus Oshoro5f female)
CGGCGGGAAGGCGCCAACAGGGAGAGACTGAGCGATGGCAGACGATACGA
AAAAGGTGCGTGACTTGCCAGCTGGGTTGTTGTTCGGTGGCGCACGTTTG
GCAGCCGCAACTCAAAGCTCAAGAAATATCCCGAGACAAACTACCTATGG
GAGCGTTTGAACTGAACTGCAATGTTCGACGATGTACCGCTGGTTCGTGT
TGGCTTGGCCGGCCGTTCGATCTCGCGCTCATCTCCTGGACCGGTAGAAT
TGGTGCTCCAGAGTACAAGCGTGGTGTCCTGGATCGTGTTGAACTTTCGG
GATGTGATTCTTGACCGCGGCAGAGGTTTCTGCGATAGTAACCAATGCTG
GTACGACACAGCAGTATTGAGAACAGGAGGGAGGGGAGGGAGAGGTGGGA
GACTGTTGGCAGACTCCTGTAGTGTTAAGTCATGAACCTCATGTTTACCT
CCACTTTCTCGTGTTTATATGCTGCTGGTGTCGCCCGCTTAGGAGGACGC
ACCACGCTTGCCGTCGGGTGTTGTATTTTAGAAAGCAAGTTGCCCGCAAA
GCACCAGACATCGAACGAGCTAATTGGGTCCATGAGGATTTTTTTGTTTG
GATGCGCCGCTTCCCACGGGTTGAGAGCAACACCTGACAAATCGTCCCAC
CCAGGGTAAACACACCGCTTATCACAGGTTGTTGCTCGTGGAGCTTTGGA
TGCGGATTTTGCGACACAGCAACGCGAAATCTACAAGTCTAGCGCCGGAG
AGAAAACAACTTGCGACAGGCCTTTCCCTCGGTGCCGCCGTGCTCAGCTC
GGATGCTATCCTCCACGTTTCATTCCTTGACAACAAATTAAGAACGAACA
CGATCGTCCTCCGTTTGTGTAACGTAAATCATGGCACCTGCGGTAGCGGC
TAGCGACTAGCGGCTTTCACTTTCTTCCCGCGTACCTGGTGCCAGGTAGG
ACCTCCGAAAGGGCTGGCTAAGAGTCGTCACAGCCGTCTGGGCGTCGGCC
CCGGGACACCCGCAAAACGCTGTCGCGCGGAGCGGAAAACCTCTATTGCA
AAAAAATGACGATGATGATGGCCATGAGGAGGGTGGCGCACAACCCTGTT
TGTGTCATCCAGGCAGGGATGCTGACGCCATGACTAACACTCTCCCCCCC
CCGGTCCGCCCTGGTTCCGACGACGCCAGGCGCCGATAAAAATGTGCACG
GGGAGGTGGTCGAAATCAGAGCACGAGGCCTTCCTCAAGGGCATCCTCCG
GCACGGTAAATCTTTCAAGGTGCGGGACAACAAGAACAACAAGAACAACA
AGAACAACAAGAACAACAAGATAGTCAAACACCTCTTATCTTGTCGCGGA
CTGTGCGATTCATTCGTGGGTGAGACAATCGACAGGAAAAAGAGGGCAGG
GGCAGCAAGACACCCTGGCCGAGCGTCCCTTCCGCTAGAGCAGTTGAATC
GCTTATCATCTCTCGTTTCTAGGCGAGCGTGTTTCGCCCCTTGGTTTTGC
TGGCGGTGGAACCACGTGATCCTCGAACATCCTGATCGCCGTGCTTGGGC
GGCGAACCTGACCAAGCCGACCAAATACCTTCCTTGTGCGCGTGCAATCG
ATGGAACCTTGCGCGGCGGAGAAGTCTATCAAGCAAGAGTTTATCCCCAC
GCGGACGGTCTCCCAAGTGAAGACGCACGCCAAGAAGCACTTCCTGAAGC
TTCAAAAACGAGGACAGCTCGAAGAACGTTCCGGGGAACCGTCCGCCGTC
GGCGCCGCAGCCGCGTCGCCGACCAAGAAGAAGTCGCGCAGGGAGGAGCG
CAGCAGCCTGAGGAACAAGAAGAACAACAACGGCGACGGCAGCGTGAAAA
ACCGGAGGACAAGGAGAGCGAAGAAAGGCCGAGAGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14683:53..1940-

>mRNA_H-canaliculatus_F_contig14683.3581.1 ID=mRNA_H-canaliculatus_F_contig14683.3581.1|Name=mRNA_H-canaliculatus_F_contig14683.3581.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14683:53..1940- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCAGACGATACGAAAAAGATGGCAGACGATACGAAAAAGGCGCCGAT
AAAAATGTGCACGGGGAGGTGGTCGAAATCAGAGCACGAGGCCTTCCTCA
AGGGCATCCTCCGGCACGGTAAATCTTTCAAGGCGCCGATAAAAATGTGC
ACGGGGAGGTGGTCGAAATCAGAGCACGAGGCCTTCCTCAAGGGCATCCT
CCGGCACGGTAAATCTTTCAAGTCTATCAAGCAAGAGTTTATCCCCACGC
GGACGGTCTCCCAAGTGAAGACGCACGCCAAGAAGCACTTCCTGAAGCTT
CAAAAACGAGGACAGCTCGAAGAACGTTCCGGGGAACCGTCCGCCGTCGG
CGCCGCAGCCGCGTCGCCGACCAAGAAGAAGTCGCGCAGGGAGGAGCGCA
GCAGCCTGAGGAACAAGAAGAACAACAACGGCGACGGCAGCGTGAAAAAC
CGGAGGACAAGGAGAGCGAAGAAAGGCCGAGAGGGGTCTATCAAGCAAGA
GTTTATCCCCACGCGGACGGTCTCCCAAGTGAAGACGCACGCCAAGAAGC
ACTTCCTGAAGCTTCAAAAACGAGGACAGCTCGAAGAACGTTCCGGGGAA
CCGTCCGCCGTCGGCGCCGCAGCCGCGTCGCCGACCAAGAAGAAGTCGCG
CAGGGAGGAGCGCAGCAGCCTGAGGAACAAGAAGAACAACAACGGCGACG
GCAGCGTGAAAAACCGGAGGACAAGGAGAGCGAAGAAAGGCCGAGAGGGG
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