mRNA_H-canaliculatus_F_contig14606.3548.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14606.3548.1
Unique NamemRNA_H-canaliculatus_F_contig14606.3548.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14606.3548.1 vs. uniprot
Match: A0A6H5KLY0_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLY0_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.270e-21
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 QDIPFSERHPSLGRPVYTRLLDVLLAKCELPPGFVSWDEYCGEDVDEDALTELRE 165
            QD+PFSERHPSLGRPVY RLL+VLLAKCELP GFVSW  Y  ++ DEDA+TELRE
Sbjct:  426 QDVPFSERHPSLGRPVYVRLLNVLLAKCELPAGFVSWSTYTSDNFDEDAITELRE 480
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14606.3548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLY0_9PHAE1.270e-2178.18Importin N-terminal domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14606contigH-canaliculatus_F_contig14606:496..660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue4.3e-19
Seed eggNOG ortholog2880.D8LBP4
Preferred nameIPO13
KEGG koko:K15436
GOsGO:0003674,GO:0005048,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007270,GO:0008104,GO:0008134,GO:0008139,GO:0008150,GO:0008565,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0023051,GO:0023052,GO:0031074,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034504,GO:0034613,GO:0035257,GO:0035258,GO:0035259,GO:0038023,GO:0040011,GO:0042277,GO:0042330,GO:0042331,GO:0042564,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050789,GO:0050794,GO:0050804,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051427,GO:0051641,GO:0051649,GO:0051716,GO:0060089,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0098916,GO:0099177,GO:0099536,GO:0099537
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2022@1,KOG2022@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929209.7720523-CDS-H-canaliculatus_F_contig14606:495..6601622929209.7720523-CDS-H-canaliculatus_F_contig14606:495..660Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14606 496..660 -
1696845719.0492415-CDS-H-canaliculatus_F_contig14606:495..6601696845719.0492415-CDS-H-canaliculatus_F_contig14606:495..660Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14606 496..660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14606.3548.1prot_H-canaliculatus_F_contig14606.3548.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14606 496..660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14606.3548.1

>prot_H-canaliculatus_F_contig14606.3548.1 ID=prot_H-canaliculatus_F_contig14606.3548.1|Name=mRNA_H-canaliculatus_F_contig14606.3548.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=55bp
QDIPFSERHPSLGRPVYTRLLDVLLAKCELPPGFVSWDEYCGEDVDEDAL
TELRE
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mRNA from alignment at H-canaliculatus_F_contig14606:496..660-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14606.3548.1 ID=mRNA_H-canaliculatus_F_contig14606.3548.1|Name=mRNA_H-canaliculatus_F_contig14606.3548.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=165bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14606:496..660- (Hapterophycus canaliculatus Oshoro5f female)
CAGGACATCCCGTTCTCGGAGCGACACCCCTCCCTCGGCCGGCCGGTGTA
CACACGCCTGCTGGACGTCCTTCTTGCCAAGTGCGAGCTGCCGCCGGGCT
TCGTGTCGTGGGACGAGTACTGCGGGGAAGACGTGGACGAGGACGCACTC
ACGGAGCTCAGGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14606:496..660-

>mRNA_H-canaliculatus_F_contig14606.3548.1 ID=mRNA_H-canaliculatus_F_contig14606.3548.1|Name=mRNA_H-canaliculatus_F_contig14606.3548.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14606:496..660- (Hapterophycus canaliculatus Oshoro5f female)
CAGGACATCCCGTTCTCGGAGCGACACCCCTCCCTCGGCCGGCCGGTGTA
CACACGCCTGCTGGACGTCCTTCTTGCCAAGTGCGAGCTGCCGCCGGGCT
TCGTGTCGTGGGACGAGTACTGCGGGGAAGACGTGGACGAGGACGCACTC
ACGGAGCTCAGGGAGCAGGACATCCCGTTCTCGGAGCGACACCCCTCCCT
CGGCCGGCCGGTGTACACACGCCTGCTGGACGTCCTTCTTGCCAAGTGCG
AGCTGCCGCCGGGCTTCGTGTCGTGGGACGAGTACTGCGGGGAAGACGTG
GACGAGGACGCACTCACGGAGCTCAGGGAG
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